jgi.p|Nanoce1779_2|577812, mRNA_576 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|577812
Unique NamemRNA_576
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1202
Alignment locationscaffold_3:1415690..1417231 -

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Properties
Property NameValue
TranscriptId577898
TrackFilteredModels2
ProteinId577812
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:1415690..1417231 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577812gene_576Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577812mRNA_576-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_576CDS_576Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_576 ID=mRNA_576|Name=jgi.p|Nanoce1779_2|577812|organism=Nannochloropsis oceanica|type=mRNA|length=1202bp
AGGCGACGCCCAAGCCAGACAAGAAGAAGAAGGCCTCAAAATCGCAAAAT
CGCCTGCGACGGGCTTTGGAGGCAGATATCAAAAGATGTCTTCCATAGCC
ACTGTGAGCCACGAGCAAGCGGTCGTCGCATTTTCTTCCCATAATCATGA
AAGTAAGCCTCTTCTGCCGCCAGCCTCTTCTCCAGTGGGCGAGTTGTCGT
CTTCTCTGCCCTCTTCGTCGTCCCAGTTCTTTCCTCTCTCTTCGGGTAGT
AAGAGTAGCGGCCGCCATTCAAGCAATAGCATCAGCAACAATTCACGCAG
CAGCACTCATGAAGCTTCGTCATCTTTGTCTCCTTGCATCTCGCCATTCT
CTTGTTCCCCACGCTTTCGGGACTGGCTGCGGCCTTCCAAATCCACCGCT
ACAGTCTCTGCACTATTAGACGTCTGGGTCCCGTGGCTGGCCTATCTAGC
GTTGGGTGTGGGAGCAAATGATTTTGTTCTTGGCGGGCTTGTGGCAGCAG
GTGTGGCAATGTTGGGGTTTTTATTCCAGGGCTATCGGTTTCATGGACAG
CGGAGTCTGAGGACCTGGCCAAAGGTGCATGGAATGGGGGTGCTCTTGAC
CTGGGTGGCCAATGCCGTGTTTGTGGCTGAGGTGGCGTCGGATGGAGACA
TCGCCACACGATACTCTCTTTTCGTCGTCATTTCAGGTGTGGTTCTCTCC
AATATCTTTTCCCTTGCCCTCGGCCACCCAGCCATGCTGGACGAGGCGAG
AGAACACGTCTCGAGCGAGGAGGAGGAGAGTCATCCTCTGTTTATCAGGA
TGCACACAGTGGCTTCTTCCATTCTCTTTATTCTGAGTCTATTGCAGTGG
TTGTGCGTTTTCCTGGCGGCAGTAGTATATCCGGATGATAAAGCTCTTGC
CCCCTACCTCCTCCTCCTCTTTCCAGTGGGAAGCCTTCTACTGGCCCTCC
TTCTCGTCTCCCTCTACCTCCGACGACAACAAAAGCAGCTGGCCCGTGCG
TTGCGTCCTCCCTTTCTCCGGGTGGATGAGGAGGAAGGAAGGAGTGCGGG
AGGGAAAGAGGACAACCGACTGCCGCCCACCAGTCCTCTTCTGACGAGTC
TATAGGGCTTCGAACGTAGATATGAGGAGGGGGGAGGAAAGAAGGGCGAG
AGAGAGAAGGGGAAAAAAGGGAAGAAAGAAAGAAACAAATTATGCTTTGA
