Properties
| Property Name | Value |
|---|
| TranscriptId | 542267 |
| Track | FilteredModels2 |
| ProteinId | 542181 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_11 | supercontig | scaffold_11:530371..532647 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5766 ID=mRNA_5766|Name=jgi.p|Nanoce1779_2|542181|organism=Nannochloropsis oceanica|type=mRNA|length=2186bp
ACAGAAGCATGCGGAGGCCACAACGACCATGATGGAAAGGCTTCTCGCCC
ATCGGGCCGAGGGGCGCCTCCGCCCACCCGCGTTCGAGGCTGGCGTACAT
GCCCGCCGCCTCCGACACGTCTCGCCCAGTGCCCGCGTGGAGATCAAGAA
TGGCCAACGTGGACCGGTGAATCACCTGGACTTAGACCCGTACGAGGATC
GCTTCCTGCTTGTAGCGGCGGGCGATGCCACGGTGGGACTGTATGACCTG
GGTGCCACGGAGCGGGTGCCGCAAGACGACGACGATGGCGCGAGTACAGG
GCCTCTGCTGCGCGTGCGAAGCTTGCAAGTTACTCCCAGGGCCAGCGTGC
TGGGGGCAGGCGGCACAAGGGATAACACGAGCGACACCGCCGCAGGGGTG
GCGGCAAGCATGGCATTGGCAGCACGGGGACCTCCGCCGACTGAGGGACA
CCGGTACAGCGTGACAAGCGTGCAATGGTATCCGTTGGACACTGGTTTGT
TTGTGTCGGGCAGCACGGACGGCACGGTGCGAGTCTGGGATACAAACGTC
TTTGCCAATGCCGGCACATTTGATTTAGGCAGCAATGTACATGCCTTGGC
TTTGTCGGCTGCTATGCGGACGCATTCGTTGGTGGCGGTAGGGACGGATG
ATCGTCGTGTCCGTTTGTGCGATCTCAAGTCGGGAGGGAGCAGCCATTTG
CTAACGGGCCACGCGGAGGCCGTCACGACAGTCGCCTGGTCCCCTACGCA
AGAGCACCTCCTAGCCACAGGCTCGCGCGACTCAACCGTCCGCCTCTGGG
ACGTGCGTCGCTCCGGCACCTCTGCATGTGTCATGACCTTGGATCAATAC
ACCGACCACCGGGGACACGCTCCCGGCATGATGGGGGGGGCTACAGAGCT
GGCCAAGGCACACAACGGGTGGATTGTCTCGGTCGAGTTTACCCCTAATG
GGTGTTATCTACTGAGTGCTGGTACCGATAAACGCTTGCGACTTTGGAAT
GCCTACACGGGAGATAATACGTTGGTAAACTACGCGGGGACGCATAACGA
CAAAGCGTGTGGATGGAAGGTCAAGGCCATCCAGACAGGGAGCAAGGGAG
GGGATGAGCTTCGCAGTGGTGGCGGGACCATGGTTGTGTATCCGAATGGG
GCCTCGGGTGAAGTGTTACTGTACCCGCTGATGCCACAAAATAGGCACCG
TCGTCGTCGGAAAGGAGCAGGGACGATTGGATCAGTGGGTCGACCGGTGC
ACAGCTTGCGGGGACATCTGGACGCCGTGCAGTCGGTGGTGCATCGGCGG
GATGCCGAGCAGATAATCACCGGGGGGGCTGACAGTCTCTTGTTGGTTTT
TGATTGCTCCCGGCACGATATCCAAAATAGCCAGTGCTTGGATGACGAGG
AAGGAGATAAATCGCCTAAGGATGGCTTTGGACGGAAGCGGACGGCGGGG
GCAGCAGCGGATGACTGGAGTAGCGATGAAGAAGAAGGGGGAGGAGGAGG
