jgi.p|Nanoce1779_2|590211, mRNA_5754 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|590211
Unique NamemRNA_5754
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length717
Alignment locationscaffold_11:498262..498978 -

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Properties
Property NameValue
TranscriptId590297
TrackFilteredModels2
ProteinId590211
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:498262..498978 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590211gene_5754Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590211mRNA_5754-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5754CDS_5754Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5754 ID=mRNA_5754|Name=jgi.p|Nanoce1779_2|590211|organism=Nannochloropsis oceanica|type=mRNA|length=717bp
ACATCACCAACAGCAACACCAATAATGATGTAAACGGTGTTGGCAAGGAG
AGAAGCAGCAGTGTTAATGCAGGCATTGTGGACGGGAAAGGAGCAGAGGG
GTTGTTGAATGCAGGTTTGAAGCAGCAGCAGCAGCAGCAGCAGTCTCTGT
TGGTGCCAGAAATGGGTGGGGGGGGTAGGGAGGATGGTCAGACCAAGGTT
ATGGATGAAAGCAATCTGGTGGACCACCAAGACGGGCTTGCTTCCTCCTT
ATCCGCTTCGGAGGGGACGCTTCTTCAAGACAGCGCTTCTACAACCTCTT
CTTCCACCTCTTCCTCAAGCCTGTCCTCCTCGTCCTCCTCGCCCTCTGCC
TCCATGTCCTCCTCTTTGTCAGGCACAAGACTCACCAGCACCATTATTCG
CCCCTCAAGTGTGTCAGCACCAGTACCCATGACCTCATCCCCTACTAGCT
CCTCCCCGCATTCCTCATTCTCACCCTTACAGCTCCGCCTCTGCTTAGAC
GGCTGTGGGACTGGGGGCCGAGGAAGACCTTACCCTGAGGATAGCCTTGA
AATGAAACGCGATGCAATCAATCAAATGTATAATCGGCTGACGGGTGCGC
GGCATGGAGAAGGGGTCGGAGAGAAGGGAGGAGCTGCTGTTGCTGCTGCT
AGTGGAGGAGGAGGAGGAAGAAGGGAGGGAAGAAGGGTGGAAGGGTTGAC
TGTTGAGGAGTTTGGAG
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protein sequence of jgi.p|Nanoce1779_2|590211

>mRNA_5754-protein ID=mRNA_5754-protein|Name=jgi.p|Nanoce1779_2|590211|organism=Nannochloropsis oceanica|type=polypeptide|length=83bp
MVRPRLWMKAIWWTTKTGLLPPYPLRRGRFFKTALLQPLLPPLPQACPPR
PPRPLPPCPPLCQAQDSPAPLFAPQVCQHQYP*
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mRNA from alignment at scaffold_11:498262..498978-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5754 ID=mRNA_5754|Name=jgi.p|Nanoce1779_2|590211|organism=Nannochloropsis oceanica|type=mRNA|length=717bp|location=Sequence derived from alignment at scaffold_11:498262..498978- (Nannochloropsis oceanica)
ACATCACCAACAGCAACACCAATAATGATGTAAACGGTGTTGGCAAGGAG
AGAAGCAGCAGTGTTAATGCAGGCATTGTGGACGGGAAAGGAGCAGAGGG
GTTGTTGAATGCAGGTTTGAAGCAGCAGCAGCAGCAGCAGCAGTCTCTGT
TGGTGCCAGAAATGGGTGGGGGGGGTAGGGAGGATGGTCAGACCAAGGTT
ATGGATGAAAGCAATCTGGTGGACCACCAAGACGGGCTTGCTTCCTCCTT
ATCCGCTTCGGAGGGGACGCTTCTTCAAGACAGCGCTTCTACAACCTCTT
CTTCCACCTCTTCCTCAAGCCTGTCCTCCTCGTCCTCCTCGCCCTCTGCC
TCCATGTCCTCCTCTTTGTCAGGCACAAGACTCACCAGCACCATTATTCG
CCCCTCAAGTGTGTCAGCACCAGTACCCATGACCTCATCCCCTACTAGCT
CCTCCCCGCATTCCTCATTCTCACCCTTACAGCTCCGCCTCTGCTTAGAC
GGCTGTGGGACTGGGGGCCGAGGAAGACCTTACCCTGAGGATAGCCTTGA
AATGAAACGCGATGCAATCAATCAAATGTATAATCGGCTGACGGGTGCGC
GGCATGGAGAAGGGGTCGGAGAGAAGGGAGGAGCTGCTGTTGCTGCTGCT
AGTGGAGGAGGAGGAGGAAGAAGGGAGGGAAGAAGGGTGGAAGGGTTGAC
TGTTGAGGAGTTTGGAG
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Coding sequence (CDS) from alignment at scaffold_11:498262..498978-

>mRNA_5754 ID=mRNA_5754|Name=jgi.p|Nanoce1779_2|590211|organism=Nannochloropsis oceanica|type=CDS|length=249bp|location=Sequence derived from alignment at scaffold_11:498262..498978- (Nannochloropsis oceanica)
ATGGTCAGACCAAGGTTATGGATGAAAGCAATCTGGTGGACCACCAAGAC
GGGCTTGCTTCCTCCTTATCCGCTTCGGAGGGGACGCTTCTTCAAGACAG
CGCTTCTACAACCTCTTCTTCCACCTCTTCCTCAAGCCTGTCCTCCTCGT
CCTCCTCGCCCTCTGCCTCCATGTCCTCCTCTTTGTCAGGCACAAGACTC
ACCAGCACCATTATTCGCCCCTCAAGTGTGTCAGCACCAGTACCCATGA
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Synonyms
Publications