jgi.p|Nanoce1779_2|647113, mRNA_5751 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|647113
Unique Name	mRNA_5751
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2019
Alignment location	scaffold_11:492917..495269 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	647199
Track	FilteredModels2
ProteinId	647113

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_11	supercontig	scaffold_11:492917..495269 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|647113	gene_5751	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|647113	mRNA_5751-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5751	CDS_5751	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_11:492917..495269+
coding sequence from alignment at scaffold_11:492917..495269+

mRNA sequence

>mRNA_5751 ID=mRNA_5751|Name=jgi.p|Nanoce1779_2|647113|organism=Nannochloropsis oceanica|type=mRNA|length=2019bp
TGTATATATATACTTCCATTCTCACGCTCCCATAATCTAAGCACTCGCTC
TGAGTGCGGGTTTATATTTTTATACATATGCTTCGATTCATCAGAAGTGC
GGGCTGCCTACCCGAGAGGCTGCAGCGCCAGCAATGGCTATCGGCATCAG
GCAACAAACTGTACCGATACAAGGCAAGTAAACAAGCTAGCAATACCACC
ATCAAGAAGGCACTCTCCGTACTGCAGCATCGCAGCCATGGTGAACCGGA
GCATCAGCTGCAAGCGTTCCTGTCCCACCGATATGCCTGTTCCTGCTCCT
ATTCCTTCTGCTGCTGCCCTCCCTTCTACTTTTGCGGCGGCTGATGCTAC
TGCAACTACTGCCGCTTCTTCCTCTGTCATAGCGGCCGACAACGACCCCC
GCATCAGGCACCTCCACGATGCCGCGGCAACCTTGAGCTCGATGGCCTTA
GTAGATACAAACGACCTGCGTGCTATTAGCATTCTGAACGAGGTAACGGC
GGATGGCGAGCTAGAGATTCTGCTGGAAAACACGGCCCCCGAGCTGCTCG
ACGCCATTGCCGACGCTTTGGACCGGTATAACGCTCCCATGCTGCACGTT
TTGCAGGCTTGGCACAAGAAGCAAAAATCTGCTTTGTCTCCAGCCTTCAA
CCCGTTTGGTCATGAAAATGGACACGGACCACATGTGCAGCCGCACCCTG
CAAAGAGCAATACCATCGATCGACCACCATACGCCAAAAACGCAAAGATT
ACACCTCCATGGCTGGACATCGCCGAACGTCACGTCACCCAGCAAGATCC
CGGCCCGTTTGTGCTAGGGCTTCTGTCTGTACTTCGTAACCTCTCTTACA
TCGTGGCAAACGAGGAAATTATCGCCCGTCACACGCGCATCCTCACACAT
CTCGTCAGCCTCGTGCCCTGCGCATACCAAGACGGCGACAGCGTCCCGAC
GGGTGGACGCTGGCCACAGAGCAGTGGCACCAAGAAAGTCAGGAAAGGGA
ATGGGGGCAAGATCGGGACATGTGTTTTTGACTTACTTTTGGCGCTTTCT
TCCCGATTGAACGTGGTAGGCCTTGTGCTGGATGAGCACGAGCCGCTGGC
AGCGGAGAGCGTGCCAGAAGATAGCCTCATGCTATTAGCCCCTGCAAGAA
TACGTTCACAGTACATTCAATTCCATAACCTATCTCTCGAACAAGAAGAC
TTCACCAGGGTAGTCCAGTCATTATTAAGGCTTTTGATGGACTTGTTGAC
TTATCCTGCCGCTGGTGCTGCTTGCGCTGCTGCAACTGCTGGAGGTGCAG
GAAATCGACAGGGTGTCCATTGTTGCCTGGAACTCTTAGCCCGATTGATG
ACTGAACATGAGTCGAACGCTCTACTGGTCGCTAGGCTTGCTTCTCCTGA
TTTTCTAGTTCGTCTGCATGAGTTATTTTATGTGCCTCTGCACGGATTGG
ACTCCATGGAAGGCCCAGGGCCGGCTGCGACATTGCCCGCAGGAAAAAAA
CGCCTGCGATATGTAATGCTTGGTGGGAAGAAAGAGCAGCAACAGCAACA
ACACCAACAAAAGAATGGTGGTGGTGGTGAGATGGACGCCGAGGTACGGG
GGTTGAGCTTAGAAGTTCTTGCGGCACTGTGTTCTGTTTCAATTGCAACG
ACCATGGAAATGGAGGGAGAGACAGAAGAAGAGCTGAGAGAGGGCCGTAT
GGAGGGAGGATTCCGTGACAATGGTAATGGCCAAAAAGATGTCATCGAAC
GTCTCTTAAAGCACGTGCCTGGTTTAGTGCGTTCTCTGATCCTATTGCTT
GATGTTTCGACCGCGGCATCACTGGCCGGTCGTCTTTTGGCCACGCTGGC
GAGGGGAGACGACAAAGGCCGGGAAGCGCTAGAGAATCATAAACGGTTGC
TGACATATTACGCTTTCCGACCGGGGGGGGAGATTGCGGCGAAACTGTTG
TGGTCTGTATTTCTGGCGCCCGAGGAGGAGGAGGAGGAGGAGGAGGAGAA
GGAAGAGGGGGAGGAATAA

