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Properties
| Property Name | Value |
|---|
| TranscriptId | 555692 |
| Track | FilteredModels2 |
| ProteinId | 555606 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_11 | supercontig | scaffold_11:489131..491208 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5750 ID=mRNA_5750|Name=jgi.p|Nanoce1779_2|555606|organism=Nannochloropsis oceanica|type=mRNA|length=2033bp
ATGTCTCGGGACCCGCGTCTGGGCTCGACACAAACCTGGTGGACCAATGA
GATAGCATTCACCTTTCTGTTTTTCCTGAATCTTCTCAACTACATCGATC
GGGGCATCATCCCGGGGGCCTCTGAAGAATTCAGTGCCTTTGTCTCCGAC
TCACTCGATACGAACACCCCCGACTTGTACGTGGGCCTGCTTCAATCTGC
ATTCATCGTCGGATTTTCCTTGGCGGCCATCTGTTTTGGGCATGTCATTC
ATTTCGTTTCTCCCTTCAAAATGGTGGGTGTTGGGTTAGTCGTATGGATC
CTCGCCGCGGCCTTGAGTGGGTTCGCGCGTCAGGCAGGCTCCTACCAATT
GCTATGTGCAGCACGTATGCTGAGCGGGGTGGGCGAGGCGGGATTTCAGT
GTGTGGCGCCCCCATTTATTTTAGACTTGGGGGGGGGGAGTGCAGGAAGG
TGGATTGCGTTTTTTTACACGGCGATTCCGTTAGGGACTGCGATGGGATA
CCCGTGGGGGGCTTTATTTGCAGCATCGTCGTGGACGTGGTCAGGTGCGT
TTTGGCTGGAGTCGTTGTTGATGAGTCCTTTTGCATTGGCTTGCTTTTTC
TTGCCCTTTACGTGGCGTCCGGAGCGATTGCCAATTGAAAAGGAGGAGTA
TTTGGGGGTGGGGGAGGTGGAGGAAGGGGAGCAGATGGATAGGAACAGCA
GCAGCATCTTAGTAGAGGGACAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCACGAAGAGGAAGAAGTTGTGGAGGAGGCGCGACACATGACCAT
TTTTCGGGAAGCGTGTATTGTTTTGCGTCGGCCCATTTTTTTATTGAATG
CCTTTGGATACGCGGCGAATACGGGGATGATGATCGGGGTGTCCACATTT
TCGAGCAAGATCTTCTTGGATTTCGGATTTTTCACCTCAGAGAGCAGTGC
CTCGAGTGTGTTTGGGGTGGCGCTGTCTTTTGCTGGGATGGTCGGGACTC
CTCTAGGAGGGATATTAGTGGATCGACGGCTGTTTAACTCGGAGGAGGCA
AAGTTGGCGTTTTTGCTGCGACAGAGTACGATCTTTGCGGCGCTTGGATG
TTTCTGCTCGAGTCTAAGCTGTTTTTTGTATCAGCGGGAGCTATTTCTCT
TCTTTTTCGTGATAGGTGCCCTATTGCTCTTTGTGTGCACTGCTTCGATT
AATATGGCCACCATGCTCTCCGTCCCTCCAGCCAATCGCTCCTTTGCGAT
CGCCCTCTGCACTTTGATAATTCACGCGCTGGGCGACGTGCCTTCCCCTA
TCATCGTAGGCGCCATTTTGGATGCCATGGCCCCTGCCTGTGCAGCGGAC
CTGGAAAAAGACGGCGTCGTTTCTCCCGAATGTACAGCTCAAGTCCAGCA
