jgi.p|Nanoce1779_2|590174, mRNA_5738 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|590174
Unique NamemRNA_5738
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1265
Alignment locationscaffold_11:453354..454618 +

Link to JBrowse

Properties
Property NameValue
TranscriptId590260
TrackFilteredModels2
ProteinId590174
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:453354..454618 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590174gene_5738Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590174mRNA_5738-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5738CDS_5738Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5738 ID=mRNA_5738|Name=jgi.p|Nanoce1779_2|590174|organism=Nannochloropsis oceanica|type=mRNA|length=1265bp
GGGGCGGTGGGGATGGGCGGGAACGAGGCGGCCGCGGCCATGGACCCAAA
ACAGAGCTATGAGCAGTTGCTGGAGGCCTTCTTGGGTCTTGACTTTGGGG
ATGCCTCGTATGTGCGGGAGGTAGTAGAGGCCAACTATGAGCGATGCACC
ATGGAGTTCTTGGACCTGCTGGGCGAGCGCCTGGCAGATGCCTCCACGCC
TTCCGACATGCTCTCCCGCCTGACGGCTCTTAAGGGCCACATCGAGTATA
TTCTGCAGGAGCGCATGTCCCGAGCGGCGGAGCGTTTGCAAAACATCGTC
AAGGCCGGGGCCGTGGACGCCATGCTCGAGAAGATTTACGAGCTGAACGA
CCGGGGCGAAATTGATGAGCCCTTTATCTTGCTACTCGAGACGAATGTGC
AGCAGGCGGAGCGAGCTGGGGCAGCTCCTGCGGCGGAATTATTTCGCAAA
CTCGTGGCCACGGCCCGGGAAGCGATCGACGAGAAGCTGACTCCGTCCAC
GCGGTTGGTCCGACGCTTGCTGCGGGTGACCGACTCGGAGAAGCGCAAGG
AGGTGTTGCACGACGCCTTTCGACCCAAGGCCACCTCCTTGACGGCAGAG
GGGGCTAAAACCGAGGCTATGCCGGACGTGCCCCCGCCCGATTTCATCGA
GGAGCTCCGGCAGCTCATCAAGAACTTTGGGAACATCGAGGCCAACGACT
TTGGGGCCATGCTGCGGGCCCTGGTGGAGGAGGCGGAAGAGGTCTCCACC
ACTATCTATGGCAAGGCCATGACCCATCGCGAGCAACAGGACTACATGTG
GCAGAAGGGCTCCGTCTCGGTCTTTGACCTTGAGGCCTTGGAAGGCAAGG
CGCAGGCAACAGGTGAGCAAATGCCATGGCAAAATGATGCCTATGACTCC
ATGATGCCCCCAGGTTTTGAGAACGGCGTCCGCACCATTGGCGGCAACGA
CAAGAGCAAATTTTGACATGTCAATGACGGGTGCAGATGAAAGGGAATGT
GATGGATAGTTGATAATGATTGATTACATGTGATTTTAAAACCGAGGTAG
GCGATGGAGAGAAGGCACGGTGTGCATGGCGGATGATGTGTTTTTGTTTA
TGTGAGGCAGAAAGCCAGATGCCTGCACAAAAAAAGCAAACAAACAAAAA
TGCATACACAGCGCAATCGTGGTTTTCGTTCGCCATCTCATGCTTTCCTC
TGACTTAGGAGATCGAAGCGCTGAAACGAGCGACACGCATCGTGACGCAC
CACGTTCAAAGTGAC
back to top

protein sequence of jgi.p|Nanoce1779_2|590174

>mRNA_5738-protein ID=mRNA_5738-protein|Name=jgi.p|Nanoce1779_2|590174|organism=Nannochloropsis oceanica|type=polypeptide|length=318bp
MGGNEAAAAMDPKQSYEQLLEAFLGLDFGDASYVREVVEANYERCTMEFL
DLLGERLADASTPSDMLSRLTALKGHIEYILQERMSRAAERLQNIVKAGA
VDAMLEKIYELNDRGEIDEPFILLLETNVQQAERAGAAPAAELFRKLVAT
AREAIDEKLTPSTRLVRRLLRVTDSEKRKEVLHDAFRPKATSLTAEGAKT
EAMPDVPPPDFIEELRQLIKNFGNIEANDFGAMLRALVEEAEEVSTTIYG
KAMTHREQQDYMWQKGSVSVFDLEALEGKAQATGEQMPWQNDAYDSMMPP
GFENGVRTIGGNDKSKF*
back to top

