jgi.p|Nanoce1779_2|528592, mRNA_5739 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|528592
Unique Name	mRNA_5739
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1275
Alignment location	scaffold_11:455874..457334 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	528678
Track	FilteredModels2
ProteinId	528592

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_11	supercontig	scaffold_11:455874..457334 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|528592	gene_5739	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|528592	mRNA_5739-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5739	CDS_5739	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_11:455874..457334+
coding sequence from alignment at scaffold_11:455874..457334+

mRNA sequence

>mRNA_5739 ID=mRNA_5739|Name=jgi.p|Nanoce1779_2|528592|organism=Nannochloropsis oceanica|type=mRNA|length=1275bp
ATGACCAAGATAAGGAAGAGTATCGCCTTGGCCGAGTGGTGGTCGGCATT
ACGCTTCGGGCCCTCCTTGGGTGAGGGCGGGTTTTCCCAGGTGGTGGAGA
TGCTGGACATGCGCAATGGCGAGCGGTTGGCAGTTAAGGTCATGCATGTC
CGCCGACGGATGGAGCGGGACCAGGCCTTGGCTGAAACGGATATTTTGGC
CTTGGTTAGGAAGCGGATTCAACACCCGCACCTGATGGCGCCTCGGCGCA
TTTACGTAGAGGGTTGCCGAGTCTGGATCATGTTCCCCCTGTGTCGTGGG
GGCGACCTGCTCCAGCGCCTGGTCAGCAGGGGCCGTGGGTCGGAAGCCGA
AGCCGCCGTGGTAGTATCTCGACTGTTGTCGGCGGTGCAGGCTCTTCACC
AGCATGGTGTGCTTCACTTGGACATCAAGCCTGAGAACGTGCTGTTCGTC
AAGGAAGAGGACCTGTCACAGGTTCTTCTCACGGATTTTGGCCTGTCGCG
CAAGATGCAGCCGACGAATCGGCTCGGGATGCGGAGCAGCCGATATGGGA
AAGGCATAATCAAGAAGTTGGAGCGCGTGAATGGCACCATTGGCTACATG
GCGCCCGAGGTGATTTTGCACAAGCGCTACACGCCGTCAGCTGACGTCTG
GAGTCTGGGGGTGGTGCTTCATATATGTTTGGTCGGCTACGCGCCCTTTC
AACACCAGCAGCAGGAGCGCCAGCAGGAGGTGGGTGGAAGTTGCAGCAGT
CACCAGGACGCTCTAGAACGCTCGGTACGGGGAGAGTTTGTCATGGACGA
GCTGGATTGGGCACGGATCTCACCTGCAGCGAAAGACTTGACACGGCGCA
TGCTGACAGTCGACGAGACCGCGCGCATCACCATTGCGGACGCATTGCGC
CATCCTTGGGTGCAGCACTGCACCAAGAAAGGGGAAGGAGTCGACACGGT
AGGAAATGGAGGGAAAGTGCGCGTCGTTTCCTCGTCTGTGTCAGCCAAGA
AGGACCCAGCTAGTTTTCTGCCCTCCAATCTTCAGGGCCACGACAGCGAC
CACTTCGATGGCGGGACAACCCAGCCTTTCTCTTCTTTCCGCACCCTCTT
TGATAGTGCTGTTGTCCGCGGCTCCTCTTTTCTCTCCTCGATAACCAACA
TCTCGACATCCAACCACAATGGTGACTCGCCTCCTACCACCACCACCACC
ACCTCCTCCTCCTCGTCCTCCTCATCCTCCTCCCTCCCCGTCTTGAGTGG
GGGCTGGAAAGTCAATGATGTTTGA

protein sequence of jgi.p|Nanoce1779_2|528592

>mRNA_5739-protein ID=mRNA_5739-protein|Name=jgi.p|Nanoce1779_2|528592|organism=Nannochloropsis oceanica|type=polypeptide|length=425bp
MTKIRKSIALAEWWSALRFGPSLGEGGFSQVVEMLDMRNGERLAVKVMHV
RRRMERDQALAETDILALVRKRIQHPHLMAPRRIYVEGCRVWIMFPLCRG
GDLLQRLVSRGRGSEAEAAVVVSRLLSAVQALHQHGVLHLDIKPENVLFV
KEEDLSQVLLTDFGLSRKMQPTNRLGMRSSRYGKGIIKKLERVNGTIGYM
APEVILHKRYTPSADVWSLGVVLHICLVGYAPFQHQQQERQQEVGGSCSS
HQDALERSVRGEFVMDELDWARISPAAKDLTRRMLTVDETARITIADALR
HPWVQHCTKKGEGVDTVGNGGKVRVVSSSVSAKKDPASFLPSNLQGHDSD
HFDGGTTQPFSSFRTLFDSAVVRGSSFLSSITNISTSNHNGDSPPTTTTT
TSSSSSSSSSSLPVLSGGWKVNDV*

