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Properties
| Property Name | Value |
|---|
| TranscriptId | 590279 |
| Track | FilteredModels2 |
| ProteinId | 590193 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_11 | supercontig | scaffold_11:478830..481312 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5747 ID=mRNA_5747|Name=jgi.p|Nanoce1779_2|590193|organism=Nannochloropsis oceanica|type=mRNA|length=2128bp
ACAGGTGGTGCATTGTCTTGCGCGGCCTGAGCAGAGCAAGCGGCGGAGAC
GAGAACTTCACGACCAAGCCCATACCTCGTGAGAGAAGGAGCAGCGCGGC
AACCCTCAGTAAGCAACCATGGTCCGCTTCTTGCACCTCATTCGCCCGGT
GCTCTGCATCGTCCCTGAGGTGGCAGCACCTGTGGATAGGAAGATTCCGT
TCCGTGAGAAGGTCCTGTGGACGGTCGTTACCCTCTTCATCTTCCTAGTC
TGTTGTCAGATTCCGATTTACGGCGTGCAGTCCGCCAAGTCCTCCGACCC
CTTCTACTGGATGCGCGTCATCTTGGCGTCTAATAGAGGCACGCTGATGG
AGCTTGGCATCTCCCCCATCGTCACTTCCGGTCTGGTCATGCAGCTCCTG
GCTGGCTCCCGCATTATTGAGGTCAACCAGTCTTTGAAGGAAGATCGTGC
CCTCTTTTCGGGCGCGCAGAAGTTGTTCGGGATTTTGATCACGATTGGTG
AGGCAGTCGCATACGTTTTTTCTGGCATGTATGGTGACTTGAACTCGCTT
GGGTGGGGAAATGCGATTTTGATCATTGCCCAGTTGTTCATTGCGGGGAT
GATTGTGATCACGCTGGATGAGTTACTGCAGAAGGGCTACGGACTTGGAA
GCGGGATTTCCCTATTTATTGCCACTAACATTTGCGAGAATATTATTTGG
AAGGCGTTCAGTCCCACGACGATCAACACGGGACGAGGAACGGAGTTCGA
GGGGGCGATTATCGCCTTGTTCCATCTGTTGATTACCCGAAGCGATAAAG
CGCGTGCCTTGAAGGAAGCTTTCTATCGTCAAAACCTGCCAAATATCACC
AATCTACTCGCAACGGTTTTAGTCTTCATCATCGTCATCTACTTTCAAGG
CTGGCGTGTCGACCTCCCCGTCAAGTCCCAGCGTTATCGCGGCCAGCAAG
GCACCTACCCCATTAAGCTCTTCTACACGTCGAACATGCCTATCATCCTC
CAAACCGCCTTGGTATCCAACCTGTACTTCCTCTCACAGCTTCTCCACAA
GCGTTTCAGCGGGAACATCCTGGTGCGTCTCCTCGGTCGATGGCAGGAGG
TCGAAGGCCAGCAAGGGCAGTCCGTGCCTGTCGGTGGAATTGCTTATTAC
ATCTCCCCCCCTCATTCCATGAGTGAAATTCTGTCCGATCCCTTTCATGC
CATCTTCTACCTGGTGTTTATTTTGTCTTCGTGTGCGTTGTTTTCCAAGA
CCTGGATTGAGGTGTCCGGGTCCAGTGCGAAGGACGTGGCGAAGCAGCTC
CGCGACTCCAAGATGGTGATGAAGGGGCACCGTGACTCTGCCCTTGTGCA
TGAATTGAATCGTTACATTCCCGTGGCGGCGGCCTTCGGTGGCATGTGTA
