jgi.p|Nanoce1779_2|36464, mRNA_5744 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|36464
Unique Name	mRNA_5744
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2896
Alignment location	scaffold_11:468582..471477 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	36550
Track	FilteredModels2
ProteinId	36464

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_11	supercontig	scaffold_11:468582..471477 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|36464	gene_5744	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|36464	mRNA_5744-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5744	CDS_5744	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_11:468582..471477-
coding sequence from alignment at scaffold_11:468582..471477-

mRNA sequence

>mRNA_5744 ID=mRNA_5744|Name=jgi.p|Nanoce1779_2|36464|organism=Nannochloropsis oceanica|type=mRNA|length=2896bp
GTTTGTATTCCTTACATGTAAGGCTCGGTCCACTCGTCAGCTCAGCCTTG
CCCCCCTTCCATAGCTGTATCAGGTTCACGACTCAGACGAGTCCAGGGCT
CCAGAGTGAAGGAGTGCAATGCACATGCGTCTGCTGTATATAACGGCTCC
ATGTTCCAACTTGCTCTTCTTCGGGCTGGGTGGGGAGAACTTCCTAGCTT
GCTTGTGTGTGTACAAATCTAAGCTGTGCATCTCTAACTTAACGAAGAAC
ACCAAAATTACAGCCCATACTTATTGCAGGCCAGGCCAGGCAGGCCCTTG
GCCACCAAGACGGTCACTCCGTTCGCCCGAGCCGAGAAAAGAGGAGCGCG
GCGACATGAGAGGAGGCAGTGTGGGTGGTGGCCCTGGTGGGCCTAACCAC
ATCAACCGGCGCATATCGTCCTCGATCCGACTGTCCACTTTCTTTGGCGT
CGTATTCCTGGTAGAACTTCTGCTGTTAGTCTACATTAAGTACTCCTCCC
TGCCCCCTCCCACTCCCGACACGGGCCACATGCTGGCCCTCGGCTCCTTT
GCGTCCGGGTCGGCGGCTGCGGATAGCGTGTCAAGCACTCAAGATGTCAG
TAATACAAGCACCAGCACTGTACCCTACGTGCCACCCCGCTTGGCCCGGC
CCTTGACCGTGGCTTGCTTATCATCCCAGCGCACTGTCTCTACCACAGCC
TTCAACCTGGTCCGTGTGCTTATGGAGCGGGTGGACCCCAATTCAATCAG
TGGCTGGGAGCACGATGTGATTGGCTCAAAACCTGGTGAACGCATACAAG
GCGTCCTGCCCAAGGTGCATGGAAAAGTCAGCATGGTCTACAAATCCCAC
GCGGGCGGCGCCGAGCACCACAAGCACGCAGACTTCTTTGTCGTCACCTA
TCGGGACCCTTATGAGGTTATTTGCAGCATGGGTCGAATGTTTTTGCCTA
