jgi.p|Nanoce1779_2|36428, mRNA_5743 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|36428
Unique Name	mRNA_5743
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1802
Alignment location	scaffold_11:465835..467761 -

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Properties


Property Name	Value
TranscriptId	36514
Track	FilteredModels2
ProteinId	36428

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_11	supercontig	scaffold_11:465835..467761 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|36428	gene_5743	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|36428	mRNA_5743-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5743	CDS_5743	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_11:465835..467761-
coding sequence from alignment at scaffold_11:465835..467761-

mRNA sequence

>mRNA_5743 ID=mRNA_5743|Name=jgi.p|Nanoce1779_2|36428|organism=Nannochloropsis oceanica|type=mRNA|length=1802bp
CCCATTGTCTCCTCACACAACATCCCTCATCCCCTCCCTTTCCTCTCACA
CCTGAAAAGGCGGCAAGGACGTCCGCTTCGGCGTGGAAGGCCGCGCACAG
ATGCTCATGGGCGTCGACAAGCTAGCCGACGCCGTGCAAGTCACTTTGGG
TCCAAAGGGTCGCAACGCCATTATTGACCAGCCTTTTGGAGCCCCCAAGA
TTACGAAGGACGGAGTTACCGTTGCAAAGAGCATTGAGTTCAAGGAGCGC
TTCGTCAACATGGGTGCGGCGCTTGTACGGCAGGTGGCGAGCAAGACCAA
TGACATTGCTGGGGATGGAACGACGACAGCCACGGTCCTTACCCGGGCGA
TTTTCTCCGAGGGCTGCAAAGCTGTGGCTGCTGGGCTGAACCCAATGGAC
CTGCGAAGGGGGACGCAGTTGGCGGTGGATCACGTGGTGAAGGTGTTAAA
TGATATTTCGCGCGCTGTGACTAGTAAGGCGGAGGTGTCTCAGGTGGGGA
CAATCTCGGCCAACGGAGAGAAGGCCATTGGAGATTTGCTGGCGGATGCG
ATGGAGAGGGTGGGGAAGGAGGGCGTGATCACCGTGCAGGACGGCAAGAC
CCTGCACAACGAGTTGGAGGTGGTGGAAGGGATGAAATTCGATCGTGGGT
ACATCTCTCCTTATTTCATCACAGACAACAAGACTCAGGCGGCCGAGCTT
GAAAACCCTTACATCCTGTTAGTCGAGAAGAAAATCGCATCCATCCAATC
CCTCATCCCTCTATTGGAAATGGTGGTGAAGACCCAGCGTCCCCTTCTCA
TCATTGCGGAAGACGTCGAGTCCGAAGCCTTGGCGACGCTGGTCGTAAAC
AAACTGAGGGCAGGAATCAAAGTGGCTGCTGTGAAGGCTCCCGGTTTTGG
GGATAACAGGAAGGCGACTTTGCAAGATATTGCCGTCTTGACGGGCGGGC
AGGTGATCAGTGAGGACTTGGGGTTGAAAGTCGAGAATGTGACGGAGGAC
ATGTTGGGGACGTCCAAAAAGGTGACGGTCTCGAAAGATGACACCTTAAT
TTTACATGGCAATGGCGCGCGGGAGGCGATCGACGAGCGGTGCGTGTTGC
TTAAGGATTCCATCGCTGCCACTGCATCTGACTACGAGAAGGAGAAGCTG
CAGGAACGCCTAGCCAAACTCTCGGGGGGGGTGGCGGTGATCAAGGTTGG
TGGTGGAAGCGAGGTTGAGGTGAACGAGAAGAAGGACAGAGTGGTGGATG
CCTTGAACGCGACCAGGGCGGCTGTCGAGCAAGGAATTGTCCCGGGGGGG
GGGTTGGCACTGCTGTGGGCCAGCAAGCAGTTGGAGGAGGTCAAGAGTAA
ACTGACCAACATGGACCAGAGAATCGGCGTGGAGATCATCGAGAAGGCAC
TCAAGGCACCCGCGAGGTCGATCGCAAACAATGCTGGGGTGGAGGGGGCG
GTTGTGGTGGGGGAGTTGCTGAAGAAGGAAAAGCCGGAGTTGGGGTACAA
CGCCCAGACTGACGAGTACGTCAATATGTTCGAGGCGGGGATCATTGACC
CGACCAAGGTGGTAAGGACTGCTTTGGTAGATGCCCAGTCGGTTGCTGCC
TTGATGATTACGACCGAGTATAGAAGTTGAGGAGTATCGAATGTTTGGTA
CATACACTATTTCATTGAAGGGGTGTAAGCCCTGTGTGTGAATGTGTGTG
TCGGGGAATGGGGGGTTAGCGACTGACGGGCGGACTCATGGGGTGTATCT
GGTACGGTGTGTGGCGGGAATGAAGAGAGAGTGTGTGAGAGCGAGAAAGA
GA