TTGGCGCCCTGACGGTGGTGGCTGATTTCCTTGGGGCGATTGGCTCGGGG
ACCGGCATCTTGCTGGCTGTGACGATTATTTACCAGTACTACGAGATGTT
TGTCTCGCAGACGGCCAACCCGGATGCTGGGTTTTAAGATGAAAGTGCAG
AGAGAGAAGCAGGAGGTTAGAGAGGCTGGGGGTAGGCATAAAAGAGAGGA
AGGAGAAAGAGGTGTGGTGAGCCAAGCTTCCTTAAGGAGAGGGAATGCGT
CGTGAGAGAAAGGGCAAGGGGAGGAGATGAGTGAACGGCGGCAGAAAGAA
GGGGAGAGATAGAGAACAGAAAACATGGATGGAGAAATGAAATGTTACTT
GCTTTCAATCGAAAGTGAAGGAGAGAAGAGAATGACGGATTGGTTGGGAG
AGATTTTGTGTGCGTGTGGCTGATGATGAGAGGCATGCAGCTAAGTTGAC
CCTTGAGAGACCTCATGCTGAGGAAAGGGAAGGAGGGAGGGGAAAAGGAT
AGAGACTGGATAATAGGGAAAAGGCTGCCAGGAAGCTGTTGTAGACGGAC
CGGTTTTCTTGGGCAGGCACTAACCATCAGACATCAGAACGAACGGGTGA
AAGAAATATTAACTCAACCAAAAAAATAAGTGGAGAAGCGGTCAAGAGCA
CAAAAGCAAGACAAACTGACTTCCAAAAACGCGTTTGAAAAACGGAGAGG
AAGAAAAGGACGAGATCTCAAGTTTTAA back to topprotein sequence of jgi.p|Nanoce1779_2|590193 >mRNA_5747-protein ID=mRNA_5747-protein|Name=jgi.p|Nanoce1779_2|590193|organism=Nannochloropsis oceanica|type=polypeptide|length=473bp
MVRFLHLIRPVLCIVPEVAAPVDRKIPFREKVLWTVVTLFIFLVCCQIPI
YGVQSAKSSDPFYWMRVILASNRGTLMELGISPIVTSGLVMQLLAGSRII
EVNQSLKEDRALFSGAQKLFGILITIGEAVAYVFSGMYGDLNSLGWGNAI
LIIAQLFIAGMIVITLDELLQKGYGLGSGISLFIATNICENIIWKAFSPT
TINTGRGTEFEGAIIALFHLLITRSDKARALKEAFYRQNLPNITNLLATV
LVFIIVIYFQGWRVDLPVKSQRYRGQQGTYPIKLFYTSNMPIILQTALVS
NLYFLSQLLHKRFSGNILVRLLGRWQEVEGQQGQSVPVGGIAYYISPPHS
MSEILSDPFHAIFYLVFILSSCALFSKTWIEVSGSSAKDVAKQLRDSKMV
MKGHRDSALVHELNRYIPVAAAFGGMCIGALTVVADFLGAIGSGTGILLA
VTIIYQYYEMFVSQTANPDAGF* back to topmRNA from alignment at scaffold_11:478830..481312- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5747 ID=mRNA_5747|Name=jgi.p|Nanoce1779_2|590193|organism=Nannochloropsis oceanica|type=mRNA|length=2483bp|location=Sequence derived from alignment at scaffold_11:478830..481312- (Nannochloropsis oceanica)
ACAGGTGGTGCATTGTCTTGCGCGGCCTGAGCAGAGCAAGCGGCGGAGAC
GAGAACTTCACGACCAAGCCCATACCTCGTGAGAGAAGGAGCAGCGCGGC
AACCCTCAGTAAGCAACCATGGTCCGCTTCTTGCACCTCATTCGCCCGGT