AGATTTTTAGAGATAATCAAAAGGCTGTGGGAAAATGTAGAAAGATGGCC
GAAAACGAGGCAGGGATTAGATATTGGGCTGGCGGGAGGGAGGGGGAGAA
GCCGCAGGCGCAGGCGCAGACGCAGGCAGTGCACATCAATTCTGAAGCTT
TGAAAAGCATGGAGGGGATGGTGGAGGTTGTAAAGCTGCTGATGGATAAG
TGGGGGGTGGTCGGGGGGGATTTGGACCCACGGAGTGTAGCGATGGAGGT
GCTTGAGTTGGAGTCACCGCCGGAGGGGGTTTTTGCGGTGGCAAACCCGA
GGAGTGAGTTACATCCACACCATATCACTGAAGGAGAGGCGGAGGGCGGG
GGGGGCTGTGGAGTGCTCAAAAGTGTGTTGGAGGAGGATGAAATATGTAG
AGCTTGGCATGATAGCTTTGAGGCTATGTTTCCACTAGGGAGCTCGGCTA
TCTTTGATGAGAGGTCGCCGAGGGCGGGGTTGCAAGGAGCGAGGAAACCG
CGGGTTGTGGCAGAGAACGAAAAAGGTTTGAGGCGAGCGCGTGGGGGTGG
TAATAAGGATAGCAAAAAGAATAGTGGCAAGGGAGGAAGCAGCAGCAGTA
GCAGTGGCCGTGATGCGGTGGGCGGCCGCAAAAGAAGCAGCAGCGGCAAG
GGCAGCAGCAGCCTCAATAACAACAGCCGAAAGGAGGCCGTCACGAATGC
TGATCATCCTCCCACGTCATCATCCAGAAGTTCGAACGAGAAATACTTCT
ACTGCTTGCTCAATGGCGGCTTCAACGACATAACCGTCGAGATGTGGAAA
TGCATCCAGTTCGCCCTCGACACGGACAGGACACTCATCCTGGGTTATGA
GAATTACAACCCCGTCTCTCCCCCGTGGACCCCCTACTTCACCCTCAACC
AAGAGGGACTACCCAACCTCCGGATTATCACACCCTTCCAAGCTGCCACT
GCCCTAAATGAACGAAACCGTCGGGTGAGCGTCTTCCCTTCCCGTCTCAC
CAATGACCTCGACCCTCTCCTCGGTCCCCGTCCCTCGCACGGACACGCGC
CCGAAGGCTTGGATCCTCTCCAGCCTTTTCCCTTTATATATTCTGAGTTA
AAACATCTCAAATTTAGATTTGATGGGGAGTATGATGAAGATGTTGTCGT
TTTCCATCGCCAGGGCAACGTCGGCTCCGGGCTGGATCTCTTGAGGAACA
TGCGTTTCTCCTTGGAAATTCGCCGAACTTTCTTGGAGCGATGGAGCAAG
CTATCCAAGCCCTATATAGCGCTACATTTAAGACGGACGGACAAGAGCTG
CAGTGATATGAAATTGGAAAAGATTCTCAAGGCATTGCACCGGCTGGGGA
AGTCGGGTTTGGTCCCCGAAGGCCCTGTCTACGTAGCAAGTGACCATCCA
GAACTACCAGACAACTTTCGAGAGGAGCTCGAAAAGACGCAGGCGAGAGA
GGTTGTGTCTTTCACATATCATCCGCCCATACATGAGCAACGGAACGCCA
AGAAGGAGGATCCATACCTACAACGACAAAAGGAGCATGAGCGGCACAGC
CTGGGGTTGGAAGGTCTGCATTTACATGATGACTTGAGCCCCGAGGAAAA
GCACCAGACGAACCTTGATGCGTTTGTAGACTTACTGCTTTTGGCTATGG
CGCAAGAGCTGGTGACCTCGTGTGGGGGCTACAGTCACTTGGCCAGAGAG
CTGCACGAAGACCCGGCTGTAGTGCTCTCGCTCTTAAGTTTGCCAAAGCC
GAGACCAGGAGAGAATATGGATGCCCTTTTGGAAGCTGCTGCTGCTGTGG
AGGGGGGAGTACAATTAGAGATGATGAGTAAAACGTAGAATAAGGAAGAA