mRNA from alignment at scaffold_11:455874..457334+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5739 ID=mRNA_5739|Name=jgi.p|Nanoce1779_2|528592|organism=Nannochloropsis oceanica|type=mRNA|length=1461bp|location=Sequence derived from alignment at scaffold_11:455874..457334+ (Nannochloropsis oceanica)
ATGACCAAGATAAGGAAGAGTATCGCCTTGGCCGAGTGGTGGTCGGCATT
ACGCTTCGGGCCCTCCTTGGGTGAGGGCGGGTTTTCCCAGGTGGTGGAGA
TGCTGGACATGCGCAATGGCGAGCGGTTGGCAGTTAAGGTCATGCATGTC
CGCCGACGGATGGAGCGGGACCAGGCCTTGGCTGAAACGGATATTTTGGC
CTTGGTTAGGAAGCGGATTCAACACCCGCACCTGATGGCGCCTCGGCGCA
TTTACGTAGAGGGTTGCCGAGTCTGGATCATGTTCCCCCTGTGTCGTGGG
GGCGACCTGCTCCAGCGCCTGGTCAGCAGGGGCCGTGGGTCGGAAGCCGA
AGCCGCCGTGGTAGTATCTCGACTGTTGTCGGCGGTGCAGGCTCTTCACC
AGCATGGTGTGCTTCACTTGGACATCAAGCCTGAGAACGTGCTGTTCGTC
AAGGAAGAGGACCTGTCACAGGTTCTTCTCACGGATTTTGGCCTGTCGCG
CAAGATGCAGCCGACGAATCGGCTCGGGATGCGGAGCAGCCGATATGGGA
AAGGCATAATCAAGAAGTTGGAGGTGAGGGCTGCAGTAAGCGAGTGTGTT
GCAGGAAAAGAGGGGTGGGGCGGTGAGGAGGAGGAGGAGGAGGAGGAGGA
GGGGAGGGAGGAGGAGACAGAAGAGGGGGATGATAATGAGGAGAAGGAGG
ACGCCGAGCAGGACTGGGACTACTTGTCGCGCCTGCGATATAATTTGGCA
TTCGACGAGCGCGTGAATGGCACCATTGGCTACATGGCGCCCGAGGTGAT
TTTGCACAAGCGCTACACGCCGTCAGCTGACGTCTGGAGTCTGGGGGTGG
TGCTTCATATATGTTTGGTCGGCTACGCGCCCTTTCAACACCAGCAGCAG
GAGCGCCAGCAGGAGGTGGGTGGAAGTTGCAGCAGTCACCAGGACGCTCT
AGAACGCTCGGTACGGGGAGAGTTTGTCATGGACGAGCTGGATTGGGCAC
GGATCTCACCTGCAGCGAAAGACTTGACACGGCGCATGCTGACAGTCGAC
GAGACCGCGCGCATCACCATTGCGGACGCATTGCGCCATCCTTGGGTGCA
GCACTGCACCAAGAAAGGGGAAGGAGTCGACACGGTAGGAAATGGAGGGA
AAGTGCGCGTCGTTTCCTCGTCTGTGTCAGCCAAGAAGGACCCAGCTAGT
TTTCTGCCCTCCAATCTTCAGGGCCACGACAGCGACCACTTCGATGGCGG
GACAACCCAGCCTTTCTCTTCTTTCCGCACCCTCTTTGATAGTGCTGTTG
TCCGCGGCTCCTCTTTTCTCTCCTCGATAACCAACATCTCGACATCCAAC
CACAATGGTGACTCGCCTCCTACCACCACCACCACCACCTCCTCCTCCTC
GTCCTCCTCATCCTCCTCCCTCCCCGTCTTGAGTGGGGGCTGGAAAGTCA
ATGATGTTTGA

