jgi.p|Nanoce1779_2|590241, mRNA_5764 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|590241
Unique NamemRNA_5764
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1282
Alignment locationscaffold_11:525817..527098 +

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Properties
Property NameValue
TranscriptId590327
TrackFilteredModels2
ProteinId590241
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:525817..527098 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590241gene_5764Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590241mRNA_5764-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5764CDS_5764Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5764 ID=mRNA_5764|Name=jgi.p|Nanoce1779_2|590241|organism=Nannochloropsis oceanica|type=mRNA|length=1282bp
ACAGGACACTTACTCCATGGCGAGCATTGTAAGAAAAGCGGGCCTGCTGC
TGCTCCTCCTGAACGCAAGCCAAGCATTTCTCGTCGTGCCCGGCGGCCGC
ATCAGCAGCACTCCAAGCAGCCTTTCCTTCAAGCGCGGTCGTACCGCTTT
GATGAGTATTAAAGATGAGGTGGGCTCCAAGAAGCAAGGCAGCTTGCCCA
GCATGCCCTTTGTATCGGCCCCGTTGGGAGGCACGCCGCCCGCGCCACCC
ATGGGCTTGGGACGACGGAAGCCGGACCCGGGAAAGAGCACTTCGTACTT
CGACTTGGAGGACGAAACTGCACCTACTACGCCACGGCAGTTGGAGGGCG
ACTTGCTGCGAGATGGAGGAGTACTCAAGACAATTGTTAGAGAGGGGGGC
GGGCCTTTGGTGACGCCCGGTGCGGAGGTGGCAGTCAAGTATGAAGGCCG
CACGGCGGACGGGCAGGTGTTGTGTCGGGGGGAAGACTTTCGTTTCTTGC
AAGGGGACGGGACCATGATTGGTGGGTTTGAGACGGCTGTGGGCTCCATG
CGTGTGGGAGAGGTGGCGAAAGTGACGGTGCAGCCGTGGTATGCCTACGG
GAGCACGGGAGTGAGTCCTGTAGTGGGACCGGACACGCCGTTGGAGTTTG
ACATTGAAGTGTTGGAGGCGTCGGGTAACTTTTTGAACCCAAGGTCTTTC
CGGGACGTGGATCCGAAAAAGCTGCGTGATTCTAAGTCGATCGCCCAGGA
TTATGCGCAGCGGTCTGAGTTACGGATGCGGAATGAGGAGGGAATGACGG
GGACGGAGAAGTCGTTGAAGTGGTTTAAGTCTCTGTATTTCTTCGGATTC
TTCGAGGGAGAGACGGGCGAGAAGGCTCCCTGGTACTTGACGCCCACCAT
TACTTTTCCTATCATGTTCGTCACGTGCGCTGCGGCGTTTTATGTGCTCA
TTTCGTTCGGCGGAGTTTCGATCAAGCGGGATTTGGTTTTGGAGGATAGT
ATTGATTTGGGCTTTGCCTGGCTTGATCGTATCATGGCATAGGCGAGAAT
GTACTTTTGTCCTGCTATGCACTATCTTCAGTCGTTTGCTGTGTGTGTAA
AACTCTTAACTAGAAGATGGGAAACGGAGGTGGAGAAAAAGGAAGAAGAT
GTAGTGCGCGAGGGACTACCTTGATTAGGCCGCACGTTTGTGCGTGGTCT
TGGTGTTCGGGTGGATAATTCCGTGGAATTAAGGGAAAGAATGAAGTTTG
AAGTTTGTATGTCTTCGAGAACAAAAGTAAGA
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protein sequence of jgi.p|Nanoce1779_2|590241