GAGACGGAAGAGGGGAGGTTGGGATTGAGACTTTAGTGACGGGATGTAGA
TAACGTTTTTTTTTTTAGACCGACCAATTCTGTTTGTCATCTGTAG

protein sequence of jgi.p|Nanoce1779_2|36464

>mRNA_5744-protein ID=mRNA_5744-protein|Name=jgi.p|Nanoce1779_2|36464|organism=Nannochloropsis oceanica|type=polypeptide|length=890bp
MHMRLLYITAPCSNLLFFGLGGENFLACLCVYKSKLCISNLTKNTKITAH
TYCRPGQAGPWPPRRSLRSPEPRKEERGDMRGGSVGGGPGGPNHINRRIS
SSIRLSTFFGVVFLVELLLLVYIKYSSLPPPTPDTGHMLALGSFASGSAA
ADSVSSTQDVSNTSTSTVPYVPPRLARPLTVACLSSQRTVSTTAFNLVRV
LMERVDPNSISGWEHDVIGSKPGERIQGVLPKVHGKVSMVYKSHAGGAEH
HKHADFFVVTYRDPYEVICSMGRMFLPKIFRDNQKAVGKCRKMAENEAGI
RYWAGGREGEKPQAQAQTQAVHINSEALKSMEGMVEVVKLLMDKWGVVGG
DLDPRSVAMEVLELESPPEGVFAVANPRSELHPHHITEGEAEGGGGCGVL
KSVLEEDEICRAWHDSFEAMFPLGSSAIFDERSPRAGLQGARKPRVVAEN
EKGLRRARGGGNKDSKKNSGKGGSSSSSSGRDAVGGRKRSSSGKGSSSLN
NNSRKEAVTNADHPPTSSSRSSNEKYFYCLLNGGFNDITVEMWKCIQFAL
DTDRTLILGYENYNPVSPPWTPYFTLNQEGLPNLRIITPFQAATALNERN
RRVSVFPSRLTNDLDPLLGPRPSHGHAPEGLDPLQPFPFIYSELKHLKFR
FDGEYDEDVVVFHRQGNVGSGLDLLRNMRFSLEIRRTFLERWSKLSKPYI
ALHLRRTDKSCSDMKLEKILKALHRLGKSGLVPEGPVYVASDHPELPDNF
REELEKTQAREVVSFTYHPPIHEQRNAKKEDPYLQRQKEHERHSLGLEGL
HLHDDLSPEEKHQTNLDAFVDLLLLAMAQELVTSCGGYSHLARELHEDPA
VVLSLLSLPKPRPGENMDALLEAAAAVEGGVQLEMMSKT*

mRNA from alignment at scaffold_11:468582..471477-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5744 ID=mRNA_5744|Name=jgi.p|Nanoce1779_2|36464|organism=Nannochloropsis oceanica|type=mRNA|length=2896bp|location=Sequence derived from alignment at scaffold_11:468582..471477- (Nannochloropsis oceanica)
GTTTGTATTCCTTACATGTAAGGCTCGGTCCACTCGTCAGCTCAGCCTTG
CCCCCCTTCCATAGCTGTATCAGGTTCACGACTCAGACGAGTCCAGGGCT
CCAGAGTGAAGGAGTGCAATGCACATGCGTCTGCTGTATATAACGGCTCC
ATGTTCCAACTTGCTCTTCTTCGGGCTGGGTGGGGAGAACTTCCTAGCTT
GCTTGTGTGTGTACAAATCTAAGCTGTGCATCTCTAACTTAACGAAGAAC
ACCAAAATTACAGCCCATACTTATTGCAGGCCAGGCCAGGCAGGCCCTTG
GCCACCAAGACGGTCACTCCGTTCGCCCGAGCCGAGAAAAGAGGAGCGCG
