jgi.p|Nanoce1779_2|590249, mRNA_5767 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|590249
Unique Name	mRNA_5767
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1681
Alignment location	scaffold_11:532624..534551 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	590335
Track	FilteredModels2
ProteinId	590249

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_11	supercontig	scaffold_11:532624..534551 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|590249	gene_5767	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|590249	mRNA_5767-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5767	CDS_5767	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_11:532624..534551+
coding sequence from alignment at scaffold_11:532624..534551+

mRNA sequence

>mRNA_5767 ID=mRNA_5767|Name=jgi.p|Nanoce1779_2|590249|organism=Nannochloropsis oceanica|type=mRNA|length=1681bp
GTTGTGGCCTCCGCATGCTTCTGTGTGTGAGGAAAAGGGTACAGTAAATA
GGGTGTAGAAGAAAAAAGTGAAAGGAAGAAAGCAGAGCATGACCGTCAGA
GACTCTTTGAGAGCAGGACTCCTCGGATGATGCAGTCGAGGCAAGAACTT
TCTCAGTCTCACGAAGCAAGTGTTTTCTGGTGGCCTCTCATCCATCCTGT
TCTTGATGTGTTGTATTGCATATTGTTTTCTTCTTGGGTTTCGGTGTGCC
TGCCGCACTAGCCAGCTGTGGGTGAGGACTGAACTGATCGAATTGTGACC
TCCTGCTCAATCATGCCACAGTCTCCTGCGCAGGCAACAATGGTGCATCC
ATTGCAAAGCCAGGGCTCGGCCCTGAAAATTTTTCTGGTGGCAGTACTGC
AGCTGATCCCCATACCCGTGTTGAGCTTTTTGGTGCAGCCCCCTGCCGCG
CCGACGGGCCGCTCTGTCTTGACTTCCTCTCCCCCTCCCTCTGCCTCCGT
CGTCTCCGTGTTCGTACCCGAACGGAAGCACGTAGTGGTCCGCCAGAGCA
TTGCTCCCGACGGAAGTGACGGTATGCCACCCATGCCCTTGGGTGGGGAG
TCCGAGTATGAGTATGAATCGGAGTTCCCTGACCAACAAGCTGAAATAGA
ATACATGGCCGACGACGAGCTCCTTGCAAAATATCGCGCAGACATGCAAA
ACTCCCAAGACCAATGGCAGCTCAATCTCTTCCTCAAGTCCCAAACCGGT
ACCTGGTCGGGGGTCTGGAGCGAGTACACCCCTGTCCCAAACGGAGGCGC
CAATGGCGACACTGTCCTCCGCATGACGAACATCTATAAGGGCCGGCAAG
AGTGCGTAGGGGACAACGAGGCCCGCACTGTGTCGTGGCGAGATCTAACA
CTATTGCATGCCGCGGACGGCGGGCCCTTGGAGCCGGTGGTGGTGGCAGA
GCACACGATGGTACCGGCCATGTTCAGGGGAGGAGTCGGATCGATGGCAG
CGGATAATGTCTTCTCTCGCTCCTCGGTCCAGGCGAAGGAGGGAGGGAGG
GAGGGAGAGGAGGTCTTCGAAGCGGAGACTTGGATTCGGCAGGGGAACTA
TAGGACGCGGGTGTCGTTTGTGTACGAGAGTAAGGGGTCAACGGAGGCCT
TCGAGGCGCACAAGGTGGTGGTGAAAAAGGAAAGGCTGGGCATGCAAGGA
CCGACGGCGGAGGAGCCTGAGTTGTTTGGTTCGAGTGGACGGGGCATCTA
CGATAGTAGTGCGCGGATGCCGGGGTCGTGGGAGTTGTCGCTGCATGGAG
GCTTGAGCCTCGCATTCCCGCCCCTGCTGCCGCGGGGAGAGAAAGGGGCG
GTGATTGTGGACTGGACCGCGGGCTATATGAGGTTTCAAGCGGATCGACT
CTTTGACTTACCTGATGGGACGTTGGGGTCGTTAGAGGTGACGCAAATCG
GTACGGAGGACTCGATGAAATTCAAGCTTGAGGAGAAGGAGGCGGCCGAG
GGTTTGGAGACAGCCGGAGTTGTAGGGGAAGAAGTGGCGGGAGCGGACGA
ACCGTGAGGAGAAATGTTATCAATATTGCTTTGATCAGGGAGAGAAACGG
GGGGGGTTGGGTTCATTGACTTTGAGAGATAATGTATTATATTTGCCATT
ACCAAAAAAAAAAGTCACGACAACAGTGCAA