mRNA from alignment at scaffold_11:453354..454618+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5738 ID=mRNA_5738|Name=jgi.p|Nanoce1779_2|590174|organism=Nannochloropsis oceanica|type=mRNA|length=1265bp|location=Sequence derived from alignment at scaffold_11:453354..454618+ (Nannochloropsis oceanica)
GGGGCGGTGGGGATGGGCGGGAACGAGGCGGCCGCGGCCATGGACCCAAA
ACAGAGCTATGAGCAGTTGCTGGAGGCCTTCTTGGGTCTTGACTTTGGGG
ATGCCTCGTATGTGCGGGAGGTAGTAGAGGCCAACTATGAGCGATGCACC
ATGGAGTTCTTGGACCTGCTGGGCGAGCGCCTGGCAGATGCCTCCACGCC
TTCCGACATGCTCTCCCGCCTGACGGCTCTTAAGGGCCACATCGAGTATA
TTCTGCAGGAGCGCATGTCCCGAGCGGCGGAGCGTTTGCAAAACATCGTC
AAGGCCGGGGCCGTGGACGCCATGCTCGAGAAGATTTACGAGCTGAACGA
CCGGGGCGAAATTGATGAGCCCTTTATCTTGCTACTCGAGACGAATGTGC
AGCAGGCGGAGCGAGCTGGGGCAGCTCCTGCGGCGGAATTATTTCGCAAA
CTCGTGGCCACGGCCCGGGAAGCGATCGACGAGAAGCTGACTCCGTCCAC
GCGGTTGGTCCGACGCTTGCTGCGGGTGACCGACTCGGAGAAGCGCAAGG
AGGTGTTGCACGACGCCTTTCGACCCAAGGCCACCTCCTTGACGGCAGAG
GGGGCTAAAACCGAGGCTATGCCGGACGTGCCCCCGCCCGATTTCATCGA
GGAGCTCCGGCAGCTCATCAAGAACTTTGGGAACATCGAGGCCAACGACT
TTGGGGCCATGCTGCGGGCCCTGGTGGAGGAGGCGGAAGAGGTCTCCACC
ACTATCTATGGCAAGGCCATGACCCATCGCGAGCAACAGGACTACATGTG
GCAGAAGGGCTCCGTCTCGGTCTTTGACCTTGAGGCCTTGGAAGGCAAGG
CGCAGGCAACAGGTGAGCAAATGCCATGGCAAAATGATGCCTATGACTCC
ATGATGCCCCCAGGTTTTGAGAACGGCGTCCGCACCATTGGCGGCAACGA
CAAGAGCAAATTTTGACATGTCAATGACGGGTGCAGATGAAAGGGAATGT
GATGGATAGTTGATAATGATTGATTACATGTGATTTTAAAACCGAGGTAG
GCGATGGAGAGAAGGCACGGTGTGCATGGCGGATGATGTGTTTTTGTTTA
TGTGAGGCAGAAAGCCAGATGCCTGCACAAAAAAAGCAAACAAACAAAAA
TGCATACACAGCGCAATCGTGGTTTTCGTTCGCCATCTCATGCTTTCCTC
TGACTTAGGAGATCGAAGCGCTGAAACGAGCGACACGCATCGTGACGCAC
CACGTTCAAAGTGAC
back to top

Coding sequence (CDS) from alignment at scaffold_11:453354..454618+

>mRNA_5738 ID=mRNA_5738|Name=jgi.p|Nanoce1779_2|590174|organism=Nannochloropsis oceanica|type=CDS|length=954bp|location=Sequence derived from alignment at scaffold_11:453354..454618+ (Nannochloropsis oceanica)
ATGGGCGGGAACGAGGCGGCCGCGGCCATGGACCCAAAACAGAGCTATGA
GCAGTTGCTGGAGGCCTTCTTGGGTCTTGACTTTGGGGATGCCTCGTATG
TGCGGGAGGTAGTAGAGGCCAACTATGAGCGATGCACCATGGAGTTCTTG
GACCTGCTGGGCGAGCGCCTGGCAGATGCCTCCACGCCTTCCGACATGCT
CTCCCGCCTGACGGCTCTTAAGGGCCACATCGAGTATATTCTGCAGGAGC
GCATGTCCCGAGCGGCGGAGCGTTTGCAAAACATCGTCAAGGCCGGGGCC
GTGGACGCCATGCTCGAGAAGATTTACGAGCTGAACGACCGGGGCGAAAT
TGATGAGCCCTTTATCTTGCTACTCGAGACGAATGTGCAGCAGGCGGAGC
GAGCTGGGGCAGCTCCTGCGGCGGAATTATTTCGCAAACTCGTGGCCACG
GCCCGGGAAGCGATCGACGAGAAGCTGACTCCGTCCACGCGGTTGGTCCG
ACGCTTGCTGCGGGTGACCGACTCGGAGAAGCGCAAGGAGGTGTTGCACG
ACGCCTTTCGACCCAAGGCCACCTCCTTGACGGCAGAGGGGGCTAAAACC
GAGGCTATGCCGGACGTGCCCCCGCCCGATTTCATCGAGGAGCTCCGGCA
GCTCATCAAGAACTTTGGGAACATCGAGGCCAACGACTTTGGGGCCATGC
TGCGGGCCCTGGTGGAGGAGGCGGAAGAGGTCTCCACCACTATCTATGGC
AAGGCCATGACCCATCGCGAGCAACAGGACTACATGTGGCAGAAGGGCTC
CGTCTCGGTCTTTGACCTTGAGGCCTTGGAAGGCAAGGCGCAGGCAACAG
GTGAGCAAATGCCATGGCAAAATGATGCCTATGACTCCATGATGCCCCCA
GGTTTTGAGAACGGCGTCCGCACCATTGGCGGCAACGACAAGAGCAAATT
TTGA
back to top
Synonyms
Publications