AGTGCGCCAAACCCTCTTTATAACATGCTTGTGGCTGCTGGTGGCCGTTA
TTTGTTGGGGTGTGGGGTGGATGGAGGCAACGCGGCAGTACCGCATGCAC
CATGCGGGGCACCACCATCCTTTGGAGGTGGATGGCGGGGGTAGTGATGA
ATACGCGGGCGAGGAGATGGGAACAAAGCAGCCGCTTTTGCCATTAACCA
AGAAGACGGATTCGAGCAGCAGCAGCAGTCAGACAATATGACATAAATGT
AAATGTGCGAGTATATAGGTGTAGAGGACTAGAAGGAGAGGGAGAGCTAT
CAGCGGCAGGACAGCGGGGTATAATGGTGCGAAGCGCAGAGAAGAAATGA
ATGTGTTAAACGTGTGTATAATCTTTCACTGTTTGTTCTCTGAAAGTGTA
CTGAAAAAAATGAGAAAAAGAATAAAAACAAAGAAAGAGATAAGAAAAAA
CAAATTAAAAAGCTCCGCAGGCTCAAGGGATGTCGCGAGGCCGGAAGACC
AACAAGCAAGAGGTGGCAGAGGAGGGGGGCCAGGTATCTAGTCTGATGGA
AGTTTTCTACAGACCATAACTTGCGACCAATGATGACATGGGGAAAAGCT
TTTGATACAGATGGACTTCGAATGGTGCGACAC back to topprotein sequence of jgi.p|Nanoce1779_2|555606 >mRNA_5750-protein ID=mRNA_5750-protein|Name=jgi.p|Nanoce1779_2|555606|organism=Nannochloropsis oceanica|type=polypeptide|length=547bp
MSRDPRLGSTQTWWTNEIAFTFLFFLNLLNYIDRGIIPGASEEFSAFVSD
SLDTNTPDLYVGLLQSAFIVGFSLAAICFGHVIHFVSPFKMVGVGLVVWI
LAAALSGFARQAGSYQLLCAARMLSGVGEAGFQCVAPPFILDLGGGSAGR
WIAFFYTAIPLGTAMGYPWGALFAASSWTWSGAFWLESLLMSPFALACFF
LPFTWRPERLPIEKEEYLGVGEVEEGEQMDRNSSSILVEGQQQQQQQQQQ
QQHEEEEVVEEARHMTIFREACIVLRRPIFLLNAFGYAANTGMMIGVSTF
SSKIFLDFGFFTSESSASSVFGVALSFAGMVGTPLGGILVDRRLFNSEEA
KLAFLLRQSTIFAALGCFCSSLSCFLYQRELFLFFFVIGALLLFVCTASI
NMATMLSVPPANRSFAIALCTLIIHALGDVPSPIIVGAILDAMAPACAAD
LEKDGVVSPECTAQVQQVRQTLFITCLWLLVAVICWGVGWMEATRQYRMH
HAGHHHPLEVDGGGSDEYAGEEMGTKQPLLPLTKKTDSSSSSSQTI* back to topmRNA from alignment at scaffold_11:489131..491208- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5750 ID=mRNA_5750|Name=jgi.p|Nanoce1779_2|555606|organism=Nannochloropsis oceanica|type=mRNA|length=2078bp|location=Sequence derived from alignment at scaffold_11:489131..491208- (Nannochloropsis oceanica)
ATGTCTCGGGACCCGCGTCTGGGCTCGACACAAACCTGGTGGACCAATGA
GATAGCATTCACCTTTCTGTTTTTCCTGAATCTTCTCAACTACATCGATC
GGGGCATCATCCCGGGGGCCTCTGAAGAATTCAGTGCCTTTGTCTCCGAC
TCACTCGATACGAACACCCCCGACTTGTACGTGGGCCTGCTTCAATCTGC