GCTCTGCATCGTCCCTGAGGTGGCAGCACCTGTGGATAGGAAGATTCCGT
TCCGTGAGAAGGTCCTGTGGACGGTCGTTACCCTCTTCATCTTCCTAGTC
TGTTGTCAGATTCCGATTTACGGCGTGCAGTCCGCCAAGTCCTCCGACCC
CTTCTACTGGATGCGCGTCATCTTGGCGTCTAATAGGTAAGTTTTCGTGC
GAGGTACAGTACCAGTTGTGATATGTGTGGGTTGACATGCTGGCAGATCG
GTGGGCATGATTGGTGGGCTTAATTTCACCAAATTTCTGCTTAGCCCGAC
TCTATTCTTTCACGTCGTCACTGGCCTGTGGCACAATTTTTTCTCATTTG
TCATATGTTCTGCAGGGGTGTAAGTGCGGGTTACCGTGCACTACTGCTGG
GCATTGCATTCAGATTTCTTTTTCAGCCTGCCCCTTATGGATGGGGATGA
TGACCCCTCGCTCTGTACCGCACCACTTCATCACACACGCCCTTACTCCT
GCCTACCTTCCTCCCTCCCTGTCCCTTTTCTTCCAAAATAGAGGCACGCT
GATGGAGCTTGGCATCTCCCCCATCGTCACTTCCGGTCTGGTCATGCAGC
TCCTGGCTGGCTCCCGCATTATTGAGGTCAACCAGTCTTTGAAGGAAGAT
CGTGCCCTCTTTTCGGGCGCGCAGAAGTTGTTCGGGATTTTGATCACGAT
TGGTGAGGCAGTCGCATACGTTTTTTCTGGCATGTATGGTGACTTGAACT
CGCTTGGGTGGGGAAATGCGATTTTGATCATTGCCCAGTTGTTCATTGCG
GGGATGATTGTGATCACGCTGGATGAGTTACTGCAGAAGGGCTACGGACT
TGGAAGCGGGATTTCCCTATTTATTGCCACTAACATTTGCGAGAATATTA
TTTGGAAGGCGTTCAGTCCCACGACGATCAACACGGGACGAGGAACGGAG
TTCGAGGGGGCGATTATCGCCTTGTTCCATCTGTTGATTACCCGAAGCGA
TAAAGCGCGTGCCTTGAAGGAAGCTTTCTATCGTCAAAACCTGCCAAATA
TCACCAATCTACTCGCAACGGTTTTAGTCTTCATCATCGTCATCTACTTT
CAAGGCTGGCGTGTCGACCTCCCCGTCAAGTCCCAGCGTTATCGCGGCCA
GCAAGGCACCTACCCCATTAAGCTCTTCTACACGTCGAACATGCCTATCA
TCCTCCAAACCGCCTTGGTATCCAACCTGTACTTCCTCTCACAGCTTCTC
CACAAGCGTTTCAGCGGGAACATCCTGGTGCGTCTCCTCGGTCGATGGCA
GGAGGTCGAAGGCCAGCAAGGGCAGTCCGTGCCTGTCGGTGGAATTGCTT
ATTACATCTCCCCCCCTCATTCCATGAGTGAAATTCTGTCCGATCCCTTT
CATGCCATCTTCTACCTGGTGTTTATTTTGTCTTCGTGTGCGTTGTTTTC
CAAGACCTGGATTGAGGTGTCCGGGTCCAGTGCGAAGGACGTGGCGAAGC
AGCTCCGCGACTCCAAGATGGTGATGAAGGGGCACCGTGACTCTGCCCTT
GTGCATGAATTGAATCGTTACATTCCCGTGGCGGCGGCCTTCGGTGGCAT
GTGTATTGGCGCCCTGACGGTGGTGGCTGATTTCCTTGGGGCGATTGGCT
CGGGGACCGGCATCTTGCTGGCTGTGACGATTATTTACCAGTACTACGAG
ATGTTTGTCTCGCAGACGGCCAACCCGGATGCTGGGTTTTAAGATGAAAG
TGCAGAGAGAGAAGCAGGAGGTTAGAGAGGCTGGGGGTAGGCATAAAAGA
GAGGAAGGAGAAAGAGGTGTGGTGAGCCAAGCTTCCTTAAGGAGAGGGAA