protein sequence of jgi.p|Nanoce1779_2|590249

>mRNA_5767-protein ID=mRNA_5767-protein|Name=jgi.p|Nanoce1779_2|590249|organism=Nannochloropsis oceanica|type=polypeptide|length=415bp
MPQSPAQATMVHPLQSQGSALKIFLVAVLQLIPIPVLSFLVQPPAAPTGR
SVLTSSPPPSASVVSVFVPERKHVVVRQSIAPDGSDGMPPMPLGGESEYE
YESEFPDQQAEIEYMADDELLAKYRADMQNSQDQWQLNLFLKSQTGTWSG
VWSEYTPVPNGGANGDTVLRMTNIYKGRQECVGDNEARTVSWRDLTLLHA
ADGGPLEPVVVAEHTMVPAMFRGGVGSMAADNVFSRSSVQAKEGGREGEE
VFEAETWIRQGNYRTRVSFVYESKGSTEAFEAHKVVVKKERLGMQGPTAE
EPELFGSSGRGIYDSSARMPGSWELSLHGGLSLAFPPLLPRGEKGAVIVD
WTAGYMRFQADRLFDLPDGTLGSLEVTQIGTEDSMKFKLEEKEAAEGLET
AGVVGEEVAGADEP*

mRNA from alignment at scaffold_11:532624..534551+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5767 ID=mRNA_5767|Name=jgi.p|Nanoce1779_2|590249|organism=Nannochloropsis oceanica|type=mRNA|length=1928bp|location=Sequence derived from alignment at scaffold_11:532624..534551+ (Nannochloropsis oceanica)
GTTGTGGCCTCCGCATGCTTCTGTGTGTGAGGAAAAGGGTACAGTAAATA
GGGTGTAGAAGAAAAAAGTGAAAGGAAGAAAGCAGAGCATGACCGTCAGA
GACTCTTTGAGAGCAGGACTCCTCGGATGATGCAGTCGAGGCAAGAACTT
TCTCAGTCTCACGAAGCAAGTGTTTTCTGGTGGCCTCTCATCCATCCTGT
TCTTGATGTGTTGTATTGCATATTGTTTTCTTCTTGGGTTTCGGTGTGCC
TGCCGCACTAGCCAGCTGTGGGTGAGGACTGAACTGATCGAATTGTGACC
TCCTGCTCAATCATGCCACAGTCTCCTGCGCAGGCAACAATGGTGCATCC
ATTGCAAAGCCAGGGCTCGGCCCTGAAAATTTTTCTGGTGGCAGTACTGC
AGCTGATCCCCATACCCGTGTTGAGCTTTTTGGTGCAGCCCCCTGCCGCG
CCGACGGGCCGCTCTGTCTTGACTTCCTCTCCCCCTCCCTCTGCCTCCGT
CGTCTCCGTGTTCGTACCCGAACGGAAGCACGTAGTGGTCCGCCAGAGCA
TTGCTCCCGACGGAAGTGACGGTATGCCACCCATGCCCTTGGGTGGGGAG
TCCGAGTATGAGTATGAATCGGAGTTCCCTGACCAACAAGCTGTACGTGA
GGGAGGGAAAGGGGGAGGGGACACGGGATGTTGAGGGGGGAGAGGGAAGA
TGAGGTAGCGGAAGAACTGCACATGAGGGTATCAAGATGAATAGTCGGAG
GGGAAAGGGGGAAAGGTTGAACGTGAAAAGAGGCTTAAAGGGGGACCTCT
CCCTTAACCTGAACCTGGCCACTTGATACTCGCTTGCACTTTCTCATGCA
TCTTCCCTCACATTCTTCACGTCCCCCGACAATCAATAGGAAATAGAATA
CATGGCCGACGACGAGCTCCTTGCAAAATATCGCGCAGACATGCAAAACT
CCCAAGACCAATGGCAGCTCAATCTCTTCCTCAAGTCCCAAACCGGTACC
TGGTCGGGGGTCTGGAGCGAGTACACCCCTGTCCCAAACGGAGGCGCCAA
TGGCGACACTGTCCTCCGCATGACGAACATCTATAAGGGCCGGCAAGAGT
GCGTAGGGGACAACGAGGCCCGCACTGTGTCGTGGCGAGATCTAACACTA
TTGCATGCCGCGGACGGCGGGCCCTTGGAGCCGGTGGTGGTGGCAGAGCA
CACGATGGTACCGGCCATGTTCAGGGGAGGAGTCGGATCGATGGCAGCGG
ATAATGTCTTCTCTCGCTCCTCGGTCCAGGCGAAGGAGGGAGGGAGGGAG
GGAGAGGAGGTCTTCGAAGCGGAGACTTGGATTCGGCAGGGGAACTATAG
GACGCGGGTGTCGTTTGTGTACGAGAGTAAGGGGTCAACGGAGGCCTTCG
AGGCGCACAAGGTGGTGGTGAAAAAGGAAAGGCTGGGCATGCAAGGACCG
ACGGCGGAGGAGCCTGAGTTGTTTGGTTCGAGTGGACGGGGCATCTACGA
TAGTAGTGCGCGGATGCCGGGGTCGTGGGAGTTGTCGCTGCATGGAGGCT
TGAGCCTCGCATTCCCGCCCCTGCTGCCGCGGGGAGAGAAAGGGGCGGTG
ATTGTGGACTGGACCGCGGGCTATATGAGGTTTCAAGCGGATCGACTCTT
TGACTTACCTGATGGGACGTTGGGGTCGTTAGAGGTGACGCAAATCGGTA
CGGAGGACTCGATGAAATTCAAGCTTGAGGAGAAGGAGGCGGCCGAGGGT
TTGGAGACAGCCGGAGTTGTAGGGGAAGAAGTGGCGGGAGCGGACGAACC
GTGAGGAGAAATGTTATCAATATTGCTTTGATCAGGGAGAGAAACGGGGG
GGGTTGGGTTCATTGACTTTGAGAGATAATGTATTATATTTGCCATTACC
AAAAAAAAAAGTCACGACAACAGTGCAA