protein sequence of jgi.p|Nanoce1779_2|647113

>mRNA_5751-protein ID=mRNA_5751-protein|Name=jgi.p|Nanoce1779_2|647113|organism=Nannochloropsis oceanica|type=polypeptide|length=673bp
CIYILPFSRSHNLSTRSECGFIFLYICFDSSEVRAAYPRGCSASNGYRHQ
ATNCTDTRQVNKLAIPPSRRHSPYCSIAAMVNRSISCKRSCPTDMPVPAP
IPSAAALPSTFAAADATATTAASSSVIAADNDPRIRHLHDAAATLSSMAL
VDTNDLRAISILNEVTADGELEILLENTAPELLDAIADALDRYNAPMLHV
LQAWHKKQKSALSPAFNPFGHENGHGPHVQPHPAKSNTIDRPPYAKNAKI
TPPWLDIAERHVTQQDPGPFVLGLLSVLRNLSYIVANEEIIARHTRILTH
LVSLVPCAYQDGDSVPTGGRWPQSSGTKKVRKGNGGKIGTCVFDLLLALS
SRLNVVGLVLDEHEPLAAESVPEDSLMLLAPARIRSQYIQFHNLSLEQED
FTRVVQSLLRLLMDLLTYPAAGAACAAATAGGAGNRQGVHCCLELLARLM
TEHESNALLVARLASPDFLVRLHELFYVPLHGLDSMEGPGPAATLPAGKK
RLRYVMLGGKKEQQQQQHQQKNGGGGEMDAEVRGLSLEVLAALCSVSIAT
TMEMEGETEEELREGRMEGGFRDNGNGQKDVIERLLKHVPGLVRSLILLL
DVSTAASLAGRLLATLARGDDKGREALENHKRLLTYYAFRPGGEIAAKLL
WSVFLAPEEEEEEEEEKEEGEE*