AGAGGGTGGAGGGGGAGGCAATAGCGAAGAGGGTTTTGTTCCTCCTATTC
TACGAGTGGTCGAGGGCGATGACAGTCGGAGAGCCTCGCGGCGAAGGGAA
TGTTGAGATTGTAAAAAAAAAAATCATATACGAAGACCGCCTGTACAAAA
AATGAAAGATTACGAGAAGAAAATGTGCTGCTATCCCCATTCCGGTTTGG
ATGTTTCTATCTGGCGCAGAAAGGCAAAAAAAAATGGAAAACATTTGTAC
CAGTAATGTGTACAAACAATTATAAATGAGTAGGTAACAAGAATAAATGA
CGAGACTTATCCATTGGAATGAATCACCGGATCTGTAGCCCTCCCTCCCT
TTTTCTTTTAAGGCATCATCCATACTCTCATGTCCAGGATATTCAACTTT
AAAGAGAGCAAAAAGGATGTCAGAGTATGGGAGCCATTGACAATGCTCTC
GTGGAGGGCTCCGATGAGCTCCTGGCTCGCTCGTCCATGTATGCCAGCAG
GCTATGTCTTCGATGCTTGGTAGTGGTGGGAAGGCATCCCAGCTTGGTAG
TGGTGGGAAGGCATCCCAGAAGAATGAATCGAGCAAGAGAGACGAAGAGA
GAAGCTATTTGTCGGGATGGCTCGGGTGTGCACGCGAGATATCACGAATT
TACAGAAGCTCAAGAAAAAGAAAAGAAGTTTCTTTG back to topprotein sequence of jgi.p|Nanoce1779_2|542181 >mRNA_5766-protein ID=mRNA_5766-protein|Name=jgi.p|Nanoce1779_2|542181|organism=Nannochloropsis oceanica|type=polypeptide|length=526bp
MMERLLAHRAEGRLRPPAFEAGVHARRLRHVSPSARVEIKNGQRGPVNHL
DLDPYEDRFLLVAAGDATVGLYDLGATERVPQDDDDGASTGPLLRVRSLQ
VTPRASVLGAGGTRDNTSDTAAGVAASMALAARGPPPTEGHRYSVTSVQW
YPLDTGLFVSGSTDGTVRVWDTNVFANAGTFDLGSNVHALALSAAMRTHS
LVAVGTDDRRVRLCDLKSGGSSHLLTGHAEAVTTVAWSPTQEHLLATGSR
DSTVRLWDVRRSGTSACVMTLDQYTDHRGHAPGMMGGATELAKAHNGWIV
SVEFTPNGCYLLSAGTDKRLRLWNAYTGDNTLVNYAGTHNDKACGWKVKA
IQTGSKGGDELRSGGGTMVVYPNGASGEVLLYPLMPQNRHRRRRKGAGTI
GSVGRPVHSLRGHLDAVQSVVHRRDAEQIITGGADSLLLVFDCSRHDIQN
SQCLDDEEGDKSPKDGFGRKRTAGAAADDWSSDEEEGGGGGEGGGGGNSE
EGFVPPILRVVEGDDSRRASRRREC* back to topmRNA from alignment at scaffold_11:530371..532647- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5766 ID=mRNA_5766|Name=jgi.p|Nanoce1779_2|542181|organism=Nannochloropsis oceanica|type=mRNA|length=2277bp|location=Sequence derived from alignment at scaffold_11:530371..532647- (Nannochloropsis oceanica)
ACAGAAGCATGCGGAGGCCACAACGACCATGATGGAAAGGCTTCTCGCCC
ATCGGGCCGAGGGGCGCCTCCGCCCACCCGCGTTCGAGGCTGGCGTACAT
GCCCGCCGCCTCCGACACGTCTCGCCCAGTGCCCGCGTGGAGATCAAGAA