protein sequence of jgi.p|Nanoce1779_2|36428

>mRNA_5743-protein ID=mRNA_5743-protein|Name=jgi.p|Nanoce1779_2|36428|organism=Nannochloropsis oceanica|type=polypeptide|length=510bp
MLMGVDKLADAVQVTLGPKGRNAIIDQPFGAPKITKDGVTVAKSIEFKER
FVNMGAALVRQVASKTNDIAGDGTTTATVLTRAIFSEGCKAVAAGLNPMD
LRRGTQLAVDHVVKVLNDISRAVTSKAEVSQVGTISANGEKAIGDLLADA
MERVGKEGVITVQDGKTLHNELEVVEGMKFDRGYISPYFITDNKTQAAEL
ENPYILLVEKKIASIQSLIPLLEMVVKTQRPLLIIAEDVESEALATLVVN
KLRAGIKVAAVKAPGFGDNRKATLQDIAVLTGGQVISEDLGLKVENVTED
MLGTSKKVTVSKDDTLILHGNGAREAIDERCVLLKDSIAATASDYEKEKL
QERLAKLSGGVAVIKVGGGSEVEVNEKKDRVVDALNATRAAVEQGIVPGG
GLALLWASKQLEEVKSKLTNMDQRIGVEIIEKALKAPARSIANNAGVEGA
VVVGELLKKEKPELGYNAQTDEYVNMFEAGIIDPTKVVRTALVDAQSVAA
LMITTEYRS*

mRNA from alignment at scaffold_11:465835..467761-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5743 ID=mRNA_5743|Name=jgi.p|Nanoce1779_2|36428|organism=Nannochloropsis oceanica|type=mRNA|length=1927bp|location=Sequence derived from alignment at scaffold_11:465835..467761- (Nannochloropsis oceanica)
CCCATTGTCTCCTCACACAACATCCCTCATCCCCTCCCTTTCCTCTCACA
CCTGAAAAGGCGGCAAGGACGTCCGCTTCGGCGTGGAAGGCCGCGCACAG
ATGCTCATGGGCGTCGACAAGCTAGCCGACGCCGTGCAAGTCACTTTGGG
TCCAAAGGGTCGCAACGCCATTATTGACCAGCCTTTTGGAGCCCCCAAGA
TTACGAAGGACGGAGTTACCGTTGCAAAGAGCATTGAGTTCAAGGAGCGC
TTCGTCAACATGGGTGCGGCGCTTGTACGGCAGGTGGCGAGCAAGACCAA
TGACATTGCTGGGGATGGAACGACGACAGCCACGGTCCTTACCCGGGCGA
TTTTCTCCGAGGGCTGCAAAGCTGTGGCTGCTGGGCTGAACCCAATGGAC
CTGCGAAGGGGGACGCAGTTGGCGGTGGATCACGTGGTGAAGGTGTTAAA
TGATATTTCGCGCGCTGTGACTAGTAAGGCGGAGGTGTCTCAGGTGGGGA
CAATCTCGGCCAACGGAGAGAAGGCCATTGGAGATTTGCTGGCGGATGCG
ATGGAGAGGGTGGGGAAGGAGGGCGTGATCACCGTGCAGGACGGCAAGAC
CCTGCACAACGAGTTGGAGGTGGTGGAAGGGATGAAATTCGATCGTGGGT
ACATCTCTCCTTATTTCATCACAGACAACAAGACTCAGGCGGCCGAGCTT
GAAAACCCTTACATCCTGTTAGTCGAGAAGAAAATCGCATCCATCCAATC
CCTCATCCCTCTATTGGAAATGGTGGTGAAGACCCAGCGTCCCCTTCTCA
TCATTGCGGAAGACGTCGAGTCCGAAGCCTTGGCGACGCTGGTCGTAAAC
AAACTGAGGGCAGGAATCAAAGTGGCTGCTGTGAAGGCTCCCGGTTTTGG
GGATAACAGGAAGGCGACTTTGCAAGATATTGCCGTCTTGACGGGCGGGC
AGGTGATCAGTGAGGACTTGGGGTTGAAAGTCGAGAATGTGACGGAGGAC
ATGTTGGGGACGTCCAAAAAGGTGACGGTCTCGAAAGATGACACCTTAAT
TTTACATGGCAATGGCGCGCGGGAGGCGATCGACGAGCGGTGCGTGTTGC
TTAAGGATTCCATCGCTGCCACTGCATCTGACTACGAGAAGGAGAAGCTG
CAGGAACGCCTAGCCAAACTCTCGGGGGGGGTGGCGGTGATCAAGGTTGG
TGGTGGAAGCGAGGTTGAGGTGAACGAGAAGAAGGACAGAGTGGTGGATG
CCTTGAACGCGACCAGGGCGGCTGTCGAGCAAGGAATTGTCCCGGGGGGG
GGGTTGGCACTGCTGTGGGCCAGCAAGCAGTTGGAGGAGGTCAAGAGTAA
ACTGACCAACATGGACCAGAGAATCGGCGTGGAGATCATCGAGAAGGCAC
TCAAGGCACCCGCGAGGTCGATCGCAAACAATGCTGGGGTGGAGGGGGCG
GTTGTGGTGGGGGAGTTGCTGAAGAAGGAAAAGCCGGAGTTGGGGTACAA
CGCCCAGACTGACGAGTACGTCAATATGTTCGAGGCGGGGATCATTGACC
CGACCAAGGTGGTAAGGACTGCTTTGGTAGATGCCCAGTCGGTTGCTGCC
TTGATGATTACGACCGAGGCAATGATTGCAGATTTGCCCAAGGAGGAGGG
GGAGGGGGGGGGGATGCCGGGAATGGGTGGGATGGGTGGGATGGGCGGGA
TGGGCGGGATGGGGTTCTAATGTGAGAGAAAGTGAGTACCGAGTATAGAA
GTTGAGGAGTATCGAATGTTTGGTACATACACTATTTCATTGAAGGGGTG
TAAGCCCTGTGTGTGAATGTGTGTGTCGGGGAATGGGGGGTTAGCGACTG
ACGGGCGGACTCATGGGGTGTATCTGGTACGGTGTGTGGCGGGAATGAAG
AGAGAGTGTGTGAGAGCGAGAAAGAGA

