jgi.p|Nanoce1779_2|590199, mRNA_5749 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|590199
Unique NamemRNA_5749
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1349
Alignment locationscaffold_11:484574..485922 -

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Properties
Property NameValue
TranscriptId590285
TrackFilteredModels2
ProteinId590199
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:484574..485922 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590199gene_5749Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590199mRNA_5749-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5749CDS_5749Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5749 ID=mRNA_5749|Name=jgi.p|Nanoce1779_2|590199|organism=Nannochloropsis oceanica|type=mRNA|length=1349bp
GGCGGCGTTGTGGAAGGCGAGGGCATGGGAGGAAGTTAAGGCGGAGGTGC
GGGAGTTGGAGGAATTGCGACGATATGATGATGCCAGCAGCGGCAGCAAC
ACCTTCACTATCAGTCGCGTGGATGGATGGGCACAAACGAATAGTAATGA
TAGGGAGGACGGTGATGAGGGAGATGTCGCATCGTCGTCGTGGGCATTGC
AACAGCATCAACAGCAGTTAATCTGGCAGCATGAGAAGGAAGTTGCGCAG
TGGCAGGCGAGGGTGACGGGCCTCGAGGATGACTTGCAGCAACAGCGTCG
ATCGATTCAAGATATTATAGAGGGAGCGCGCGTGAAGCAAGAGAAGCATC
AGCAGGCGTTGGAAAAAATTGAAACAGCGTATGAGAAAGAGAAGGAACGA
GCGACTGCTGCTGTAGCTGCTGCTGCTGGACTTGTACAGGCCAGGGTGCG
GCGGGAGGAAGAGCAAGATGAAGGGCAGGAGGCCCGGGCGACAAAAAGAG
CTGTGGTGATGGAGGAGGCGCTGAGTGCGGCAAAGTTGGAGTGGGCACAG
GAGGAGCGACAGCGGCTGCAGCATGTTTACAGTAAGTTTGATCAGGAGAA
AGCGGTGAAGGAGCAGCGGTGGAGGGAGAAACTGCAAGAAGTTGGGGCTA
AAGTTCAATTTTTGCAGGAGACGTTCAAGAAGATGAGTGCGAAGACAAAG
GAGAAGGAGAAGGAAAACATGCAGGTGGCTCAGGATCTGTTGGATAAGGA
ATCAAGGGAGGAGGAATTGAGGGCGCGTTTAGAGAGGGTGGAAAGGGAGG
TGCTGTTGAAAGATGTGAAGGTACGAGAATTGGCGGAGACCCTGCGGAGG
CAACAGAAGGAGACTATGGCGAGAGCGATGGCTGCGAGTCAGGCTACGGC
GGCAGATATGGAGAAGGTGAAGAAGCAGTTAAGCGTAGAGCATGAAAAGG
AGATTACTGTAGTGTTGACGAGTGTTCGAAAGCACTTACGGGAAAAGTAT
AAAGCGAAGATGTCGGTGATGCAGCAGGCGTGGGAGGATGAGAAGCGGGC
CATTTTATCTCACCAGTATAGCGGGAGCAGCCGGAAAAAGTCAGCTGGTG
CAGCTGCTGCCTCTGTCTCTGGGGGCAGAGCCAGGCATGCCTCGTCGCGG
AAGATCCTCGCAATTAAAGAAGAAAAAGAGAATAGGGAAGAATAACTAAA
AAGTAACGATGCATATTTTCCACTCAAAAAAAAGAAAGAAAAACATGGAG
AGAGAGAGGGAGAGAGAAAGACAGAGAGAGAGAGATGTGTGTACATTAAT
ATGATAACAACCACTTAAGCAAGTGGAACGACGAACGATACGAATCATC
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protein sequence of jgi.p|Nanoce1779_2|590199