Coding sequence (CDS) from alignment at scaffold_11:532624..534551+

>mRNA_5767 ID=mRNA_5767|Name=jgi.p|Nanoce1779_2|590249|organism=Nannochloropsis oceanica|type=CDS|length=2490bp|location=Sequence derived from alignment at scaffold_11:532624..534551+ (Nannochloropsis oceanica)
ATGCCACAGTCTCCTGCGCAGGCAACAATGGTGCATCCATTGCAAAGCCA
GGGCTCGGCCCTGAAAATTTTTCTGGTGGCAGTACTGCAGCTGATCCCCA
TACCCGTGTTGAGCTTTTTGGTGCAGCCCCCTGCCGCGCCGACGGGCCGC
TCTGTCTTGACTTCCTCTCCCCCTCCCTCTGCCTCCGTCGTCTCCGTGTT
CGTACCCGAACGGAAGCACGTAGTGGTCCGCCAGAGCATTGCTCCCGACG
GAAGTGACGGTATGCCACCCATGCCCTTGGGTGGGGAGTCCGAGTATGAG
TATGAATCGGAGTTCCCTGACCAACAAGCTGAAATAGAATACATGGCCGA
CGACGAGCTCCTTGCAAAATATCGCGCAGACATGCAAAACTCCCAAGACC
AATGGCAGCTCAATCTCTTCCTCAAGTCCCAAACCGGTACCTGGTCGGGG
GTCTGGAGCGAGTACACCCCTGTCCCAAACGGAGGCGCCAATGGCGACAC
TGTCCTCCGCATGACGAACATCTATAAGGGCCGGCAAGAGTGCGTAGGGG
ACAACGAGGCCCGCACTGTGTCGTGGCGAGATCTAACACTATTGCATGCC
GCGGACGGCGGGCCCTTGGAGCCGGTGGTGGTGGCAGAGCACACGATGGT
ACCGGCCATGTTCAGGGGAGGAGTCGGATCGATGGCAGCGGATAATGTCT
TCTCTCGCTCCTCGGTCCAGGCGAAGGAGGGAGGGAGGGAGGGAGAGGAG
GTCTTCGAAGCGGAGACTTGGATTCGGCAGGGGAACTATAGGACGCGGGT
GTCGTTTGTGTACGAGAGTAAGGGGTCAACGGAGGCCTTCGAGGCGCACA
AGGTGGTGGTGAAAAAGGAAAGGCTGGGCATGCAAGGACCGACGGCGGAG
GAGCCTGAGTTGTTTGGTTCGAGTGGACGGGGCATCTACGATAGTAGTGC
GCGGATGCCGGGGTCGTGGGAGTTGTCGCTGCATGGAGGCTTGAGCCTCG
CATTCCCGCCCCTGCTGCCGCGGGGAGAGAAAGGGGCGGTGATTGTGGAC
TGGACCGCGGGCTATATGAGGTTTCAAGCGGATCGACTCTTTGACTTACC
