|
Properties
Property Name | Value |
TranscriptId | 590249 |
Track | FilteredModels2 |
ProteinId | 590163 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_11 | supercontig | scaffold_11:447563..449855 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5736 ID=mRNA_5736|Name=jgi.p|Nanoce1779_2|590163|organism=Nannochloropsis oceanica|type=mRNA|length=2068bp GAAAAAAATAGCATGGAGGGGGCACAAACTTCAGCAGCAGCAGCAGCAGC AACAACAACAGCAACAGCAACAACAACCACAACAACAACAACAACAACAA CAACAGCAGCAGCAGCAGCATCTTCATCTTCAGCAGCATCTTCAGTGGCA GGCGGCGGACGAGGGAGCAGTCGCAGCGCCACCCCAACCCAACATAGCGC GAGCCCGCAAGCGAGCGGGGGAGATTCGCGCTTCGATTGCAATGTGTGCC TGTCGGAAGTTGAGGATCCAGTTGTGACGCTGTGCGGACATTTGTACTGC TGGTCTTGTTTGTACCGCTGGTTAAACACGAACCACACGTGCCCCGTGTG CAAGGCAGGAGTCACCAAGGAAAACGTAATTCCTCTTTACGGGCGAGGGA GCGAGCAAGTGGACCCTCGGACGAAGACTCGGCGGGCAAGAGGCGGTGTG GGGACAGGACAGGAAGCGACGGACGTGCCGGGACGCCCAACCGCACAGCG GCCACAAGCTAGCACGTTTATCGGAGGCACGCCGGCTTTCATGGGAGGCC TTCCATTCAACGCCTTCGGGACGACGAATCACTATACGGGAGGACCGGGG GGGATGGGAGGCTCCGCTGCTGGCGGGGGCATGGTGTCGTTTTCGGCCGG TTTCGGCTTCTTCCCATCCTTGTTCGGCCTTCAATTTCAAACTTTCGTAC CCTCGTCCTCTTCTTCCTTCGCTTCCGGTACAACGGCAGCTGGCACACGG GGAGCGACTGGCGGAAGTGGAAGTGGGGTAAACTCGACAGCTGACGAAGC TCAGCAAGCCTTCCTTTCCAAACTTCTGCTCATGCTGGGCATTTTTACGC TTGGCGTCTTGGTCTTTTGCTAACGCCCTGTGAGTAGATAATACCCTTTC ATACACAGAGCACACAAACGGTACATGTAGATAGGAAATGTTTCGCACGA AGAAAAATAGTGAAGGTTTCTACATGAAATGAGAGAATGGATTGGCCAGT GTAATGGTCCACGTCAGGAACGGACGGAGTTAGACGCGCAGTCAAGAAGG GCCCGAGATATGACGATGGAAAGGAAGAAAACACACATTGTTGTCCAGTG AGAGAAAGTACAAATATCGTTGCCTGGATTCTACACATTGACATTTTTTT CGAGGGCTAATGTGGAGGACGAGTTCATTGTTTCTCTAACGTGCAATTGA ACAGTCGTCTCATCATCGCTACCACCCTCCCACGCACAGGGCACACTCTG CGTCATCAGTCACCAACACACGCACGCTCCTCCTCTATCTGCACTACCTG CAGAGCTCTTTCACCTTGCATGCCTCGAAATCGCCCGTCTTGCTAAGCTT ACACCATCGACGCCAGCTAGTCTGTAGCCGCATCGTCATGGGCGGGCTGC TAAGCAAAGGGATTGAGTACGAAGCTGATGGCATGACGGTGAGACAATGT CTTTTCTGTGACATTGCGGCTGACAAACCAGGCCTTAGACAGACAGCTGT GGCTTTTGAGGACGACAAGGTGGTGGTCTTTGCCCCCCTGGAGCCATGCG CCTCAGAGCACTGGCTGGTCGTACCTCGGGCTCACCATCGTAGTGCTAGC ACCTTGACGGCTAATGACTTACCTCTCCTGGTGCACATGAAAAACATTGG CTCCCAAATACTCGAACAAAAACAACCCGGGAAGAGCCCTCAAGACACCC GCTTCTGCTTCCATGTCGAGCCGTTTAATTCAATTGCTCACTTACACTTA CACTGCCAAGTCTTGCCTTTCTTATCGCCCCTGTCATCGTGGAAGTACAA GGTCGGCACACAGTGGTGCTGGAGCTATGACTCTGTGAGATTGCGTCTGG