Coding sequence (CDS) from alignment at scaffold_11:455874..457334+

>mRNA_5739 ID=mRNA_5739|Name=jgi.p|Nanoce1779_2|528592|organism=Nannochloropsis oceanica|type=CDS|length=2550bp|location=Sequence derived from alignment at scaffold_11:455874..457334+ (Nannochloropsis oceanica)
ATGACCAAGATAAGGAAGAGTATCGCCTTGGCCGAGTGGTGGTCGGCATT
ACGCTTCGGGCCCTCCTTGGGTGAGGGCGGGTTTTCCCAGGTGGTGGAGA
TGCTGGACATGCGCAATGGCGAGCGGTTGGCAGTTAAGGTCATGCATGTC
CGCCGACGGATGGAGCGGGACCAGGCCTTGGCTGAAACGGATATTTTGGC
CTTGGTTAGGAAGCGGATTCAACACCCGCACCTGATGGCGCCTCGGCGCA
TTTACGTAGAGGGTTGCCGAGTCTGGATCATGTTCCCCCTGTGTCGTGGG
GGCGACCTGCTCCAGCGCCTGGTCAGCAGGGGCCGTGGGTCGGAAGCCGA
AGCCGCCGTGGTAGTATCTCGACTGTTGTCGGCGGTGCAGGCTCTTCACC
AGCATGGTGTGCTTCACTTGGACATCAAGCCTGAGAACGTGCTGTTCGTC
AAGGAAGAGGACCTGTCACAGGTTCTTCTCACGGATTTTGGCCTGTCGCG
CAAGATGCAGCCGACGAATCGGCTCGGGATGCGGAGCAGCCGATATGGGA
AAGGCATAATCAAGAAGTTGGAGCGCGTGAATGGCACCATTGGCTACATG
GCGCCCGAGGTGATTTTGCACAAGCGCTACACGCCGTCAGCTGACGTCTG
GAGTCTGGGGGTGGTGCTTCATATATGTTTGGTCGGCTACGCGCCCTTTC
AACACCAGCAGCAGGAGCGCCAGCAGGAGGTGGGTGGAAGTTGCAGCAGT
CACCAGGACGCTCTAGAACGCTCGGTACGGGGAGAGTTTGTCATGGACGA
GCTGGATTGGGCACGGATCTCACCTGCAGCGAAAGACTTGACACGGCGCA
TGCTGACAGTCGACGAGACCGCGCGCATCACCATTGCGGACGCATTGCGC
CATCCTTGGGTGCAGCACTGCACCAAGAAAGGGGAAGGAGTCGACACGGT
AGGAAATGGAGGGAAAGTGCGCGTCGTTTCCTCGTCTGTGTCAGCCAAGA
AGGACCCAGCTAGTTTTCTGCCCTCCAATCTTCAGGGCCACGACAGCGAC
CACTTCGATGGCGGGACAACCCAGCCTTTCTCTTCTTTCCGCACCCTCTT
TGATAGTGCTGTTGTCCGCGGCTCCTCTTTTCTCTCCTCGATAACCAACA
TCTCGACATCCAACCACAATGGTGACTCGCCTCCTACCACCACCACCACC
ACCTCCTCCTCCTCGTCCTCCTCATCCTCCTCCCTCCCCGTCTTGAGTGG
GGGCTGGAAAGTCAATGATGTTTGAATGACCAAGATAAGGAAGAGTATCG
CCTTGGCCGAGTGGTGGTCGGCATTACGCTTCGGGCCCTCCTTGGGTGAG
GGCGGGTTTTCCCAGGTGGTGGAGATGCTGGACATGCGCAATGGCGAGCG
GTTGGCAGTTAAGGTCATGCATGTCCGCCGACGGATGGAGCGGGACCAGG
CCTTGGCTGAAACGGATATTTTGGCCTTGGTTAGGAAGCGGATTCAACAC
CCGCACCTGATGGCGCCTCGGCGCATTTACGTAGAGGGTTGCCGAGTCTG
GATCATGTTCCCCCTGTGTCGTGGGGGCGACCTGCTCCAGCGCCTGGTCA
GCAGGGGCCGTGGGTCGGAAGCCGAAGCCGCCGTGGTAGTATCTCGACTG
TTGTCGGCGGTGCAGGCTCTTCACCAGCATGGTGTGCTTCACTTGGACAT
CAAGCCTGAGAACGTGCTGTTCGTCAAGGAAGAGGACCTGTCACAGGTTC
TTCTCACGGATTTTGGCCTGTCGCGCAAGATGCAGCCGACGAATCGGCTC
GGGATGCGGAGCAGCCGATATGGGAAAGGCATAATCAAGAAGTTGGAGCG
CGTGAATGGCACCATTGGCTACATGGCGCCCGAGGTGATTTTGCACAAGC
GCTACACGCCGTCAGCTGACGTCTGGAGTCTGGGGGTGGTGCTTCATATA
TGTTTGGTCGGCTACGCGCCCTTTCAACACCAGCAGCAGGAGCGCCAGCA
GGAGGTGGGTGGAAGTTGCAGCAGTCACCAGGACGCTCTAGAACGCTCGG
TACGGGGAGAGTTTGTCATGGACGAGCTGGATTGGGCACGGATCTCACCT
GCAGCGAAAGACTTGACACGGCGCATGCTGACAGTCGACGAGACCGCGCG
CATCACCATTGCGGACGCATTGCGCCATCCTTGGGTGCAGCACTGCACCA
AGAAAGGGGAAGGAGTCGACACGGTAGGAAATGGAGGGAAAGTGCGCGTC
GTTTCCTCGTCTGTGTCAGCCAAGAAGGACCCAGCTAGTTTTCTGCCCTC
CAATCTTCAGGGCCACGACAGCGACCACTTCGATGGCGGGACAACCCAGC
CTTTCTCTTCTTTCCGCACCCTCTTTGATAGTGCTGTTGTCCGCGGCTCC
TCTTTTCTCTCCTCGATAACCAACATCTCGACATCCAACCACAATGGTGA
CTCGCCTCCTACCACCACCACCACCACCTCCTCCTCCTCGTCCTCCTCAT
CCTCCTCCCTCCCCGTCTTGAGTGGGGGCTGGAAAGTCAATGATGTTTGA

Synonyms

Publications