TGATGGGACGTTGGGGTCGTTAGAGGTGACGCAAATCGGTACGGAGGACT
CGATGAAATTCAAGCTTGAGGAGAAGGAGGCGGCCGAGGGTTTGGAGACA
GCCGGAGTTGTAGGGGAAGAAGTGGCGGGAGCGGACGAACCGTGAATGCC
ACAGTCTCCTGCGCAGGCAACAATGGTGCATCCATTGCAAAGCCAGGGCT
CGGCCCTGAAAATTTTTCTGGTGGCAGTACTGCAGCTGATCCCCATACCC
GTGTTGAGCTTTTTGGTGCAGCCCCCTGCCGCGCCGACGGGCCGCTCTGT
CTTGACTTCCTCTCCCCCTCCCTCTGCCTCCGTCGTCTCCGTGTTCGTAC
CCGAACGGAAGCACGTAGTGGTCCGCCAGAGCATTGCTCCCGACGGAAGT
GACGGTATGCCACCCATGCCCTTGGGTGGGGAGTCCGAGTATGAGTATGA
ATCGGAGTTCCCTGACCAACAAGCTGAAATAGAATACATGGCCGACGACG
AGCTCCTTGCAAAATATCGCGCAGACATGCAAAACTCCCAAGACCAATGG
CAGCTCAATCTCTTCCTCAAGTCCCAAACCGGTACCTGGTCGGGGGTCTG
GAGCGAGTACACCCCTGTCCCAAACGGAGGCGCCAATGGCGACACTGTCC
TCCGCATGACGAACATCTATAAGGGCCGGCAAGAGTGCGTAGGGGACAAC
GAGGCCCGCACTGTGTCGTGGCGAGATCTAACACTATTGCATGCCGCGGA
CGGCGGGCCCTTGGAGCCGGTGGTGGTGGCAGAGCACACGATGGTACCGG
CCATGTTCAGGGGAGGAGTCGGATCGATGGCAGCGGATAATGTCTTCTCT
CGCTCCTCGGTCCAGGCGAAGGAGGGAGGGAGGGAGGGAGAGGAGGTCTT
CGAAGCGGAGACTTGGATTCGGCAGGGGAACTATAGGACGCGGGTGTCGT
TTGTGTACGAGAGTAAGGGGTCAACGGAGGCCTTCGAGGCGCACAAGGTG
GTGGTGAAAAAGGAAAGGCTGGGCATGCAAGGACCGACGGCGGAGGAGCC
TGAGTTGTTTGGTTCGAGTGGACGGGGCATCTACGATAGTAGTGCGCGGA
TGCCGGGGTCGTGGGAGTTGTCGCTGCATGGAGGCTTGAGCCTCGCATTC
CCGCCCCTGCTGCCGCGGGGAGAGAAAGGGGCGGTGATTGTGGACTGGAC
CGCGGGCTATATGAGGTTTCAAGCGGATCGACTCTTTGACTTACCTGATG
GGACGTTGGGGTCGTTAGAGGTGACGCAAATCGGTACGGAGGACTCGATG
AAATTCAAGCTTGAGGAGAAGGAGGCGGCCGAGGGTTTGGAGACAGCCGG
AGTTGTAGGGGAAGAAGTGGCGGGAGCGGACGAACCGTGA

Synonyms

Publications