GCGACATGAGAGGAGGCAGTGTGGGTGGTGGCCCTGGTGGGCCTAACCAC
ATCAACCGGCGCATATCGTCCTCGATCCGACTGTCCACTTTCTTTGGCGT
CGTATTCCTGGTAGAACTTCTGCTGTTAGTCTACATTAAGTACTCCTCCC
TGCCCCCTCCCACTCCCGACACGGGCCACATGCTGGCCCTCGGCTCCTTT
GCGTCCGGGTCGGCGGCTGCGGATAGCGTGTCAAGCACTCAAGATGTCAG
TAATACAAGCACCAGCACTGTACCCTACGTGCCACCCCGCTTGGCCCGGC
CCTTGACCGTGGCTTGCTTATCATCCCAGCGCACTGTCTCTACCACAGCC
TTCAACCTGGTCCGTGTGCTTATGGAGCGGGTGGACCCCAATTCAATCAG
TGGCTGGGAGCACGATGTGATTGGCTCAAAACCTGGTGAACGCATACAAG
GCGTCCTGCCCAAGGTGCATGGAAAAGTCAGCATGGTCTACAAATCCCAC
GCGGGCGGCGCCGAGCACCACAAGCACGCAGACTTCTTTGTCGTCACCTA
TCGGGACCCTTATGAGGTTATTTGCAGCATGGGTCGAATGTTTTTGCCTA
AGATTTTTAGAGATAATCAAAAGGCTGTGGGAAAATGTAGAAAGATGGCC
GAAAACGAGGCAGGGATTAGATATTGGGCTGGCGGGAGGGAGGGGGAGAA
GCCGCAGGCGCAGGCGCAGACGCAGGCAGTGCACATCAATTCTGAAGCTT
TGAAAAGCATGGAGGGGATGGTGGAGGTTGTAAAGCTGCTGATGGATAAG
TGGGGGGTGGTCGGGGGGGATTTGGACCCACGGAGTGTAGCGATGGAGGT
GCTTGAGTTGGAGTCACCGCCGGAGGGGGTTTTTGCGGTGGCAAACCCGA
GGAGTGAGTTACATCCACACCATATCACTGAAGGAGAGGCGGAGGGCGGG
GGGGGCTGTGGAGTGCTCAAAAGTGTGTTGGAGGAGGATGAAATATGTAG
AGCTTGGCATGATAGCTTTGAGGCTATGTTTCCACTAGGGAGCTCGGCTA
TCTTTGATGAGAGGTCGCCGAGGGCGGGGTTGCAAGGAGCGAGGAAACCG
CGGGTTGTGGCAGAGAACGAAAAAGGTTTGAGGCGAGCGCGTGGGGGTGG
TAATAAGGATAGCAAAAAGAATAGTGGCAAGGGAGGAAGCAGCAGCAGTA
GCAGTGGCCGTGATGCGGTGGGCGGCCGCAAAAGAAGCAGCAGCGGCAAG
GGCAGCAGCAGCCTCAATAACAACAGCCGAAAGGAGGCCGTCACGAATGC
TGATCATCCTCCCACGTCATCATCCAGAAGTTCGAACGAGAAATACTTCT
ACTGCTTGCTCAATGGCGGCTTCAACGACATAACCGTCGAGATGTGGAAA
TGCATCCAGTTCGCCCTCGACACGGACAGGACACTCATCCTGGGTTATGA
GAATTACAACCCCGTCTCTCCCCCGTGGACCCCCTACTTCACCCTCAACC
AAGAGGGACTACCCAACCTCCGGATTATCACACCCTTCCAAGCTGCCACT
GCCCTAAATGAACGAAACCGTCGGGTGAGCGTCTTCCCTTCCCGTCTCAC
CAATGACCTCGACCCTCTCCTCGGTCCCCGTCCCTCGCACGGACACGCGC
CCGAAGGCTTGGATCCTCTCCAGCCTTTTCCCTTTATATATTCTGAGTTA
AAACATCTCAAATTTAGATTTGATGGGGAGTATGATGAAGATGTTGTCGT
TTTCCATCGCCAGGGCAACGTCGGCTCCGGGCTGGATCTCTTGAGGAACA
TGCGTTTCTCCTTGGAAATTCGCCGAACTTTCTTGGAGCGATGGAGCAAG