mRNA from alignment at scaffold_11:492917..495269+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5751 ID=mRNA_5751|Name=jgi.p|Nanoce1779_2|647113|organism=Nannochloropsis oceanica|type=mRNA|length=2353bp|location=Sequence derived from alignment at scaffold_11:492917..495269+ (Nannochloropsis oceanica)
TGTATATATATACTTCCATTCTCACGCTCCCATAATCTAAGCACTCGCTC
TGAGTGCGGGTTTATATTTTTATACATATGCTTCGATTCATCAGAAGGTA
GGCCGCGGCGACAGAGGAGAGGAGAGACAGCATAGTGCTGAGTACGGGGA
ACTGCTGCGGTGGCAGCAGCTGTGTCATGGGTTCTGCAATACTTATAGAA
GAAAATGTGCCGCTGGATGTTTTGAGCCAAGAAGAAAGGGCCTCGTGCAG
GGAGGGGGGTAGTGGGTCGTCGCCACAGACATGGGAGCATACTTCTCTCA
GCCTGCTCTTGTTTCCGCGCCTGACCATACCACGAACCATCTGACGCACC
GCCGTGCTGGCTATCACACCTAGAGCCATGAAGAAACTCACCTGTCCCTC
GTGTATCCTCGCTCTCTACATGCAAACACAGTGCGGGCTGCCTACCCGAG
AGGCTGCAGCGCCAGCAATGGCTATCGGCATCAGGCAACAAACTGTACCG
ATACAAGGCAAGTAAACAAGCTAGCAATACCACCATCAAGAAGGCACTCT
CCGTACTGCAGCATCGCAGCCATGGTGAACCGGAGCATCAGCTGCAAGCG
TTCCTGTCCCACCGATATGCCTGTTCCTGCTCCTATTCCTTCTGCTGCTG
CCCTCCCTTCTACTTTTGCGGCGGCTGATGCTACTGCAACTACTGCCGCT
TCTTCCTCTGTCATAGCGGCCGACAACGACCCCCGCATCAGGCACCTCCA
CGATGCCGCGGCAACCTTGAGCTCGATGGCCTTAGTAGATACAAACGACC
TGCGTGCTATTAGCATTCTGAACGAGGTAACGGCGGATGGCGAGCTAGAG
ATTCTGCTGGAAAACACGGCCCCCGAGCTGCTCGACGCCATTGCCGACGC
TTTGGACCGGTATAACGCTCCCATGCTGCACGTTTTGCAGGCTTGGCACA
AGAAGCAAAAATCTGCTTTGTCTCCAGCCTTCAACCCGTTTGGTCATGAA
AATGGACACGGACCACATGTGCAGCCGCACCCTGCAAAGAGCAATACCAT
CGATCGACCACCATACGCCAAAAACGCAAAGATTACACCTCCATGGCTGG
ACATCGCCGAACGTCACGTCACCCAGCAAGATCCCGGCCCGTTTGTGCTA
GGGCTTCTGTCTGTACTTCGTAACCTCTCTTACATCGTGGCAAACGAGGA
AATTATCGCCCGTCACACGCGCATCCTCACACATCTCGTCAGCCTCGTGC
CCTGCGCATACCAAGACGGCGACAGCGTCCCGACGGGTGGACGCTGGCCA
CAGAGCAGTGGCACCAAGAAAGTCAGGAAAGGGAATGGGGGCAAGATCGG
GACATGTGTTTTTGACTTACTTTTGGCGCTTTCTTCCCGATTGAACGTGG
TAGGCCTTGTGCTGGATGAGCACGAGCCGCTGGCAGCGGAGAGCGTGCCA
GAAGATAGCCTCATGCTATTAGCCCCTGCAAGAATACGTTCACAGTACAT
TCAATTCCATAACCTATCTCTCGAACAAGAAGACTTCACCAGGGTAGTCC
AGTCATTATTAAGGCTTTTGATGGACTTGTTGACTTATCCTGCCGCTGGT
GCTGCTTGCGCTGCTGCAACTGCTGGAGGTGCAGGAAATCGACAGGGTGT
CCATTGTTGCCTGGAACTCTTAGCCCGATTGATGACTGAACATGAGTCGA
ACGCTCTACTGGTCGCTAGGCTTGCTTCTCCTGATTTTCTAGTTCGTCTG
CATGAGTTATTTTATGTGCCTCTGCACGGATTGGACTCCATGGAAGGCCC
AGGGCCGGCTGCGACATTGCCCGCAGGAAAAAAACGCCTGCGATATGTAA
TGCTTGGTGGGAAGAAAGAGCAGCAACAGCAACAACACCAACAAAAGAAT
GGTGGTGGTGGTGAGATGGACGCCGAGGTACGGGGGTTGAGCTTAGAAGT
TCTTGCGGCACTGTGTTCTGTTTCAATTGCAACGACCATGGAAATGGAGG
GAGAGACAGAAGAAGAGCTGAGAGAGGGCCGTATGGAGGGAGGATTCCGT
GACAATGGTAATGGCCAAAAAGATGTCATCGAACGTCTCTTAAAGCACGT
GCCTGGTTTAGTGCGTTCTCTGATCCTATTGCTTGATGTTTCGACCGCGG
CATCACTGGCCGGTCGTCTTTTGGCCACGCTGGCGAGGGGAGACGACAAA
GGCCGGGAAGCGCTAGAGAATCATAAACGGTTGCTGACATATTACGCTTT
CCGACCGGGGGGGGAGATTGCGGCGAAACTGTTGTGGTCTGTATTTCTGG
CGCCCGAGGAGGAGGAGGAGGAGGAGGAGGAGAAGGAAGAGGGGGAGGAA
TAA