TGCGTCGTGAGAGAAAGGGCAAGGGGAGGAGATGAGTGAACGGCGGCAGA
AAGAAGGGGAGAGATAGAGAACAGAAAACATGGATGGAGAAATGAAATGT
TACTTGCTTTCAATCGAAAGTGAAGGAGAGAAGAGAATGACGGATTGGTT
GGGAGAGATTTTGTGTGCGTGTGGCTGATGATGAGAGGCATGCAGCTAAG
TTGACCCTTGAGAGACCTCATGCTGAGGAAAGGGAAGGAGGGAGGGGAAA
AGGATAGAGACTGGATAATAGGGAAAAGGCTGCCAGGAAGCTGTTGTAGA
CGGACCGGTTTTCTTGGGCAGGCACTAACCATCAGACATCAGAACGAACG
GGTGAAAGAAATATTAACTCAACCAAAAAAATAAGTGGAGAAGCGGTCAA
GAGCACAAAAGCAAGACAAACTGACTTCCAAAAACGCGTTTGAAAAACGG
AGAGGAAGAAAAGGACGAGATCTCAAGTTTTAA back to topCoding sequence (CDS) from alignment at scaffold_11:478830..481312- >mRNA_5747 ID=mRNA_5747|Name=jgi.p|Nanoce1779_2|590193|organism=Nannochloropsis oceanica|type=CDS|length=2838bp|location=Sequence derived from alignment at scaffold_11:478830..481312- (Nannochloropsis oceanica)
AGGCACGCTGATGGAGCTTGGCATCTCCCCCATCGTCACTTCCGGTCTGG
TCATGCAGCTCCTGGCTGGCTCCCGCATTATTGAGGTCAACCAGTCTTTG
AAGGAAGATCGTGCCCTCTTTTCGGGCGCGCAGAAGTTGTTCGGGATTTT
GATCACGATTGGTGAGGCAGTCGCATACGTTTTTTCTGGCATGTATGGTG
ACTTGAACTCGCTTGGGTGGGGAAATGCGATTTTGATCATTGCCCAGTTG
TTCATTGCGGGGATGATTGTGATCACGCTGGATGAGTTACTGCAGAAGGG
CTACGGACTTGGAAGCGGGATTTCCCTATTTATTGCCACTAACATTTGCG
AGAATATTATTTGGAAGGCGTTCAGTCCCACGACGATCAACACGGGACGA
GGAACGGAGTTCGAGGGGGCGATTATCGCCTTGTTCCATCTGTTGATTAC
CCGAAGCGATAAAGCGCGTGCCTTGAAGGAAGCTTTCTATCGTCAAAACC
TGCCAAATATCACCAATCTACTCGCAACGGTTTTAGTCTTCATCATCGTC
ATCTACTTTCAAGGCTGGCGTGTCGACCTCCCCGTCAAGTCCCAGCGTTA
TCGCGGCCAGCAAGGCACCTACCCCATTAAGCTCTTCTACACGTCGAACA
TGCCTATCATCCTCCAAACCGCCTTGGTATCCAACCTGTACTTCCTCTCA
CAGCTTCTCCACAAGCGTTTCAGCGGGAACATCCTGGTGCGTCTCCTCGG
TCGATGGCAGGAGGTCGAAGGCCAGCAAGGGCAGTCCGTGCCTGTCGGTG
GAATTGCTTATTACATCTCCCCCCCTCATTCCATGAGTGAAATTCTGTCC
GATCCCTTTCATGCCATCTTCTACCTGGTGTTTATTTTGTCTTCGTGTGC
GTTGTTTTCCAAGACCTGGATTGAGGTGTCCGGGTCCAGTGCGAAGGACG
TGGCGAAGCAGCTCCGCGACTCCAAGATGGTGATGAAGGGGCACCGTGAC
TCTGCCCTTGTGCATGAATTGAATCGTTACATTCCCGTGGCGGCGGCCTT