CTATCCAAGCCCTATATAGCGCTACATTTAAGACGGACGGACAAGAGCTG
CAGTGATATGAAATTGGAAAAGATTCTCAAGGCATTGCACCGGCTGGGGA
AGTCGGGTTTGGTCCCCGAAGGCCCTGTCTACGTAGCAAGTGACCATCCA
GAACTACCAGACAACTTTCGAGAGGAGCTCGAAAAGACGCAGGCGAGAGA
GGTTGTGTCTTTCACATATCATCCGCCCATACATGAGCAACGGAACGCCA
AGAAGGAGGATCCATACCTACAACGACAAAAGGAGCATGAGCGGCACAGC
CTGGGGTTGGAAGGTCTGCATTTACATGATGACTTGAGCCCCGAGGAAAA
GCACCAGACGAACCTTGATGCGTTTGTAGACTTACTGCTTTTGGCTATGG
CGCAAGAGCTGGTGACCTCGTGTGGGGGCTACAGTCACTTGGCCAGAGAG
CTGCACGAAGACCCGGCTGTAGTGCTCTCGCTCTTAAGTTTGCCAAAGCC
GAGACCAGGAGAGAATATGGATGCCCTTTTGGAAGCTGCTGCTGCTGTGG
AGGGGGGAGTACAATTAGAGATGATGAGTAAAACGTAGAATAAGGAAGAA
GAGACGGAAGAGGGGAGGTTGGGATTGAGACTTTAGTGACGGGATGTAGA
TAACGTTTTTTTTTTTAGACCGACCAATTCTGTTTGTCATCTGTAG

Coding sequence (CDS) from alignment at scaffold_11:468582..471477-

>mRNA_5744 ID=mRNA_5744|Name=jgi.p|Nanoce1779_2|36464|organism=Nannochloropsis oceanica|type=CDS|length=2670bp|location=Sequence derived from alignment at scaffold_11:468582..471477- (Nannochloropsis oceanica)
ATGCACATGCGTCTGCTGTATATAACGGCTCCATGTTCCAACTTGCTCTT
CTTCGGGCTGGGTGGGGAGAACTTCCTAGCTTGCTTGTGTGTGTACAAAT
CTAAGCTGTGCATCTCTAACTTAACGAAGAACACCAAAATTACAGCCCAT
ACTTATTGCAGGCCAGGCCAGGCAGGCCCTTGGCCACCAAGACGGTCACT
CCGTTCGCCCGAGCCGAGAAAAGAGGAGCGCGGCGACATGAGAGGAGGCA
GTGTGGGTGGTGGCCCTGGTGGGCCTAACCACATCAACCGGCGCATATCG
TCCTCGATCCGACTGTCCACTTTCTTTGGCGTCGTATTCCTGGTAGAACT
TCTGCTGTTAGTCTACATTAAGTACTCCTCCCTGCCCCCTCCCACTCCCG
ACACGGGCCACATGCTGGCCCTCGGCTCCTTTGCGTCCGGGTCGGCGGCT
GCGGATAGCGTGTCAAGCACTCAAGATGTCAGTAATACAAGCACCAGCAC
TGTACCCTACGTGCCACCCCGCTTGGCCCGGCCCTTGACCGTGGCTTGCT
TATCATCCCAGCGCACTGTCTCTACCACAGCCTTCAACCTGGTCCGTGTG
CTTATGGAGCGGGTGGACCCCAATTCAATCAGTGGCTGGGAGCACGATGT
GATTGGCTCAAAACCTGGTGAACGCATACAAGGCGTCCTGCCCAAGGTGC
ATGGAAAAGTCAGCATGGTCTACAAATCCCACGCGGGCGGCGCCGAGCAC
CACAAGCACGCAGACTTCTTTGTCGTCACCTATCGGGACCCTTATGAGGT
TATTTGCAGCATGGGTCGAATGTTTTTGCCTAAGATTTTTAGAGATAATC