ATTCATCGTCGGATTTTCCTTGGCGGCCATCTGTTTTGGGCATGTCATTC
ATTTCGTTTCTCCCTTCAAAATGGTGGGTGTTGGGTTAGTCGTATGGATC
CTCGCCGCGGCCTTGAGTGGGTTCGCGCGTCAGGCAGGCTCCTACCAATT
GCTATGTGCAGCACGTATGCTGAGCGGGGTGGGCGAGGCGGGATTTCAGT
GTGTGGCGCCCCCATTTATTTTAGACTTGGGGGGGGGGAGTGCAGGAAGG
TGGATTGCGTTTTTTTACACGGCGATTCCGTTAGGGACTGCGATGGGATA
CCCGTGGGGGGCTTTATTTGCAGCATCGTCGTGGACGTGGTCAGGTGCGT
TTTGGCTGGAGTCGTTGTTGATGAGTCCTTTTGCATTGGCTTGCTTTTTC
TTGCCCTTTACGTGGCGTCCGGAGCGATTGCCAATTGAAAAGGAGGAGTA
TTTGGGGGTGGGGGAGGTGGAGGAAGGGGAGCAGAGTGTTAGGGAAAAGG
GAGGCGCAGCAGCAGTATTGGCTATATCAGTGGATAGGAACAGCAGCAGC
ATCTTAGTAGAGGGACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCACGAAGAGGAAGAAGTTGTGGAGGAGGCGCGACACATGACCATTTTTC
GGGAAGCGTGTATTGTTTTGCGTCGGCCCATTTTTTTATTGAATGCCTTT
GGATACGCGGCGAATACGGGGATGATGATCGGGGTGTCCACATTTTCGAG
CAAGATCTTCTTGGATTTCGGATTTTTCACCTCAGAGAGCAGTGCCTCGA
GTGTGTTTGGGGTGGCGCTGTCTTTTGCTGGGATGGTCGGGACTCCTCTA
GGAGGGATATTAGTGGATCGACGGCTGTTTAACTCGGAGGAGGCAAAGTT
GGCGTTTTTGCTGCGACAGAGTACGATCTTTGCGGCGCTTGGATGTTTCT
GCTCGAGTCTAAGCTGTTTTTTGTATCAGCGGGAGCTATTTCTCTTCTTT
TTCGTGATAGGTGCCCTATTGCTCTTTGTGTGCACTGCTTCGATTAATAT
GGCCACCATGCTCTCCGTCCCTCCAGCCAATCGCTCCTTTGCGATCGCCC
TCTGCACTTTGATAATTCACGCGCTGGGCGACGTGCCTTCCCCTATCATC
GTAGGCGCCATTTTGGATGCCATGGCCCCTGCCTGTGCAGCGGACCTGGA
AAAAGACGGCGTCGTTTCTCCCGAATGTACAGCTCAAGTCCAGCAAGTGC
GCCAAACCCTCTTTATAACATGCTTGTGGCTGCTGGTGGCCGTTATTTGT
TGGGGTGTGGGGTGGATGGAGGCAACGCGGCAGTACCGCATGCACCATGC
GGGGCACCACCATCCTTTGGAGGTGGATGGCGGGGGTAGTGATGAATACG
CGGGCGAGGAGATGGGAACAAAGCAGCCGCTTTTGCCATTAACCAAGAAG
ACGGATTCGAGCAGCAGCAGCAGTCAGACAATATGACATAAATGTAAATG
TGCGAGTATATAGGTGTAGAGGACTAGAAGGAGAGGGAGAGCTATCAGCG
GCAGGACAGCGGGGTATAATGGTGCGAAGCGCAGAGAAGAAATGAATGTG
TTAAACGTGTGTATAATCTTTCACTGTTTGTTCTCTGAAAGTGTACTGAA
AAAAATGAGAAAAAGAATAAAAACAAAGAAAGAGATAAGAAAAAACAAAT
TAAAAAGCTCCGCAGGCTCAAGGGATGTCGCGAGGCCGGAAGACCAACAA
GCAAGAGGTGGCAGAGGAGGGGGGCCAGGTATCTAGTCTGATGGAAGTTT
TCTACAGACCATAACTTGCGACCAATGATGACATGGGGAAAAGCTTTTGA