AAGAGGAATAATTCGCTCCTTAAAAAAACGCTGGTGGCTGGTTTAGACGG TTGCTATCTCCCCTTATTTGATGGCTGTGAGTGAACCTCCGTATACCTAT TCGTGTTGATCCATCTGTTACCGGAACCTCCTTCTGGATGAGTGCATGGT AGGAATGAGGACAAGCAGCATATATAATTACATAAGTGGTTTGGATGAAG CAAGATCTCAATCTGTGT back to topprotein sequence of jgi.p|Nanoce1779_2|590163 >mRNA_5736-protein ID=mRNA_5736-protein|Name=jgi.p|Nanoce1779_2|590163|organism=Nannochloropsis oceanica|type=polypeptide|length=287bp MEGAQTSAAAAAATTTATATTTTTTTTTTTTAAAAASSSSAASSVAGGGR GSSRSATPTQHSASPQASGGDSRFDCNVCLSEVEDPVVTLCGHLYCWSCL YRWLNTNHTCPVCKAGVTKENVIPLYGRGSEQVDPRTKTRRARGGVGTGQ EATDVPGRPTAQRPQASTFIGGTPAFMGGLPFNAFGTTNHYTGGPGGMGG SAAGGGMVSFSAGFGFFPSLFGLQFQTFVPSSSSSFASGTTAAGTRGATG GSGSGVNSTADEAQQAFLSKLLLMLGIFTLGVLVFC* back to topmRNA from alignment at scaffold_11:447563..449855- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5736 ID=mRNA_5736|Name=jgi.p|Nanoce1779_2|590163|organism=Nannochloropsis oceanica|type=mRNA|length=2293bp|location=Sequence derived from alignment at scaffold_11:447563..449855- (Nannochloropsis oceanica) GAAAAAAATAGCATGGAGGGGGCACAAACTTCAGCAGCAGCAGCAGCAGC
AACAACAACAGCAACAGCAACAACAACCACAACAACAACAACAACAACAA
CAACAGCAGCAGCAGCAGCATCTTCATCTTCAGCAGCATCTTCAGTGGCA
GGCGGCGGACGAGGGAGCAGTCGCAGCGCCACCCCAACCCAACATAGCGC
GAGCCCGCAAGCGAGCGGGGGAGATTCGCGCTTCGATTGCAATGTGTGCC
TGTCGGAAGTTGAGGATCCAGTTGTGACGCTGTGCGGACATTTGTACTGC
TGGTCTTGTTTGTACCGCTGGTTAAACACGAACCACACGTGCCCCGTGTG
CAAGGCAGGAGTCACCAAGGAAAACGTAATTCCTCTTTACGGGCGAGGGA
GCGAGCAAGTGGACCCTCGGACGAAGACTCGGCGGGCAAGAGGCGGTGTG
GGGACAGGACAGGAAGCGACGGACGTGCCGGGACGCCCAACCGCACAGCG
GCCACAAGCTAGCACGTTTATCGGAGGCACGCCGGCTTTCATGGGAGGCC
TTCCATTCAACGCCTTCGGGACGACGAATCACTATACGGGAGGACCGGGG
GGGATGGGAGGCTCCGCTGCTGGCGGGGGCATGGTGTCGTTTTCGGCCGG
TTTCGGCTTCTTCCCATCCTTGTTCGGCCTTCAATTTCAAACTTTCGTAC
CCTCGTCCTCTTCTTCCTTCGCTTCCGGTACAACGGCAGCTGGCACACGG
GGAGCGACTGGCGGAAGTGGAAGTGGGGTAAACTCGACAGCTGACGAAGC
TCAGCAAGCCTTCCTTTCCAAACTTCTGCTCATGCTGGGCATTTTTACGC
TTGGCGTCTTGGTCTTTTGCTAACGCCCTGTGAGTAGATAATACCCTTTC
ATACACAGAGCACACAAACGGTACATGTAGATAGGAAATGTTTCGCACGA
AGAAAAATAGTGAAGGTTTCTACATGAAATGAGAGAATGGATTGGCCAGT
GTAATGGTCCACGTCAGGAACGGACGGAGTTAGACGCGCAGTCAAGAAGG
GCCCGAGATATGACGATGGAAAGGAAGAAAACACACATTGTTGTCCAGTG
AGAGAAAGTACAAATATCGTTGCCTGGATTCTACACATTGACATTTTTTT
CGAGGGCTAATGTGGAGGACGAGTTCATTGTTTCTCTAACGTGCAATTGA
ACAGTCGTCTCATCATCGCTACCACCCTCCCACGCACAGGGCACACTCTG