>mRNA_5764-protein ID=mRNA_5764-protein|Name=jgi.p|Nanoce1779_2|590241|organism=Nannochloropsis oceanica|type=polypeptide|length=342bp
MASIVRKAGLLLLLLNASQAFLVVPGGRISSTPSSLSFKRGRTALMSIKD
EVGSKKQGSLPSMPFVSAPLGGTPPAPPMGLGRRKPDPGKSTSYFDLEDE
TAPTTPRQLEGDLLRDGGVLKTIVREGGGPLVTPGAEVAVKYEGRTADGQ
VLCRGEDFRFLQGDGTMIGGFETAVGSMRVGEVAKVTVQPWYAYGSTGVS
PVVGPDTPLEFDIEVLEASGNFLNPRSFRDVDPKKLRDSKSIAQDYAQRS
ELRMRNEEGMTGTEKSLKWFKSLYFFGFFEGETGEKAPWYLTPTITFPIM
FVTCAAAFYVLISFGGVSIKRDLVLEDSIDLGFAWLDRIMA*
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mRNA from alignment at scaffold_11:525817..527098+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5764 ID=mRNA_5764|Name=jgi.p|Nanoce1779_2|590241|organism=Nannochloropsis oceanica|type=mRNA|length=1282bp|location=Sequence derived from alignment at scaffold_11:525817..527098+ (Nannochloropsis oceanica)
ACAGGACACTTACTCCATGGCGAGCATTGTAAGAAAAGCGGGCCTGCTGC
TGCTCCTCCTGAACGCAAGCCAAGCATTTCTCGTCGTGCCCGGCGGCCGC
ATCAGCAGCACTCCAAGCAGCCTTTCCTTCAAGCGCGGTCGTACCGCTTT
GATGAGTATTAAAGATGAGGTGGGCTCCAAGAAGCAAGGCAGCTTGCCCA
GCATGCCCTTTGTATCGGCCCCGTTGGGAGGCACGCCGCCCGCGCCACCC
ATGGGCTTGGGACGACGGAAGCCGGACCCGGGAAAGAGCACTTCGTACTT
CGACTTGGAGGACGAAACTGCACCTACTACGCCACGGCAGTTGGAGGGCG
ACTTGCTGCGAGATGGAGGAGTACTCAAGACAATTGTTAGAGAGGGGGGC
GGGCCTTTGGTGACGCCCGGTGCGGAGGTGGCAGTCAAGTATGAAGGCCG
CACGGCGGACGGGCAGGTGTTGTGTCGGGGGGAAGACTTTCGTTTCTTGC
AAGGGGACGGGACCATGATTGGTGGGTTTGAGACGGCTGTGGGCTCCATG
CGTGTGGGAGAGGTGGCGAAAGTGACGGTGCAGCCGTGGTATGCCTACGG
GAGCACGGGAGTGAGTCCTGTAGTGGGACCGGACACGCCGTTGGAGTTTG
ACATTGAAGTGTTGGAGGCGTCGGGTAACTTTTTGAACCCAAGGTCTTTC
CGGGACGTGGATCCGAAAAAGCTGCGTGATTCTAAGTCGATCGCCCAGGA
TTATGCGCAGCGGTCTGAGTTACGGATGCGGAATGAGGAGGGAATGACGG
GGACGGAGAAGTCGTTGAAGTGGTTTAAGTCTCTGTATTTCTTCGGATTC
TTCGAGGGAGAGACGGGCGAGAAGGCTCCCTGGTACTTGACGCCCACCAT
TACTTTTCCTATCATGTTCGTCACGTGCGCTGCGGCGTTTTATGTGCTCA
TTTCGTTCGGCGGAGTTTCGATCAAGCGGGATTTGGTTTTGGAGGATAGT
ATTGATTTGGGCTTTGCCTGGCTTGATCGTATCATGGCATAGGCGAGAAT
GTACTTTTGTCCTGCTATGCACTATCTTCAGTCGTTTGCTGTGTGTGTAA
AACTCTTAACTAGAAGATGGGAAACGGAGGTGGAGAAAAAGGAAGAAGAT
GTAGTGCGCGAGGGACTACCTTGATTAGGCCGCACGTTTGTGCGTGGTCT
TGGTGTTCGGGTGGATAATTCCGTGGAATTAAGGGAAAGAATGAAGTTTG
AAGTTTGTATGTCTTCGAGAACAAAAGTAAGA
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Coding sequence (CDS) from alignment at scaffold_11:525817..527098+

>mRNA_5764 ID=mRNA_5764|Name=jgi.p|Nanoce1779_2|590241|organism=Nannochloropsis oceanica|type=CDS|length=1026bp|location=Sequence derived from alignment at scaffold_11:525817..527098+ (Nannochloropsis oceanica)
ATGGCGAGCATTGTAAGAAAAGCGGGCCTGCTGCTGCTCCTCCTGAACGC
AAGCCAAGCATTTCTCGTCGTGCCCGGCGGCCGCATCAGCAGCACTCCAA
GCAGCCTTTCCTTCAAGCGCGGTCGTACCGCTTTGATGAGTATTAAAGAT
GAGGTGGGCTCCAAGAAGCAAGGCAGCTTGCCCAGCATGCCCTTTGTATC
GGCCCCGTTGGGAGGCACGCCGCCCGCGCCACCCATGGGCTTGGGACGAC
GGAAGCCGGACCCGGGAAAGAGCACTTCGTACTTCGACTTGGAGGACGAA
ACTGCACCTACTACGCCACGGCAGTTGGAGGGCGACTTGCTGCGAGATGG
AGGAGTACTCAAGACAATTGTTAGAGAGGGGGGCGGGCCTTTGGTGACGC
CCGGTGCGGAGGTGGCAGTCAAGTATGAAGGCCGCACGGCGGACGGGCAG
GTGTTGTGTCGGGGGGAAGACTTTCGTTTCTTGCAAGGGGACGGGACCAT
GATTGGTGGGTTTGAGACGGCTGTGGGCTCCATGCGTGTGGGAGAGGTGG
CGAAAGTGACGGTGCAGCCGTGGTATGCCTACGGGAGCACGGGAGTGAGT
CCTGTAGTGGGACCGGACACGCCGTTGGAGTTTGACATTGAAGTGTTGGA
GGCGTCGGGTAACTTTTTGAACCCAAGGTCTTTCCGGGACGTGGATCCGA
AAAAGCTGCGTGATTCTAAGTCGATCGCCCAGGATTATGCGCAGCGGTCT
GAGTTACGGATGCGGAATGAGGAGGGAATGACGGGGACGGAGAAGTCGTT
GAAGTGGTTTAAGTCTCTGTATTTCTTCGGATTCTTCGAGGGAGAGACGG
GCGAGAAGGCTCCCTGGTACTTGACGCCCACCATTACTTTTCCTATCATG
TTCGTCACGTGCGCTGCGGCGTTTTATGTGCTCATTTCGTTCGGCGGAGT
TTCGATCAAGCGGGATTTGGTTTTGGAGGATAGTATTGATTTGGGCTTTG
CCTGGCTTGATCGTATCATGGCATAG
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Synonyms
Publications