TACAGATGGACTTCGAATGGTGCGACAC back to topCoding sequence (CDS) from alignment at scaffold_11:489131..491208- >mRNA_5750 ID=mRNA_5750|Name=jgi.p|Nanoce1779_2|555606|organism=Nannochloropsis oceanica|type=CDS|length=3282bp|location=Sequence derived from alignment at scaffold_11:489131..491208- (Nannochloropsis oceanica)
TGGATAGGAACAGCAGCAGCATCTTAGTAGAGGGACAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCACGAAGAGGAAGAAGTTGTGGAGGAGGC
GCGACACATGACCATTTTTCGGGAAGCGTGTATTGTTTTGCGTCGGCCCA
TTTTTTTATTGAATGCCTTTGGATACGCGGCGAATACGGGGATGATGATC
GGGGTGTCCACATTTTCGAGCAAGATCTTCTTGGATTTCGGATTTTTCAC
CTCAGAGAGCAGTGCCTCGAGTGTGTTTGGGGTGGCGCTGTCTTTTGCTG
GGATGGTCGGGACTCCTCTAGGAGGGATATTAGTGGATCGACGGCTGTTT
AACTCGGAGGAGGCAAAGTTGGCGTTTTTGCTGCGACAGAGTACGATCTT
TGCGGCGCTTGGATGTTTCTGCTCGAGTCTAAGCTGTTTTTTGTATCAGC
GGGAGCTATTTCTCTTCTTTTTCGTGATAGGTGCCCTATTGCTCTTTGTG
TGCACTGCTTCGATTAATATGGCCACCATGCTCTCCGTCCCTCCAGCCAA
TCGCTCCTTTGCGATCGCCCTCTGCACTTTGATAATTCACGCGCTGGGCG
ACGTGCCTTCCCCTATCATCGTAGGCGCCATTTTGGATGCCATGGCCCCT
GCCTGTGCAGCGGACCTGGAAAAAGACGGCGTCGTTTCTCCCGAATGTAC
AGCTCAAGTCCAGCAAGTGCGCCAAACCCTCTTTATAACATGCTTGTGGC
TGCTGGTGGCCGTTATTTGTTGGGGTGTGGGGTGGATGGAGGCAACGCGG
CAGTACCGCATGCACCATGCGGGGCACCACCATCCTTTGGAGGTGGATGG
CGGGGGTAGTGATGAATACGCGGGCGAGGAGATGGGAACAAAGCAGCCGC
TTTTGCCATTAACCAAGAAGACGGATTCGAGCAGCAGCAGCAGTCAGACA
ATATGAATGTCTCGGGACCCGCGTCTGGGCTCGACACAAACCTGGTGGAC
CAATGAGATAGCATTCACCTTTCTGTTTTTCCTGAATCTTCTCAACTACA
TCGATCGGGGCATCATCCCGGGGGCCTCTGAAGAATTCAGTGCCTTTGTC
TCCGACTCACTCGATACGAACACCCCCGACTTGTACGTGGGCCTGCTTCA
ATCTGCATTCATCGTCGGATTTTCCTTGGCGGCCATCTGTTTTGGGCATG
TCATTCATTTCGTTTCTCCCTTCAAAATGGTGGGTGTTGGGTTAGTCGTA
TGGATCCTCGCCGCGGCCTTGAGTGGGTTCGCGCGTCAGGCAGGCTCCTA
CCAATTGCTATGTGCAGCACGTATGCTGAGCGGGGTGGGCGAGGCGGGAT
TTCAGTGTGTGGCGCCCCCATTTATTTTAGACTTGGGGGGGGGGAGTGCA
GGAAGGTGGATTGCGTTTTTTTACACGGCGATTCCGTTAGGGACTGCGAT
GGGATACCCGTGGGGGGCTTTATTTGCAGCATCGTCGTGGACGTGGTCAG
