jgi.p|Nanoce1779_2|36762, mRNA_5752 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|36762
Unique NamemRNA_5752
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length582
Alignment locationscaffold_11:495582..496163 +

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Properties
Property NameValue
TranscriptId36848
TrackFilteredModels2
ProteinId36762
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:495582..496163 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|36762gene_5752Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|36762mRNA_5752-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5752CDS_5752Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5752 ID=mRNA_5752|Name=jgi.p|Nanoce1779_2|36762|organism=Nannochloropsis oceanica|type=mRNA|length=582bp
GACGAGGATCCCTAGTGCTTTAACTCTCGCGTGTCCACCTTGCAAATGCC
CAATCATAACTCCGCGTTTTTCTCTCTCACGATAAATGACCATTCGTTTT
CAAATATCTGTCGCATCTGTGATCCAACGTCTCCTCTTCTCCTTTTCATA
TCCTTTTCTGGGGCTTCCATTGAGGAGCGAGTCTTCCTCTTCAATTTGTT
CTGAAGTGATATATCACTCCGCATGCGAGCTCTGCGCATTTTTTTCTCTT
CTTCTCTCTCTTTCCATTCGCTTTCTTCTTGCTGCCTCTTGCTGTGCTTC
CTTCACAGCTTTCTCGTCGTCCTCGACATGGACGTACACACGTACACACG
TACACACGTACACACGTACACACACACACACACACACACGTACACACGTA
CACACACACACACACACACACACATATATATATTTCATGTTGTAGTACTG
ATCTAAAATCCATAAATTTATTTACCTCATCATCCCTTCCTCCCTGCATG
CATTCACTGATTAAACACCTCAGGGAATGGGGGAAAATCAAAATCTCATC
CCCCTCTTCACCACATCCTACTACCTCCTCGT
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protein sequence of jgi.p|Nanoce1779_2|36762

>mRNA_5752-protein ID=mRNA_5752-protein|Name=jgi.p|Nanoce1779_2|36762|organism=Nannochloropsis oceanica|type=polypeptide|length=120bp
MTIRFQISVASVIQRLLFSFSYPFLGLPLRSESSSSICSEVIYHSACELC
AFFSLLLSLSIRFLLAASCCASFTAFSSSSTWTYTRTHVHTYTRTHTHTH
TRTHVHTHTHTHTYIYFML*
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mRNA from alignment at scaffold_11:495582..496163+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5752 ID=mRNA_5752|Name=jgi.p|Nanoce1779_2|36762|organism=Nannochloropsis oceanica|type=mRNA|length=582bp|location=Sequence derived from alignment at scaffold_11:495582..496163+ (Nannochloropsis oceanica)
GACGAGGATCCCTAGTGCTTTAACTCTCGCGTGTCCACCTTGCAAATGCC
CAATCATAACTCCGCGTTTTTCTCTCTCACGATAAATGACCATTCGTTTT
CAAATATCTGTCGCATCTGTGATCCAACGTCTCCTCTTCTCCTTTTCATA
TCCTTTTCTGGGGCTTCCATTGAGGAGCGAGTCTTCCTCTTCAATTTGTT
CTGAAGTGATATATCACTCCGCATGCGAGCTCTGCGCATTTTTTTCTCTT
CTTCTCTCTCTTTCCATTCGCTTTCTTCTTGCTGCCTCTTGCTGTGCTTC
CTTCACAGCTTTCTCGTCGTCCTCGACATGGACGTACACACGTACACACG
TACACACGTACACACGTACACACACACACACACACACACGTACACACGTA
CACACACACACACACACACACACATATATATATTTCATGTTGTAGTACTG
ATCTAAAATCCATAAATTTATTTACCTCATCATCCCTTCCTCCCTGCATG
CATTCACTGATTAAACACCTCAGGGAATGGGGGAAAATCAAAATCTCATC
CCCCTCTTCACCACATCCTACTACCTCCTCGT
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Coding sequence (CDS) from alignment at scaffold_11:495582..496163+

>mRNA_5752 ID=mRNA_5752|Name=jgi.p|Nanoce1779_2|36762|organism=Nannochloropsis oceanica|type=CDS|length=360bp|location=Sequence derived from alignment at scaffold_11:495582..496163+ (Nannochloropsis oceanica)
ATGACCATTCGTTTTCAAATATCTGTCGCATCTGTGATCCAACGTCTCCT
CTTCTCCTTTTCATATCCTTTTCTGGGGCTTCCATTGAGGAGCGAGTCTT
CCTCTTCAATTTGTTCTGAAGTGATATATCACTCCGCATGCGAGCTCTGC
GCATTTTTTTCTCTTCTTCTCTCTCTTTCCATTCGCTTTCTTCTTGCTGC
CTCTTGCTGTGCTTCCTTCACAGCTTTCTCGTCGTCCTCGACATGGACGT
ACACACGTACACACGTACACACGTACACACGTACACACACACACACACAC
ACACGTACACACGTACACACACACACACACACACACACATATATATATTT
CATGTTGTAG
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Synonyms
Publications