Coding sequence (CDS) from alignment at scaffold_11:465835..467761-

>mRNA_5743 ID=mRNA_5743|Name=jgi.p|Nanoce1779_2|36428|organism=Nannochloropsis oceanica|type=CDS|length=3060bp|location=Sequence derived from alignment at scaffold_11:465835..467761- (Nannochloropsis oceanica)
TATAGAAGTTGAATGCTCATGGGCGTCGACAAGCTAGCCGACGCCGTGCA
AGTCACTTTGGGTCCAAAGGGTCGCAACGCCATTATTGACCAGCCTTTTG
GAGCCCCCAAGATTACGAAGGACGGAGTTACCGTTGCAAAGAGCATTGAG
TTCAAGGAGCGCTTCGTCAACATGGGTGCGGCGCTTGTACGGCAGGTGGC
GAGCAAGACCAATGACATTGCTGGGGATGGAACGACGACAGCCACGGTCC
TTACCCGGGCGATTTTCTCCGAGGGCTGCAAAGCTGTGGCTGCTGGGCTG
AACCCAATGGACCTGCGAAGGGGGACGCAGTTGGCGGTGGATCACGTGGT
GAAGGTGTTAAATGATATTTCGCGCGCTGTGACTAGTAAGGCGGAGGTGT
CTCAGGTGGGGACAATCTCGGCCAACGGAGAGAAGGCCATTGGAGATTTG
CTGGCGGATGCGATGGAGAGGGTGGGGAAGGAGGGCGTGATCACCGTGCA
GGACGGCAAGACCCTGCACAACGAGTTGGAGGTGGTGGAAGGGATGAAAT
TCGATCGTGGGTACATCTCTCCTTATTTCATCACAGACAACAAGACTCAG
GCGGCCGAGCTTGAAAACCCTTACATCCTGTTAGTCGAGAAGAAAATCGC
ATCCATCCAATCCCTCATCCCTCTATTGGAAATGGTGGTGAAGACCCAGC
GTCCCCTTCTCATCATTGCGGAAGACGTCGAGTCCGAAGCCTTGGCGACG
CTGGTCGTAAACAAACTGAGGGCAGGAATCAAAGTGGCTGCTGTGAAGGC
TCCCGGTTTTGGGGATAACAGGAAGGCGACTTTGCAAGATATTGCCGTCT
TGACGGGCGGGCAGGTGATCAGTGAGGACTTGGGGTTGAAAGTCGAGAAT
GTGACGGAGGACATGTTGGGGACGTCCAAAAAGGTGACGGTCTCGAAAGA
TGACACCTTAATTTTACATGGCAATGGCGCGCGGGAGGCGATCGACGAGC
GGTGCGTGTTGCTTAAGGATTCCATCGCTGCCACTGCATCTGACTACGAG
AAGGAGAAGCTGCAGGAACGCCTAGCCAAACTCTCGGGGGGGGTGGCGGT
GATCAAGGTTGGTGGTGGAAGCGAGGTTGAGGTGAACGAGAAGAAGGACA
GAGTGGTGGATGCCTTGAACGCGACCAGGGCGGCTGTCGAGCAAGGAATT
GTCCCGGGGGGGGGGTTGGCACTGCTGTGGGCCAGCAAGCAGTTGGAGGA
GGTCAAGAGTAAACTGACCAACATGGACCAGAGAATCGGCGTGGAGATCA
TCGAGAAGGCACTCAAGGCACCCGCGAGGTCGATCGCAAACAATGCTGGG
GTGGAGGGGGCGGTTGTGGTGGGGGAGTTGCTGAAGAAGGAAAAGCCGGA