GTGCGTTTTGGCTGGAGTCGTTGTTGATGAGTCCTTTTGCATTGGCTTGC
TTTTTCTTGCCCTTTACGTGGCGTCCGGAGCGATTGCCAATTGAAAAGGA
GGAGTATTTGGGGGTGGGGGAGGTGGAGGAAGGGGAGCAGATGGATAGGA
ACAGCAGCAGCATCTTAGTAGAGGGACAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCACGAAGAGGAAGAAGTTGTGGAGGAGGCGCGACACAT
GACCATTTTTCGGGAAGCGTGTATTGTTTTGCGTCGGCCCATTTTTTTAT
TGAATGCCTTTGGATACGCGGCGAATACGGGGATGATGATCGGGGTGTCC
ACATTTTCGAGCAAGATCTTCTTGGATTTCGGATTTTTCACCTCAGAGAG
CAGTGCCTCGAGTGTGTTTGGGGTGGCGCTGTCTTTTGCTGGGATGGTCG
GGACTCCTCTAGGAGGGATATTAGTGGATCGACGGCTGTTTAACTCGGAG
GAGGCAAAGTTGGCGTTTTTGCTGCGACAGAGTACGATCTTTGCGGCGCT
TGGATGTTTCTGCTCGAGTCTAAGCTGTTTTTTGTATCAGCGGGAGCTAT
TTCTCTTCTTTTTCGTGATAGGTGCCCTATTGCTCTTTGTGTGCACTGCT
TCGATTAATATGGCCACCATGCTCTCCGTCCCTCCAGCCAATCGCTCCTT
TGCGATCGCCCTCTGCACTTTGATAATTCACGCGCTGGGCGACGTGCCTT
CCCCTATCATCGTAGGCGCCATTTTGGATGCCATGGCCCCTGCCTGTGCA
GCGGACCTGGAAAAAGACGGCGTCGTTTCTCCCGAATGTACAGCTCAAGT
CCAGCAAGTGCGCCAAACCCTCTTTATAACATGCTTGTGGCTGCTGGTGG
CCGTTATTTGTTGGGGTGTGGGGTGGATGGAGGCAACGCGGCAGTACCGC
ATGCACCATGCGGGGCACCACCATCCTTTGGAGGTGGATGGCGGGGGTAG
TGATGAATACGCGGGCGAGGAGATGGGAACAAAGCAGCCGCTTTTGCCAT
TAACCAAGAAGACGGATTCGAGCAGCAGCAGCAGTCAGACAATATGAATG
TCTCGGGACCCGCGTCTGGGCTCGACACAAACCTGGTGGACCAATGAGAT
AGCATTCACCTTTCTGTTTTTCCTGAATCTTCTCAACTACATCGATCGGG
GCATCATCCCGGGGGCCTCTGAAGAATTCAGTGCCTTTGTCTCCGACTCA
CTCGATACGAACACCCCCGACTTGTACGTGGGCCTGCTTCAATCTGCATT
CATCGTCGGATTTTCCTTGGCGGCCATCTGTTTTGGGCATGTCATTCATT
TCGTTTCTCCCTTCAAAATGGTGGGTGTTGGGTTAGTCGTATGGATCCTC
GCCGCGGCCTTGAGTGGGTTCGCGCGTCAGGCAGGCTCCTACCAATTGCT
ATGTGCAGCACGTATGCTGAGCGGGGTGGGCGAGGCGGGATTTCAGTGTG
TGGCGCCCCCATTTATTTTAGACTTGGGGGGGGGGAGTGCAGGAAGGTGG
ATTGCGTTTTTTTACACGGCGATTCCGTTAGGGACTGCGATGGGATACCC
GTGGGGGGCTTTATTTGCAGCATCGTCGTGGACGTGGTCAGGTGCGTTTT
GGCTGGAGTCGTTGTTGATGAGTCCTTTTGCATTGGCTTGCTTTTTCTTG
CCCTTTACGTGGCGTCCGGAGCGATTGCCAATTGAAAAGGAGGAGTATTT
GGGGGTGGGGGAGGTGGAGGAAGGGGAGCAGA back to top
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