TGGCCAACGTGGACCGGTGAATCACCTGGACTTAGACCCGTACGAGGATC
GCTTCCTGCTTGTAGCGGCGGGCGATGCCACGGTGGGACTGTATGACCTG
GGTGCCACGGAGCGGGTGCCGCAAGACGACGACGATGGCGCGAGTACAGG
GCCTCTGCTGCGCGTGCGAAGCTTGCAAGTTACTCCCAGGGCCAGCGTGC
TGGGGGCAGGCGGCACAAGGGATAACACGAGCGACACCGCCGCAGGGGTG
GCGGCAAGCATGGCATTGGCAGCACGGGGACCTCCGCCGACTGAGGGACA
CCGGTACAGCGTGACAAGCGTGCAATGGTATCCGTTGGACACTGGTTTGT
TTGTGTCGGGCAGCACGGACGGCACGGTGCGAGTCTGGGATACAAACGTC
TTTGCCAATGCCGGCACATTTGATTTAGGCAGCAATGTACATGCCTTGGC
TTTGTCGGCTGCTATGCGGACGCATTCGTTGGTGGCGGTAGGGACGGATG
ATCGTCGTGTCCGTTTGTGCGATCTCAAGTCGGGAGGGAGCAGCCATTTG
CTAACGGGCCACGCGGAGGCCGTCACGACAGTCGCCTGGTCCCCTACGCA
AGAGCACCTCCTAGCCACAGTACGTCCCCAAAAGTAATTGTTTTGCTTCA
ATGTAAAACCAACAGCTATTTAAACCAAGACTCTTTCTTTCCCTACGCTT
CCTCTATCAGGGCTCGCGCGACTCAACCGTCCGCCTCTGGGACGTGCGTC
GCTCCGGCACCTCTGCATGTGTCATGACCTTGGATCAATACACCGACCAC
CGGGGACACGCTCCCGGCATGATGGGGGGGGCTACAGAGCTGGCCAAGGC
ACACAACGGGTGGATTGTCTCGGTCGAGTTTACCCCTAATGGGTGTTATC
TACTGAGTGCTGGTACCGATAAACGCTTGCGACTTTGGAATGCCTACACG
GGAGATAATACGTTGGTAAACTACGCGGGGACGCATAACGACAAAGCGTG
TGGATGGAAGGTCAAGGCCATCCAGACAGGGAGCAAGGGAGGGGATGAGC
TTCGCAGTGGTGGCGGGACCATGGTTGTGTATCCGAATGGGGCCTCGGGT
GAAGTGTTACTGTACCCGCTGATGCCACAAAATAGGCACCGTCGTCGTCG
GAAAGGAGCAGGGACGATTGGATCAGTGGGTCGACCGGTGCACAGCTTGC
GGGGACATCTGGACGCCGTGCAGTCGGTGGTGCATCGGCGGGATGCCGAG
CAGATAATCACCGGGGGGGCTGACAGTCTCTTGTTGGTTTTTGATTGCTC
CCGGCACGATATCCAAAATAGCCAGTGCTTGGATGACGAGGAAGGAGATA
AATCGCCTAAGGATGGCTTTGGACGGAAGCGGACGGCGGGGGCAGCAGCG
GATGACTGGAGTAGCGATGAAGAAGAAGGGGGAGGAGGAGGAGAGGGTGG
AGGGGGAGGCAATAGCGAAGAGGGTTTTGTTCCTCCTATTCTACGAGTGG
TCGAGGGCGATGACAGTCGGAGAGCCTCGCGGCGAAGGGAATGTTGAGAT
TGTAAAAAAAAAAATCATATACGAAGACCGCCTGTACAAAAAATGAAAGA
TTACGAGAAGAAAATGTGCTGCTATCCCCATTCCGGTTTGGATGTTTCTA
TCTGGCGCAGAAAGGCAAAAAAAAATGGAAAACATTTGTACCAGTAATGT
GTACAAACAATTATAAATGAGTAGGTAACAAGAATAAATGACGAGACTTA
TCCATTGGAATGAATCACCGGATCTGTAGCCCTCCCTCCCTTTTTCTTTT
AAGGCATCATCCATACTCTCATGTCCAGGATATTCAACTTTAAAGAGAGC
AAAAAGGATGTCAGAGTATGGGAGCCATTGACAATGCTCTCGTGGAGGGC