GT
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protein sequence of jgi.p|Nanoce1779_2|577812

>mRNA_576-protein ID=mRNA_576-protein|Name=jgi.p|Nanoce1779_2|577812|organism=Nannochloropsis oceanica|type=polypeptide|length=340bp
MSSIATVSHEQAVVAFSSHNHESKPLLPPASSPVGELSSSLPSSSSQFFP
LSSGSKSSGRHSSNSISNNSRSSTHEASSSLSPCISPFSCSPRFRDWLRP
SKSTATVSALLDVWVPWLAYLALGVGANDFVLGGLVAAGVAMLGFLFQGY
RFHGQRSLRTWPKVHGMGVLLTWVANAVFVAEVASDGDIATRYSLFVVIS
GVVLSNIFSLALGHPAMLDEAREHVSSEEEESHPLFIRMHTVASSILFIL
SLLQWLCVFLAAVVYPDDKALAPYLLLLFPVGSLLLALLLVSLYLRRQQK
QLARALRPPFLRVDEEEGRSAGGKEDNRLPPTSPLLTSL*
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mRNA from alignment at scaffold_3:1415690..1417231-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_576 ID=mRNA_576|Name=jgi.p|Nanoce1779_2|577812|organism=Nannochloropsis oceanica|type=mRNA|length=1542bp|location=Sequence derived from alignment at scaffold_3:1415690..1417231- (Nannochloropsis oceanica)
AGGCGACGCCCAAGCCAGACAAGAAGAAGAAGGCCTCAAAATCGCAAAAT
CGCCTGCGACGGGCTTTGGAGGCAGATATCAAAAGATGTCTTCCATAGCC
ACTGTGAGCCACGAGCAAGCGGTCGTCGCATTTTCTTCCCATAATCATGA
AAGTAAGCCTCTTCTGCCGCCAGCCTCTTCTCCAGTGGGCGAGTTGTCGT
CTTCTCTGCCCTCTTCGTCGTCCCAGTTCTTTCCTCTCTCTTCGGGTAGT
AAGAGTAGCGGCCGCCATTCAAGCAATAGCATCAGCAACAATTCACGCAG
CAGCACTCATGAAGCTTCGTCATCTTTGTCTCCTTGCATCTCGCCATTCT
CTTGTTCCCCACGCTTTCGGGACTGGCTGCGGCCTTCCAAATCCACCGCT
ACAGTCTCTGCACTATTAGACGTCTGGGTCCCGTGGCTGGCCTATCTAGC
GTTGGGTGTGGGAGCAAATGATTTTGTTCTTGGCGGGCTTGTGGCAGCAG
GTGTGGCAATGTTGGGGTTTTTATTCCAGGGCTATCGGTTTCATGGACAG
CGGAGTCTGAGGACCTGGCCAAAGGTGCATGGAATGGGGGTGCTCTTGAC
CTGGGTGGCCAATGCCGTGTTTGTGGCTGAGGTGGCGTCGGATGGAGACA
TCGCCACAGTGAGTCTAAAGAGGTGAAAGGAGTAGGAAGGGGGGTGACAC
AGAAGATTTTCGGAGGGTTTCCTTACAGATAAATTAATGACGTGCTGACA
CACCTTCCCTTCTTCCTTCCCTGCCTCCCTGTATTTACCCTGGCAGCGAT
ACTCTCTTTTCGTCGTCATTTCAGGTGTGGTTCTCTCCAATATCTTTTCC
CTTGCCCTCGGCCACCCAGCCATGCTGGACGAGGCGAGAGAACACGTCTC
GAGCGAGGAGGAGGAGAGTCATCCTCTGTTTATCAGGATGCACACAGTGG
CTTCTTCCATTCTCTTTATTCTGAGTCTATTGCAGTGGTTGTGCGTTTTC
CTGGCGGCAGTAGTATATCCGGATGATAAAGGTGTGTAGAGAGGGAGGCA
