jgi.p|Nanoce1779_2|590218, mRNA_5759 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|590218
Unique NamemRNA_5759
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length716
Alignment locationscaffold_11:511620..512335 +

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Properties
Property NameValue
TranscriptId590304
TrackFilteredModels2
ProteinId590218
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:511620..512335 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590218gene_5759Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590218mRNA_5759-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5759CDS_5759Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5759 ID=mRNA_5759|Name=jgi.p|Nanoce1779_2|590218|organism=Nannochloropsis oceanica|type=mRNA|length=716bp
ATCGCACATTAGTTCTTTGGTTCTACTTTTGGCGTGTGTGTGTTAAATAC
TGCAACAAGCCCTGAAATCTTAATATGAAAAGCTAATGTGAAGGAGGCAT
GATAGCAAAGGTGTATGCACAACCTTTTCTTCCTTCTCTTTGCTCAGTTA
TTCAGCATACGCTCTCTTTGGCCCCTTCTACAGTCCCCATTTTTTAGCGT
AGTTGGCAACGCCTCCAAGTCCGCCAGCAACTTGTTGATGCGCGCAAGCC
GCGCCTTGCGACGGGCAGAAGCAGTCGCGCTCTTGAGAATGCGTCGTCGC
CGTTCTTCTACCACAGGCACTTGTAATTTTTCCCCGGGTCGCTTTTCCCG
TAAAACCGCTGCTGCTGTAGTTCGCCCTCCGTGTCCGTGCTCGGTTGAGG
TGGCCGCCTTACTGTGTGCCACCATCTTTGCTTGCAGTGCCAGCTCAAAC
AAAGGTGTTCTGAACCCTGGCGCCGCCACCTCCACACGTGCAGGTGCTTC
CACAAAATTGTATTCCTCCTCCTGCTCCAAGCTCCGGACGACCTCCTCCT
CAGGCATCAGCACAGGGGGGGCATCGCTCATTTGCTCTTGCCGGATTTGT
TCCATCAAGCTGGCCGCCAAGTCCAGATGAGGATTCAAGCTTGTAGACGA
AACGCTTGCGCCCTCCTTTGCTAGTATCTCATATGCCTCCTCCTCCTCCT
CCTCCTCCTCCTCCTC
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protein sequence of jgi.p|Nanoce1779_2|590218

>mRNA_5759-protein ID=mRNA_5759-protein|Name=jgi.p|Nanoce1779_2|590218|organism=Nannochloropsis oceanica|type=polypeptide|length=172bp
MHNLFFLLFAQLFSIRSLWPLLQSPFFSVVGNASKSASNLLMRASRALRR
AEAVALLRMRRRRSSTTGTCNFSPGRFSRKTAAAVVRPPCPCSVEVAALL
CATIFACSASSNKGVLNPGAATSTRAGASTKLYSSSCSKLRTTSSSGIST
GGASLICSCRICSIKLAAKSR*
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mRNA from alignment at scaffold_11:511620..512335+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5759 ID=mRNA_5759|Name=jgi.p|Nanoce1779_2|590218|organism=Nannochloropsis oceanica|type=mRNA|length=716bp|location=Sequence derived from alignment at scaffold_11:511620..512335+ (Nannochloropsis oceanica)
ATCGCACATTAGTTCTTTGGTTCTACTTTTGGCGTGTGTGTGTTAAATAC
TGCAACAAGCCCTGAAATCTTAATATGAAAAGCTAATGTGAAGGAGGCAT
GATAGCAAAGGTGTATGCACAACCTTTTCTTCCTTCTCTTTGCTCAGTTA
TTCAGCATACGCTCTCTTTGGCCCCTTCTACAGTCCCCATTTTTTAGCGT
AGTTGGCAACGCCTCCAAGTCCGCCAGCAACTTGTTGATGCGCGCAAGCC
GCGCCTTGCGACGGGCAGAAGCAGTCGCGCTCTTGAGAATGCGTCGTCGC
CGTTCTTCTACCACAGGCACTTGTAATTTTTCCCCGGGTCGCTTTTCCCG
TAAAACCGCTGCTGCTGTAGTTCGCCCTCCGTGTCCGTGCTCGGTTGAGG
TGGCCGCCTTACTGTGTGCCACCATCTTTGCTTGCAGTGCCAGCTCAAAC
AAAGGTGTTCTGAACCCTGGCGCCGCCACCTCCACACGTGCAGGTGCTTC
CACAAAATTGTATTCCTCCTCCTGCTCCAAGCTCCGGACGACCTCCTCCT
CAGGCATCAGCACAGGGGGGGCATCGCTCATTTGCTCTTGCCGGATTTGT
TCCATCAAGCTGGCCGCCAAGTCCAGATGAGGATTCAAGCTTGTAGACGA
AACGCTTGCGCCCTCCTTTGCTAGTATCTCATATGCCTCCTCCTCCTCCT
CCTCCTCCTCCTCCTC
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Coding sequence (CDS) from alignment at scaffold_11:511620..512335+

>mRNA_5759 ID=mRNA_5759|Name=jgi.p|Nanoce1779_2|590218|organism=Nannochloropsis oceanica|type=CDS|length=516bp|location=Sequence derived from alignment at scaffold_11:511620..512335+ (Nannochloropsis oceanica)
ATGCACAACCTTTTCTTCCTTCTCTTTGCTCAGTTATTCAGCATACGCTC
TCTTTGGCCCCTTCTACAGTCCCCATTTTTTAGCGTAGTTGGCAACGCCT
CCAAGTCCGCCAGCAACTTGTTGATGCGCGCAAGCCGCGCCTTGCGACGG
GCAGAAGCAGTCGCGCTCTTGAGAATGCGTCGTCGCCGTTCTTCTACCAC
AGGCACTTGTAATTTTTCCCCGGGTCGCTTTTCCCGTAAAACCGCTGCTG
CTGTAGTTCGCCCTCCGTGTCCGTGCTCGGTTGAGGTGGCCGCCTTACTG
TGTGCCACCATCTTTGCTTGCAGTGCCAGCTCAAACAAAGGTGTTCTGAA
CCCTGGCGCCGCCACCTCCACACGTGCAGGTGCTTCCACAAAATTGTATT
CCTCCTCCTGCTCCAAGCTCCGGACGACCTCCTCCTCAGGCATCAGCACA
GGGGGGGCATCGCTCATTTGCTCTTGCCGGATTTGTTCCATCAAGCTGGC
CGCCAAGTCCAGATGA
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Synonyms
Publications