AAAAGGCTGTGGGAAAATGTAGAAAGATGGCCGAAAACGAGGCAGGGATT
AGATATTGGGCTGGCGGGAGGGAGGGGGAGAAGCCGCAGGCGCAGGCGCA
GACGCAGGCAGTGCACATCAATTCTGAAGCTTTGAAAAGCATGGAGGGGA
TGGTGGAGGTTGTAAAGCTGCTGATGGATAAGTGGGGGGTGGTCGGGGGG
GATTTGGACCCACGGAGTGTAGCGATGGAGGTGCTTGAGTTGGAGTCACC
GCCGGAGGGGGTTTTTGCGGTGGCAAACCCGAGGAGTGAGTTACATCCAC
ACCATATCACTGAAGGAGAGGCGGAGGGCGGGGGGGGCTGTGGAGTGCTC
AAAAGTGTGTTGGAGGAGGATGAAATATGTAGAGCTTGGCATGATAGCTT
TGAGGCTATGTTTCCACTAGGGAGCTCGGCTATCTTTGATGAGAGGTCGC
CGAGGGCGGGGTTGCAAGGAGCGAGGAAACCGCGGGTTGTGGCAGAGAAC
GAAAAAGGTTTGAGGCGAGCGCGTGGGGGTGGTAATAAGGATAGCAAAAA
GAATAGTGGCAAGGGAGGAAGCAGCAGCAGTAGCAGTGGCCGTGATGCGG
TGGGCGGCCGCAAAAGAAGCAGCAGCGGCAAGGGCAGCAGCAGCCTCAAT
AACAACAGCCGAAAGGAGGCCGTCACGAATGCTGATCATCCTCCCACGTC
ATCATCCAGAAGTTCGAACGAGAAATACTTCTACTGCTTGCTCAATGGCG
GCTTCAACGACATAACCGTCGAGATGTGGAAATGCATCCAGTTCGCCCTC
GACACGGACAGGACACTCATCCTGGGTTATGAGAATTACAACCCCGTCTC
TCCCCCGTGGACCCCCTACTTCACCCTCAACCAAGAGGGACTACCCAACC
TCCGGATTATCACACCCTTCCAAGCTGCCACTGCCCTAAATGAACGAAAC
CGTCGGGTGAGCGTCTTCCCTTCCCGTCTCACCAATGACCTCGACCCTCT
CCTCGGTCCCCGTCCCTCGCACGGACACGCGCCCGAAGGCTTGGATCCTC
TCCAGCCTTTTCCCTTTATATATTCTGAGTTAAAACATCTCAAATTTAGA
TTTGATGGGGAGTATGATGAAGATGTTGTCGTTTTCCATCGCCAGGGCAA
CGTCGGCTCCGGGCTGGATCTCTTGAGGAACATGCGTTTCTCCTTGGAAA
TTCGCCGAACTTTCTTGGAGCGATGGAGCAAGCTATCCAAGCCCTATATA
GCGCTACATTTAAGACGGACGGACAAGAGCTGCAGTGATATGAAATTGGA
AAAGATTCTCAAGGCATTGCACCGGCTGGGGAAGTCGGGTTTGGTCCCCG
AAGGCCCTGTCTACGTAGCAAGTGACCATCCAGAACTACCAGACAACTTT
CGAGAGGAGCTCGAAAAGACGCAGGCGAGAGAGGTTGTGTCTTTCACATA
TCATCCGCCCATACATGAGCAACGGAACGCCAAGAAGGAGGATCCATACC
TACAACGACAAAAGGAGCATGAGCGGCACAGCCTGGGGTTGGAAGGTCTG
CATTTACATGATGACTTGAGCCCCGAGGAAAAGCACCAGACGAACCTTGA
TGCGTTTGTAGACTTACTGCTTTTGGCTATGGCGCAAGAGCTGGTGACCT
CGTGTGGGGGCTACAGTCACTTGGCCAGAGAGCTGCACGAAGACCCGGCT
GTAGTGCTCTCGCTCTTAAGTTTGCCAAAGCCGAGACCAGGAGAGAATAT
GGATGCCCTTTTGGAAGCTGCTGCTGCTGTGGAGGGGGGAGTACAATTAG
AGATGATGAGTAAAACGTAG

Synonyms

Publications