GGATGGGTAAGGGGGGAGGGAGGGAGGGAAGGAGGAATATATTTCGAATG
AAGGTGGGAAGGAGGAGAAGGTATGGGGGACAATGGAGGAAATCCAGCAG
AGAATGAATAAATACACACGCACTTTAACTGTATGCCATCCTCTTCTATT
CCTCTCACTCTCCTTCCCTTCGCCACATCTCAGCTCTTGCCCCCTACCTC
CTCCTCCTCTTTCCAGTGGGAAGCCTTCTACTGGCCCTCCTTCTCGTCTC
CCTCTACCTCCGACGACAACAAAAGCAGCTGGCCCGTGCGTTGCGTCCTC
CCTTTCTCCGGGTGGATGAGGAGGAAGGAAGGAGTGCGGGAGGGAAAGAG
GACAACCGACTGCCGCCCACCAGTCCTCTTCTGACGAGTCTATAGGGCTT
CGAACGTAGATATGAGGAGGGGGGAGGAAAGAAGGGCGAGAGAGAGAAGG
GGAAAAAAGGGAAGAAAGAAAGAAACAAATTATGCTTTGAGT
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Coding sequence (CDS) from alignment at scaffold_3:1415690..1417231-

>mRNA_576 ID=mRNA_576|Name=jgi.p|Nanoce1779_2|577812|organism=Nannochloropsis oceanica|type=CDS|length=3060bp|location=Sequence derived from alignment at scaffold_3:1415690..1417231- (Nannochloropsis oceanica)
CTCTTGCCCCCTACCTCCTCCTCCTCTTTCCAGTGGGAAGCCTTCTACTG
GCCCTCCTTCTCGTCTCCCTCTACCTCCGACGACAACAAAAGCAGCTGGC
CCGTGCGTTGCGTCCTCCCTTTCTCCGGGTGGATGAGGAGGAAGGAAGGA
GTGCGGGAGGGAAAGAGGACAACCGACTGCCGCCCACCAGTCCTCTTCTG
ACGAGTCTATAGCGATACTCTCTTTTCGTCGTCATTTCAGGTGTGGTTCT
CTCCAATATCTTTTCCCTTGCCCTCGGCCACCCAGCCATGCTGGACGAGG
CGAGAGAACACGTCTCGAGCGAGGAGGAGGAGAGTCATCCTCTGTTTATC
AGGATGCACACAGTGGCTTCTTCCATTCTCTTTATTCTGAGTCTATTGCA
GTGGTTGTGCGTTTTCCTGGCGGCAGTAGTATATCCGGATGATAAAGATG
TCTTCCATAGCCACTGTGAGCCACGAGCAAGCGGTCGTCGCATTTTCTTC
CCATAATCATGAAAGTAAGCCTCTTCTGCCGCCAGCCTCTTCTCCAGTGG
GCGAGTTGTCGTCTTCTCTGCCCTCTTCGTCGTCCCAGTTCTTTCCTCTC
TCTTCGGGTAGTAAGAGTAGCGGCCGCCATTCAAGCAATAGCATCAGCAA
CAATTCACGCAGCAGCACTCATGAAGCTTCGTCATCTTTGTCTCCTTGCA
TCTCGCCATTCTCTTGTTCCCCACGCTTTCGGGACTGGCTGCGGCCTTCC
AAATCCACCGCTACAGTCTCTGCACTATTAGACGTCTGGGTCCCGTGGCT
GGCCTATCTAGCGTTGGGTGTGGGAGCAAATGATTTTGTTCTTGGCGGGC
TTGTGGCAGCAGGTGTGGCAATGTTGGGGTTTTTATTCCAGGGCTATCGG
TTTCATGGACAGCGGAGTCTGAGGACCTGGCCAAAGGTGCATGGAATGGG
GGTGCTCTTGACCTGGGTGGCCAATGCCGTGTTTGTGGCTGAGGTGGCGT
CGGATGGAGACATCGCCACACTCTTGCCCCCTACCTCCTCCTCCTCTTTC
CAGTGGGAAGCCTTCTACTGGCCCTCCTTCTCGTCTCCCTCTACCTCCGA
CGACAACAAAAGCAGCTGGCCCGTGCGTTGCGTCCTCCCTTTCTCCGGGT