>mRNA_5749-protein ID=mRNA_5749-protein|Name=jgi.p|Nanoce1779_2|590199|organism=Nannochloropsis oceanica|type=polypeptide|length=229bp
MEEALSAAKLEWAQEERQRLQHVYSKFDQEKAVKEQRWREKLQEVGAKVQ
FLQETFKKMSAKTKEKEKENMQVAQDLLDKESREEELRARLERVEREVLL
KDVKVRELAETLRRQQKETMARAMAASQATAADMEKVKKQLSVEHEKEIT
VVLTSVRKHLREKYKAKMSVMQQAWEDEKRAILSHQYSGSSRKKSAGAAA
ASVSGGRARHASSRKILAIKEEKENREE*
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mRNA from alignment at scaffold_11:484574..485922-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5749 ID=mRNA_5749|Name=jgi.p|Nanoce1779_2|590199|organism=Nannochloropsis oceanica|type=mRNA|length=1349bp|location=Sequence derived from alignment at scaffold_11:484574..485922- (Nannochloropsis oceanica)
GGCGGCGTTGTGGAAGGCGAGGGCATGGGAGGAAGTTAAGGCGGAGGTGC
GGGAGTTGGAGGAATTGCGACGATATGATGATGCCAGCAGCGGCAGCAAC
ACCTTCACTATCAGTCGCGTGGATGGATGGGCACAAACGAATAGTAATGA
TAGGGAGGACGGTGATGAGGGAGATGTCGCATCGTCGTCGTGGGCATTGC
AACAGCATCAACAGCAGTTAATCTGGCAGCATGAGAAGGAAGTTGCGCAG
TGGCAGGCGAGGGTGACGGGCCTCGAGGATGACTTGCAGCAACAGCGTCG
ATCGATTCAAGATATTATAGAGGGAGCGCGCGTGAAGCAAGAGAAGCATC
AGCAGGCGTTGGAAAAAATTGAAACAGCGTATGAGAAAGAGAAGGAACGA
GCGACTGCTGCTGTAGCTGCTGCTGCTGGACTTGTACAGGCCAGGGTGCG
GCGGGAGGAAGAGCAAGATGAAGGGCAGGAGGCCCGGGCGACAAAAAGAG
CTGTGGTGATGGAGGAGGCGCTGAGTGCGGCAAAGTTGGAGTGGGCACAG
GAGGAGCGACAGCGGCTGCAGCATGTTTACAGTAAGTTTGATCAGGAGAA
AGCGGTGAAGGAGCAGCGGTGGAGGGAGAAACTGCAAGAAGTTGGGGCTA
AAGTTCAATTTTTGCAGGAGACGTTCAAGAAGATGAGTGCGAAGACAAAG
GAGAAGGAGAAGGAAAACATGCAGGTGGCTCAGGATCTGTTGGATAAGGA
ATCAAGGGAGGAGGAATTGAGGGCGCGTTTAGAGAGGGTGGAAAGGGAGG
TGCTGTTGAAAGATGTGAAGGTACGAGAATTGGCGGAGACCCTGCGGAGG
CAACAGAAGGAGACTATGGCGAGAGCGATGGCTGCGAGTCAGGCTACGGC
GGCAGATATGGAGAAGGTGAAGAAGCAGTTAAGCGTAGAGCATGAAAAGG
AGATTACTGTAGTGTTGACGAGTGTTCGAAAGCACTTACGGGAAAAGTAT
AAAGCGAAGATGTCGGTGATGCAGCAGGCGTGGGAGGATGAGAAGCGGGC
CATTTTATCTCACCAGTATAGCGGGAGCAGCCGGAAAAAGTCAGCTGGTG
CAGCTGCTGCCTCTGTCTCTGGGGGCAGAGCCAGGCATGCCTCGTCGCGG
AAGATCCTCGCAATTAAAGAAGAAAAAGAGAATAGGGAAGAATAACTAAA
AAGTAACGATGCATATTTTCCACTCAAAAAAAAGAAAGAAAAACATGGAG
AGAGAGAGGGAGAGAGAAAGACAGAGAGAGAGAGATGTGTGTACATTAAT
ATGATAACAACCACTTAAGCAAGTGGAACGACGAACGATACGAATCATC
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Coding sequence (CDS) from alignment at scaffold_11:484574..485922-

>mRNA_5749 ID=mRNA_5749|Name=jgi.p|Nanoce1779_2|590199|organism=Nannochloropsis oceanica|type=CDS|length=687bp|location=Sequence derived from alignment at scaffold_11:484574..485922- (Nannochloropsis oceanica)
ATGGAGGAGGCGCTGAGTGCGGCAAAGTTGGAGTGGGCACAGGAGGAGCG
ACAGCGGCTGCAGCATGTTTACAGTAAGTTTGATCAGGAGAAAGCGGTGA
AGGAGCAGCGGTGGAGGGAGAAACTGCAAGAAGTTGGGGCTAAAGTTCAA
TTTTTGCAGGAGACGTTCAAGAAGATGAGTGCGAAGACAAAGGAGAAGGA
GAAGGAAAACATGCAGGTGGCTCAGGATCTGTTGGATAAGGAATCAAGGG
AGGAGGAATTGAGGGCGCGTTTAGAGAGGGTGGAAAGGGAGGTGCTGTTG
AAAGATGTGAAGGTACGAGAATTGGCGGAGACCCTGCGGAGGCAACAGAA
GGAGACTATGGCGAGAGCGATGGCTGCGAGTCAGGCTACGGCGGCAGATA
TGGAGAAGGTGAAGAAGCAGTTAAGCGTAGAGCATGAAAAGGAGATTACT
GTAGTGTTGACGAGTGTTCGAAAGCACTTACGGGAAAAGTATAAAGCGAA
GATGTCGGTGATGCAGCAGGCGTGGGAGGATGAGAAGCGGGCCATTTTAT
CTCACCAGTATAGCGGGAGCAGCCGGAAAAAGTCAGCTGGTGCAGCTGCT
GCCTCTGTCTCTGGGGGCAGAGCCAGGCATGCCTCGTCGCGGAAGATCCT
CGCAATTAAAGAAGAAAAAGAGAATAGGGAAGAATAA
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Synonyms
Publications