TCCGATGAGCTCCTGGCTCGCTCGTCCATGTATGCCAGCAGGCTATGTCT
TCGATGCTTGGTAGTGGTGGGAAGGCATCCCAGCTTGGTAGTGGTGGGAA
GGCATCCCAGAAGAATGAATCGAGCAAGAGAGACGAAGAGAGAAGCTATT
TGTCGGGATGGCTCGGGTGTGCACGCGAGATATCACGAATTTACAGAAGC
TCAAGAAAAAGAAAAGAAGTTTCTTTG back to topCoding sequence (CDS) from alignment at scaffold_11:530371..532647- >mRNA_5766 ID=mRNA_5766|Name=jgi.p|Nanoce1779_2|542181|organism=Nannochloropsis oceanica|type=CDS|length=3156bp|location=Sequence derived from alignment at scaffold_11:530371..532647- (Nannochloropsis oceanica)
GGCTCGCGCGACTCAACCGTCCGCCTCTGGGACGTGCGTCGCTCCGGCAC
CTCTGCATGTGTCATGACCTTGGATCAATACACCGACCACCGGGGACACG
CTCCCGGCATGATGGGGGGGGCTACAGAGCTGGCCAAGGCACACAACGGG
TGGATTGTCTCGGTCGAGTTTACCCCTAATGGGTGTTATCTACTGAGTGC
TGGTACCGATAAACGCTTGCGACTTTGGAATGCCTACACGGGAGATAATA
CGTTGGTAAACTACGCGGGGACGCATAACGACAAAGCGTGTGGATGGAAG
GTCAAGGCCATCCAGACAGGGAGCAAGGGAGGGGATGAGCTTCGCAGTGG
TGGCGGGACCATGGTTGTGTATCCGAATGGGGCCTCGGGTGAAGTGTTAC
TGTACCCGCTGATGCCACAAAATAGGCACCGTCGTCGTCGGAAAGGAGCA
GGGACGATTGGATCAGTGGGTCGACCGGTGCACAGCTTGCGGGGACATCT
GGACGCCGTGCAGTCGGTGGTGCATCGGCGGGATGCCGAGCAGATAATCA
CCGGGGGGGCTGACAGTCTCTTGTTGGTTTTTGATTGCTCCCGGCACGAT
ATCCAAAATAGCCAGTGCTTGGATGACGAGGAAGGAGATAAATCGCCTAA
GGATGGCTTTGGACGGAAGCGGACGGCGGGGGCAGCAGCGGATGACTGGA
GTAGCGATGAAGAAGAAGGGGGAGGAGGAGGAGAGGGTGGAGGGGGAGGC
AATAGCGAAGAGGGTTTTGTTCCTCCTATTCTACGAGTGGTCGAGGGCGA
TGACAGTCGGAGAGCCTCGCGGCGAAGGGAATGTTGAATGATGGAAAGGC
TTCTCGCCCATCGGGCCGAGGGGCGCCTCCGCCCACCCGCGTTCGAGGCT
GGCGTACATGCCCGCCGCCTCCGACACGTCTCGCCCAGTGCCCGCGTGGA
GATCAAGAATGGCCAACGTGGACCGGTGAATCACCTGGACTTAGACCCGT
ACGAGGATCGCTTCCTGCTTGTAGCGGCGGGCGATGCCACGGTGGGACTG
TATGACCTGGGTGCCACGGAGCGGGTGCCGCAAGACGACGACGATGGCGC
GAGTACAGGGCCTCTGCTGCGCGTGCGAAGCTTGCAAGTTACTCCCAGGG
CCAGCGTGCTGGGGGCAGGCGGCACAAGGGATAACACGAGCGACACCGCC
GCAGGGGTGGCGGCAAGCATGGCATTGGCAGCACGGGGACCTCCGCCGAC
TGAGGGACACCGGTACAGCGTGACAAGCGTGCAATGGTATCCGTTGGACA
CTGGTTTGTTTGTGTCGGGCAGCACGGACGGCACGGTGCGAGTCTGGGAT