GGATGAGGAGGAAGGAAGGAGTGCGGGAGGGAAAGAGGACAACCGACTGC
CGCCCACCAGTCCTCTTCTGACGAGTCTATAGCGATACTCTCTTTTCGTC
GTCATTTCAGGTGTGGTTCTCTCCAATATCTTTTCCCTTGCCCTCGGCCA
CCCAGCCATGCTGGACGAGGCGAGAGAACACGTCTCGAGCGAGGAGGAGG
AGAGTCATCCTCTGTTTATCAGGATGCACACAGTGGCTTCTTCCATTCTC
TTTATTCTGAGTCTATTGCAGTGGTTGTGCGTTTTCCTGGCGGCAGTAGT
ATATCCGGATGATAAAGATGTCTTCCATAGCCACTGTGAGCCACGAGCAA
GCGGTCGTCGCATTTTCTTCCCATAATCATGAAAGTAAGCCTCTTCTGCC
GCCAGCCTCTTCTCCAGTGGGCGAGTTGTCGTCTTCTCTGCCCTCTTCGT
CGTCCCAGTTCTTTCCTCTCTCTTCGGGTAGTAAGAGTAGCGGCCGCCAT
TCAAGCAATAGCATCAGCAACAATTCACGCAGCAGCACTCATGAAGCTTC
GTCATCTTTGTCTCCTTGCATCTCGCCATTCTCTTGTTCCCCACGCTTTC
GGGACTGGCTGCGGCCTTCCAAATCCACCGCTACAGTCTCTGCACTATTA
GACGTCTGGGTCCCGTGGCTGGCCTATCTAGCGTTGGGTGTGGGAGCAAA
TGATTTTGTTCTTGGCGGGCTTGTGGCAGCAGGTGTGGCAATGTTGGGGT
TTTTATTCCAGGGCTATCGGTTTCATGGACAGCGGAGTCTGAGGACCTGG
CCAAAGGTGCATGGAATGGGGGTGCTCTTGACCTGGGTGGCCAATGCCGT
GTTTGTGGCTGAGGTGGCGTCGGATGGAGACATCGCCACACTCTTGCCCC
CTACCTCCTCCTCCTCTTTCCAGTGGGAAGCCTTCTACTGGCCCTCCTTC
TCGTCTCCCTCTACCTCCGACGACAACAAAAGCAGCTGGCCCGTGCGTTG
CGTCCTCCCTTTCTCCGGGTGGATGAGGAGGAAGGAAGGAGTGCGGGAGG
GAAAGAGGACAACCGACTGCCGCCCACCAGTCCTCTTCTGACGAGTCTAT
AGCGATACTCTCTTTTCGTCGTCATTTCAGGTGTGGTTCTCTCCAATATC
TTTTCCCTTGCCCTCGGCCACCCAGCCATGCTGGACGAGGCGAGAGAACA
CGTCTCGAGCGAGGAGGAGGAGAGTCATCCTCTGTTTATCAGGATGCACA
CAGTGGCTTCTTCCATTCTCTTTATTCTGAGTCTATTGCAGTGGTTGTGC
GTTTTCCTGGCGGCAGTAGTATATCCGGATGATAAAGATGTCTTCCATAG
CCACTGTGAGCCACGAGCAAGCGGTCGTCGCATTTTCTTCCCATAATCAT
GAAAGTAAGCCTCTTCTGCCGCCAGCCTCTTCTCCAGTGGGCGAGTTGTC
GTCTTCTCTGCCCTCTTCGTCGTCCCAGTTCTTTCCTCTCTCTTCGGGTA
GTAAGAGTAGCGGCCGCCATTCAAGCAATAGCATCAGCAACAATTCACGC
AGCAGCACTCATGAAGCTTCGTCATCTTTGTCTCCTTGCATCTCGCCATT
CTCTTGTTCCCCACGCTTTCGGGACTGGCTGCGGCCTTCCAAATCCACCG
CTACAGTCTCTGCACTATTAGACGTCTGGGTCCCGTGGCTGGCCTATCTA
GCGTTGGGTGTGGGAGCAAATGATTTTGTTCTTGGCGGGCTTGTGGCAGC
AGGTGTGGCAATGTTGGGGTTTTTATTCCAGGGCTATCGGTTTCATGGAC
AGCGGAGTCTGAGGACCTGGCCAAAGGTGCATGGAATGGGGGTGCTCTTG
ACCTGGGTGGCCAATGCCGTGTTTGTGGCTGAGGTGGCGTCGGATGGAGA
CATCGCCACA
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Synonyms
Publications