Coding sequence (CDS) from alignment at scaffold_11:492917..495269+

>mRNA_5751 ID=mRNA_5751|Name=jgi.p|Nanoce1779_2|647113|organism=Nannochloropsis oceanica|type=CDS|length=4038bp|location=Sequence derived from alignment at scaffold_11:492917..495269+ (Nannochloropsis oceanica)
TGTATATATATACTTCCATTCTCACGCTCCCATAATCTAAGCACTCGCTC
TGAGTGCGGGTTTATATTTTTATACATATGCTTCGATTCATCAGAAGTGC
GGGCTGCCTACCCGAGAGGCTGCAGCGCCAGCAATGGCTATCGGCATCAG
GCAACAAACTGTACCGATACAAGGCAAGTAAACAAGCTAGCAATACCACC
ATCAAGAAGGCACTCTCCGTACTGCAGCATCGCAGCCATGGTGAACCGGA
GCATCAGCTGCAAGCGTTCCTGTCCCACCGATATGCCTGTTCCTGCTCCT
ATTCCTTCTGCTGCTGCCCTCCCTTCTACTTTTGCGGCGGCTGATGCTAC
TGCAACTACTGCCGCTTCTTCCTCTGTCATAGCGGCCGACAACGACCCCC
GCATCAGGCACCTCCACGATGCCGCGGCAACCTTGAGCTCGATGGCCTTA
GTAGATACAAACGACCTGCGTGCTATTAGCATTCTGAACGAGGTAACGGC
GGATGGCGAGCTAGAGATTCTGCTGGAAAACACGGCCCCCGAGCTGCTCG
ACGCCATTGCCGACGCTTTGGACCGGTATAACGCTCCCATGCTGCACGTT
TTGCAGGCTTGGCACAAGAAGCAAAAATCTGCTTTGTCTCCAGCCTTCAA
CCCGTTTGGTCATGAAAATGGACACGGACCACATGTGCAGCCGCACCCTG
CAAAGAGCAATACCATCGATCGACCACCATACGCCAAAAACGCAAAGATT
ACACCTCCATGGCTGGACATCGCCGAACGTCACGTCACCCAGCAAGATCC
CGGCCCGTTTGTGCTAGGGCTTCTGTCTGTACTTCGTAACCTCTCTTACA
TCGTGGCAAACGAGGAAATTATCGCCCGTCACACGCGCATCCTCACACAT
CTCGTCAGCCTCGTGCCCTGCGCATACCAAGACGGCGACAGCGTCCCGAC
GGGTGGACGCTGGCCACAGAGCAGTGGCACCAAGAAAGTCAGGAAAGGGA
ATGGGGGCAAGATCGGGACATGTGTTTTTGACTTACTTTTGGCGCTTTCT
TCCCGATTGAACGTGGTAGGCCTTGTGCTGGATGAGCACGAGCCGCTGGC
AGCGGAGAGCGTGCCAGAAGATAGCCTCATGCTATTAGCCCCTGCAAGAA
TACGTTCACAGTACATTCAATTCCATAACCTATCTCTCGAACAAGAAGAC
TTCACCAGGGTAGTCCAGTCATTATTAAGGCTTTTGATGGACTTGTTGAC
TTATCCTGCCGCTGGTGCTGCTTGCGCTGCTGCAACTGCTGGAGGTGCAG
GAAATCGACAGGGTGTCCATTGTTGCCTGGAACTCTTAGCCCGATTGATG
ACTGAACATGAGTCGAACGCTCTACTGGTCGCTAGGCTTGCTTCTCCTGA
TTTTCTAGTTCGTCTGCATGAGTTATTTTATGTGCCTCTGCACGGATTGG
ACTCCATGGAAGGCCCAGGGCCGGCTGCGACATTGCCCGCAGGAAAAAAA
CGCCTGCGATATGTAATGCTTGGTGGGAAGAAAGAGCAGCAACAGCAACA
ACACCAACAAAAGAATGGTGGTGGTGGTGAGATGGACGCCGAGGTACGGG
GGTTGAGCTTAGAAGTTCTTGCGGCACTGTGTTCTGTTTCAATTGCAACG
ACCATGGAAATGGAGGGAGAGACAGAAGAAGAGCTGAGAGAGGGCCGTAT
GGAGGGAGGATTCCGTGACAATGGTAATGGCCAAAAAGATGTCATCGAAC
GTCTCTTAAAGCACGTGCCTGGTTTAGTGCGTTCTCTGATCCTATTGCTT
GATGTTTCGACCGCGGCATCACTGGCCGGTCGTCTTTTGGCCACGCTGGC
GAGGGGAGACGACAAAGGCCGGGAAGCGCTAGAGAATCATAAACGGTTGC