CGGTGGCATGTGTATTGGCGCCCTGACGGTGGTGGCTGATTTCCTTGGGG
CGATTGGCTCGGGGACCGGCATCTTGCTGGCTGTGACGATTATTTACCAG
TACTACGAGATGTTTGTCTCGCAGACGGCCAACCCGGATGCTGGGTTTTA
AATGGTCCGCTTCTTGCACCTCATTCGCCCGGTGCTCTGCATCGTCCCTG
AGGTGGCAGCACCTGTGGATAGGAAGATTCCGTTCCGTGAGAAGGTCCTG
TGGACGGTCGTTACCCTCTTCATCTTCCTAGTCTGTTGTCAGATTCCGAT
TTACGGCGTGCAGTCCGCCAAGTCCTCCGACCCCTTCTACTGGATGCGCG
TCATCTTGGCGTCTAATAGAGGCACGCTGATGGAGCTTGGCATCTCCCCC
ATCGTCACTTCCGGTCTGGTCATGCAGCTCCTGGCTGGCTCCCGCATTAT
TGAGGTCAACCAGTCTTTGAAGGAAGATCGTGCCCTCTTTTCGGGCGCGC
AGAAGTTGTTCGGGATTTTGATCACGATTGGTGAGGCAGTCGCATACGTT
TTTTCTGGCATGTATGGTGACTTGAACTCGCTTGGGTGGGGAAATGCGAT
TTTGATCATTGCCCAGTTGTTCATTGCGGGGATGATTGTGATCACGCTGG
ATGAGTTACTGCAGAAGGGCTACGGACTTGGAAGCGGGATTTCCCTATTT
ATTGCCACTAACATTTGCGAGAATATTATTTGGAAGGCGTTCAGTCCCAC
GACGATCAACACGGGACGAGGAACGGAGTTCGAGGGGGCGATTATCGCCT
TGTTCCATCTGTTGATTACCCGAAGCGATAAAGCGCGTGCCTTGAAGGAA
GCTTTCTATCGTCAAAACCTGCCAAATATCACCAATCTACTCGCAACGGT
TTTAGTCTTCATCATCGTCATCTACTTTCAAGGCTGGCGTGTCGACCTCC
CCGTCAAGTCCCAGCGTTATCGCGGCCAGCAAGGCACCTACCCCATTAAG
CTCTTCTACACGTCGAACATGCCTATCATCCTCCAAACCGCCTTGGTATC
CAACCTGTACTTCCTCTCACAGCTTCTCCACAAGCGTTTCAGCGGGAACA
TCCTGGTGCGTCTCCTCGGTCGATGGCAGGAGGTCGAAGGCCAGCAAGGG
CAGTCCGTGCCTGTCGGTGGAATTGCTTATTACATCTCCCCCCCTCATTC
CATGAGTGAAATTCTGTCCGATCCCTTTCATGCCATCTTCTACCTGGTGT
TTATTTTGTCTTCGTGTGCGTTGTTTTCCAAGACCTGGATTGAGGTGTCC
GGGTCCAGTGCGAAGGACGTGGCGAAGCAGCTCCGCGACTCCAAGATGGT
GATGAAGGGGCACCGTGACTCTGCCCTTGTGCATGAATTGAATCGTTACA
TTCCCGTGGCGGCGGCCTTCGGTGGCATGTGTATTGGCGCCCTGACGGTG
GTGGCTGATTTCCTTGGGGCGATTGGCTCGGGGACCGGCATCTTGCTGGC
TGTGACGATTATTTACCAGTACTACGAGATGTTTGTCTCGCAGACGGCCA
ACCCGGATGCTGGGTTTTAAATGGTCCGCTTCTTGCACCTCATTCGCCCG
GTGCTCTGCATCGTCCCTGAGGTGGCAGCACCTGTGGATAGGAAGATTCC
GTTCCGTGAGAAGGTCCTGTGGACGGTCGTTACCCTCTTCATCTTCCTAG
TCTGTTGTCAGATTCCGATTTACGGCGTGCAGTCCGCCAAGTCCTCCGAC
CCCTTCTACTGGATGCGCGTCATCTTGGCGTCTAATAG back to top
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