CGTCATCAGTCACCAACACACGCACGCTCCTCCTCTATCTGCACTACCTG
CAGAGCTCTTTCACCTTGCATGCCTCGAAATCGCCCGTCTTGCTAAGCTT
ACACCATCGACGCCAGCTAGTCTGTAGCCGCATCGTCATGGGCGGGCTGC
TAAGCAAAGGGATTGAGTACGAAGCTGATGGCATGACGGTGAGACAATGT
CTTTTCTGTGACATTGCGGCTGACAAACCAGGCCTTAGACAGACAGCTGT
GGCTTTTGAGGACGACAAGGTGCGATTTGTGTGTGTGGACGACAACGATC
ATGAGCCATCCTCTATTTCACCTCCATCTCCCATCCTTCATCCTTTCATC
TTTCATCCTCATCCTCATCCTTCACCTCCTAGTATAGGTGGTGGTCTTTG
CCCCCCTGGAGCCATGCGCCTCAGAGCACTGGCTGGTCGTACCTCGGGCT
CACCATCGTAGTGCTAGCACCTTGACGGCTAATGACTTACCTCTCCTGGT
GCACATGAAAAACATTGGCTCCCAAATACTCGAACAAAAACAACCCGGGA
AGAGCCCTCAAGACACCCGCTTCTGCTTCCATGTCGAGCCGTTTAATTCA
AGTAAGTTTTCCTGTCTACTCTTGCATTATCATCATTCGAGAATGAGGGG
GACTCCTCACATGATTCGTCGCCAGCATCTCACACACTGCTTTTTCTATT
TCTTGTAGTTGCTCACTTACACTTACACTGCCAAGTCTTGCCTTTCTTAT
CGCCCCTGTCATCGTGGAAGTACAAGGTCGGCACACAGTGGTGCTGGAGC
TATGACTCTGTGAGATTGCGTCTGGAAGAGGAATAATTCGCTCCTTAAAA
AAACGCTGGTGGCTGGTTTAGACGGTTGCTATCTCCCCTTATTTGATGGC
TGTGAGTGAACCTCCGTATACCTATTCGTGTTGATCCATCTGTTACCGGA
ACCTCCTTCTGGATGAGTGCATGGTAGGAATGAGGACAAGCAGCATATAT
AATTACATAAGTGGTTTGGATGAAGCAAGATCTCAATCTGTGT back to topCoding sequence (CDS) from alignment at scaffold_11:447563..449855- >mRNA_5736 ID=mRNA_5736|Name=jgi.p|Nanoce1779_2|590163|organism=Nannochloropsis oceanica|type=CDS|length=861bp|location=Sequence derived from alignment at scaffold_11:447563..449855- (Nannochloropsis oceanica) ATGGAGGGGGCACAAACTTCAGCAGCAGCAGCAGCAGCAACAACAACAGC AACAGCAACAACAACCACAACAACAACAACAACAACAACAACAGCAGCAG CAGCAGCATCTTCATCTTCAGCAGCATCTTCAGTGGCAGGCGGCGGACGA GGGAGCAGTCGCAGCGCCACCCCAACCCAACATAGCGCGAGCCCGCAAGC GAGCGGGGGAGATTCGCGCTTCGATTGCAATGTGTGCCTGTCGGAAGTTG AGGATCCAGTTGTGACGCTGTGCGGACATTTGTACTGCTGGTCTTGTTTG TACCGCTGGTTAAACACGAACCACACGTGCCCCGTGTGCAAGGCAGGAGT CACCAAGGAAAACGTAATTCCTCTTTACGGGCGAGGGAGCGAGCAAGTGG ACCCTCGGACGAAGACTCGGCGGGCAAGAGGCGGTGTGGGGACAGGACAG GAAGCGACGGACGTGCCGGGACGCCCAACCGCACAGCGGCCACAAGCTAG CACGTTTATCGGAGGCACGCCGGCTTTCATGGGAGGCCTTCCATTCAACG CCTTCGGGACGACGAATCACTATACGGGAGGACCGGGGGGGATGGGAGGC TCCGCTGCTGGCGGGGGCATGGTGTCGTTTTCGGCCGGTTTCGGCTTCTT CCCATCCTTGTTCGGCCTTCAATTTCAAACTTTCGTACCCTCGTCCTCTT CTTCCTTCGCTTCCGGTACAACGGCAGCTGGCACACGGGGAGCGACTGGC GGAAGTGGAAGTGGGGTAAACTCGACAGCTGACGAAGCTCAGCAAGCCTT CCTTTCCAAACTTCTGCTCATGCTGGGCATTTTTACGCTTGGCGTCTTGG TCTTTTGCTAA back to top
|