GTTGGGGTACAACGCCCAGACTGACGAGTACGTCAATATGTTCGAGGCGG
GGATCATTGACCCGACCAAGGTGGTAAGGACTGCTTTGGTAGATGCCCAG
TCGGTTGCTGCCTTGATGATTACGACCGAGTATAGAAGTTGAATGCTCAT
GGGCGTCGACAAGCTAGCCGACGCCGTGCAAGTCACTTTGGGTCCAAAGG
GTCGCAACGCCATTATTGACCAGCCTTTTGGAGCCCCCAAGATTACGAAG
GACGGAGTTACCGTTGCAAAGAGCATTGAGTTCAAGGAGCGCTTCGTCAA
CATGGGTGCGGCGCTTGTACGGCAGGTGGCGAGCAAGACCAATGACATTG
CTGGGGATGGAACGACGACAGCCACGGTCCTTACCCGGGCGATTTTCTCC
GAGGGCTGCAAAGCTGTGGCTGCTGGGCTGAACCCAATGGACCTGCGAAG
GGGGACGCAGTTGGCGGTGGATCACGTGGTGAAGGTGTTAAATGATATTT
CGCGCGCTGTGACTAGTAAGGCGGAGGTGTCTCAGGTGGGGACAATCTCG
GCCAACGGAGAGAAGGCCATTGGAGATTTGCTGGCGGATGCGATGGAGAG
GGTGGGGAAGGAGGGCGTGATCACCGTGCAGGACGGCAAGACCCTGCACA
ACGAGTTGGAGGTGGTGGAAGGGATGAAATTCGATCGTGGGTACATCTCT
CCTTATTTCATCACAGACAACAAGACTCAGGCGGCCGAGCTTGAAAACCC
TTACATCCTGTTAGTCGAGAAGAAAATCGCATCCATCCAATCCCTCATCC
CTCTATTGGAAATGGTGGTGAAGACCCAGCGTCCCCTTCTCATCATTGCG
GAAGACGTCGAGTCCGAAGCCTTGGCGACGCTGGTCGTAAACAAACTGAG
GGCAGGAATCAAAGTGGCTGCTGTGAAGGCTCCCGGTTTTGGGGATAACA
GGAAGGCGACTTTGCAAGATATTGCCGTCTTGACGGGCGGGCAGGTGATC
AGTGAGGACTTGGGGTTGAAAGTCGAGAATGTGACGGAGGACATGTTGGG
GACGTCCAAAAAGGTGACGGTCTCGAAAGATGACACCTTAATTTTACATG
GCAATGGCGCGCGGGAGGCGATCGACGAGCGGTGCGTGTTGCTTAAGGAT
TCCATCGCTGCCACTGCATCTGACTACGAGAAGGAGAAGCTGCAGGAACG
CCTAGCCAAACTCTCGGGGGGGGTGGCGGTGATCAAGGTTGGTGGTGGAA
GCGAGGTTGAGGTGAACGAGAAGAAGGACAGAGTGGTGGATGCCTTGAAC
GCGACCAGGGCGGCTGTCGAGCAAGGAATTGTCCCGGGGGGGGGGTTGGC
ACTGCTGTGGGCCAGCAAGCAGTTGGAGGAGGTCAAGAGTAAACTGACCA
ACATGGACCAGAGAATCGGCGTGGAGATCATCGAGAAGGCACTCAAGGCA
CCCGCGAGGTCGATCGCAAACAATGCTGGGGTGGAGGGGGCGGTTGTGGT
GGGGGAGTTGCTGAAGAAGGAAAAGCCGGAGTTGGGGTACAACGCCCAGA
CTGACGAGTACGTCAATATGTTCGAGGCGGGGATCATTGACCCGACCAAG
GTGGTAAGGACTGCTTTGGTAGATGCCCAGTCGGTTGCTGCCTTGATGAT
TACGACCGAG

Synonyms

Publications