ACAAACGTCTTTGCCAATGCCGGCACATTTGATTTAGGCAGCAATGTACA
TGCCTTGGCTTTGTCGGCTGCTATGCGGACGCATTCGTTGGTGGCGGTAG
GGACGGATGATCGTCGTGTCCGTTTGTGCGATCTCAAGTCGGGAGGGAGC
AGCCATTTGCTAACGGGCCACGCGGAGGCCGTCACGACAGTCGCCTGGTC
CCCTACGCAAGAGCACCTCCTAGCCACAGGCTCGCGCGACTCAACCGTCC
GCCTCTGGGACGTGCGTCGCTCCGGCACCTCTGCATGTGTCATGACCTTG
GATCAATACACCGACCACCGGGGACACGCTCCCGGCATGATGGGGGGGGC
TACAGAGCTGGCCAAGGCACACAACGGGTGGATTGTCTCGGTCGAGTTTA
CCCCTAATGGGTGTTATCTACTGAGTGCTGGTACCGATAAACGCTTGCGA
CTTTGGAATGCCTACACGGGAGATAATACGTTGGTAAACTACGCGGGGAC
GCATAACGACAAAGCGTGTGGATGGAAGGTCAAGGCCATCCAGACAGGGA
GCAAGGGAGGGGATGAGCTTCGCAGTGGTGGCGGGACCATGGTTGTGTAT
CCGAATGGGGCCTCGGGTGAAGTGTTACTGTACCCGCTGATGCCACAAAA
TAGGCACCGTCGTCGTCGGAAAGGAGCAGGGACGATTGGATCAGTGGGTC
GACCGGTGCACAGCTTGCGGGGACATCTGGACGCCGTGCAGTCGGTGGTG
CATCGGCGGGATGCCGAGCAGATAATCACCGGGGGGGCTGACAGTCTCTT
GTTGGTTTTTGATTGCTCCCGGCACGATATCCAAAATAGCCAGTGCTTGG
ATGACGAGGAAGGAGATAAATCGCCTAAGGATGGCTTTGGACGGAAGCGG
ACGGCGGGGGCAGCAGCGGATGACTGGAGTAGCGATGAAGAAGAAGGGGG
AGGAGGAGGAGAGGGTGGAGGGGGAGGCAATAGCGAAGAGGGTTTTGTTC
CTCCTATTCTACGAGTGGTCGAGGGCGATGACAGTCGGAGAGCCTCGCGG
CGAAGGGAATGTTGAATGATGGAAAGGCTTCTCGCCCATCGGGCCGAGGG
GCGCCTCCGCCCACCCGCGTTCGAGGCTGGCGTACATGCCCGCCGCCTCC
GACACGTCTCGCCCAGTGCCCGCGTGGAGATCAAGAATGGCCAACGTGGA
CCGGTGAATCACCTGGACTTAGACCCGTACGAGGATCGCTTCCTGCTTGT
AGCGGCGGGCGATGCCACGGTGGGACTGTATGACCTGGGTGCCACGGAGC
GGGTGCCGCAAGACGACGACGATGGCGCGAGTACAGGGCCTCTGCTGCGC
GTGCGAAGCTTGCAAGTTACTCCCAGGGCCAGCGTGCTGGGGGCAGGCGG
CACAAGGGATAACACGAGCGACACCGCCGCAGGGGTGGCGGCAAGCATGG
CATTGGCAGCACGGGGACCTCCGCCGACTGAGGGACACCGGTACAGCGTG
ACAAGCGTGCAATGGTATCCGTTGGACACTGGTTTGTTTGTGTCGGGCAG
CACGGACGGCACGGTGCGAGTCTGGGATACAAACGTCTTTGCCAATGCCG
GCACATTTGATTTAGGCAGCAATGTACATGCCTTGGCTTTGTCGGCTGCT
ATGCGGACGCATTCGTTGGTGGCGGTAGGGACGGATGATCGTCGTGTCCG
TTTGTGCGATCTCAAGTCGGGAGGGAGCAGCCATTTGCTAACGGGCCACG
CGGAGGCCGTCACGACAGTCGCCTGGTCCCCTACGCAAGAGCACCTCCTA
GCCACA back to top
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