TGACATATTACGCTTTCCGACCGGGGGGGGAGATTGCGGCGAAACTGTTG
TGGTCTGTATTTCTGGCGCCCGAGGAGGAGGAGGAGGAGGAGGAGGAGAA
GGAAGAGGGGGAGGAATAATGTATATATATACTTCCATTCTCACGCTCCC
ATAATCTAAGCACTCGCTCTGAGTGCGGGTTTATATTTTTATACATATGC
TTCGATTCATCAGAAGTGCGGGCTGCCTACCCGAGAGGCTGCAGCGCCAG
CAATGGCTATCGGCATCAGGCAACAAACTGTACCGATACAAGGCAAGTAA
ACAAGCTAGCAATACCACCATCAAGAAGGCACTCTCCGTACTGCAGCATC
GCAGCCATGGTGAACCGGAGCATCAGCTGCAAGCGTTCCTGTCCCACCGA
TATGCCTGTTCCTGCTCCTATTCCTTCTGCTGCTGCCCTCCCTTCTACTT
TTGCGGCGGCTGATGCTACTGCAACTACTGCCGCTTCTTCCTCTGTCATA
GCGGCCGACAACGACCCCCGCATCAGGCACCTCCACGATGCCGCGGCAAC
CTTGAGCTCGATGGCCTTAGTAGATACAAACGACCTGCGTGCTATTAGCA
TTCTGAACGAGGTAACGGCGGATGGCGAGCTAGAGATTCTGCTGGAAAAC
ACGGCCCCCGAGCTGCTCGACGCCATTGCCGACGCTTTGGACCGGTATAA
CGCTCCCATGCTGCACGTTTTGCAGGCTTGGCACAAGAAGCAAAAATCTG
CTTTGTCTCCAGCCTTCAACCCGTTTGGTCATGAAAATGGACACGGACCA
CATGTGCAGCCGCACCCTGCAAAGAGCAATACCATCGATCGACCACCATA
CGCCAAAAACGCAAAGATTACACCTCCATGGCTGGACATCGCCGAACGTC
ACGTCACCCAGCAAGATCCCGGCCCGTTTGTGCTAGGGCTTCTGTCTGTA
CTTCGTAACCTCTCTTACATCGTGGCAAACGAGGAAATTATCGCCCGTCA
CACGCGCATCCTCACACATCTCGTCAGCCTCGTGCCCTGCGCATACCAAG
ACGGCGACAGCGTCCCGACGGGTGGACGCTGGCCACAGAGCAGTGGCACC
AAGAAAGTCAGGAAAGGGAATGGGGGCAAGATCGGGACATGTGTTTTTGA
CTTACTTTTGGCGCTTTCTTCCCGATTGAACGTGGTAGGCCTTGTGCTGG
ATGAGCACGAGCCGCTGGCAGCGGAGAGCGTGCCAGAAGATAGCCTCATG
CTATTAGCCCCTGCAAGAATACGTTCACAGTACATTCAATTCCATAACCT
ATCTCTCGAACAAGAAGACTTCACCAGGGTAGTCCAGTCATTATTAAGGC
TTTTGATGGACTTGTTGACTTATCCTGCCGCTGGTGCTGCTTGCGCTGCT
GCAACTGCTGGAGGTGCAGGAAATCGACAGGGTGTCCATTGTTGCCTGGA
ACTCTTAGCCCGATTGATGACTGAACATGAGTCGAACGCTCTACTGGTCG
CTAGGCTTGCTTCTCCTGATTTTCTAGTTCGTCTGCATGAGTTATTTTAT
GTGCCTCTGCACGGATTGGACTCCATGGAAGGCCCAGGGCCGGCTGCGAC
ATTGCCCGCAGGAAAAAAACGCCTGCGATATGTAATGCTTGGTGGGAAGA
AAGAGCAGCAACAGCAACAACACCAACAAAAGAATGGTGGTGGTGGTGAG
ATGGACGCCGAGGTACGGGGGTTGAGCTTAGAAGTTCTTGCGGCACTGTG
TTCTGTTTCAATTGCAACGACCATGGAAATGGAGGGAGAGACAGAAGAAG
AGCTGAGAGAGGGCCGTATGGAGGGAGGATTCCGTGACAATGGTAATGGC
CAAAAAGATGTCATCGAACGTCTCTTAAAGCACGTGCCTGGTTTAGTGCG
TTCTCTGATCCTATTGCTTGATGTTTCGACCGCGGCATCACTGGCCGGTC
GTCTTTTGGCCACGCTGGCGAGGGGAGACGACAAAGGCCGGGAAGCGCTA
GAGAATCATAAACGGTTGCTGACATATTACGCTTTCCGACCGGGGGGGGA
GATTGCGGCGAAACTGTTGTGGTCTGTATTTCTGGCGCCCGAGGAGGAGG
AGGAGGAGGAGGAGGAGAAGGAAGAGGGGGAGGAATAA

Synonyms

Publications