jgi.p|Nanoce1779_2|590163, mRNA_5736 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|590163
Unique NamemRNA_5736
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2068
Alignment locationscaffold_11:447563..449855 -

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Properties
Property NameValue
TranscriptId590249
TrackFilteredModels2
ProteinId590163
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:447563..449855 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590163gene_5736Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590163mRNA_5736-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5736CDS_5736Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5736 ID=mRNA_5736|Name=jgi.p|Nanoce1779_2|590163|organism=Nannochloropsis oceanica|type=mRNA|length=2068bp
GAAAAAAATAGCATGGAGGGGGCACAAACTTCAGCAGCAGCAGCAGCAGC
AACAACAACAGCAACAGCAACAACAACCACAACAACAACAACAACAACAA
CAACAGCAGCAGCAGCAGCATCTTCATCTTCAGCAGCATCTTCAGTGGCA
GGCGGCGGACGAGGGAGCAGTCGCAGCGCCACCCCAACCCAACATAGCGC
GAGCCCGCAAGCGAGCGGGGGAGATTCGCGCTTCGATTGCAATGTGTGCC
TGTCGGAAGTTGAGGATCCAGTTGTGACGCTGTGCGGACATTTGTACTGC
TGGTCTTGTTTGTACCGCTGGTTAAACACGAACCACACGTGCCCCGTGTG
CAAGGCAGGAGTCACCAAGGAAAACGTAATTCCTCTTTACGGGCGAGGGA
GCGAGCAAGTGGACCCTCGGACGAAGACTCGGCGGGCAAGAGGCGGTGTG
GGGACAGGACAGGAAGCGACGGACGTGCCGGGACGCCCAACCGCACAGCG
GCCACAAGCTAGCACGTTTATCGGAGGCACGCCGGCTTTCATGGGAGGCC
TTCCATTCAACGCCTTCGGGACGACGAATCACTATACGGGAGGACCGGGG
GGGATGGGAGGCTCCGCTGCTGGCGGGGGCATGGTGTCGTTTTCGGCCGG
TTTCGGCTTCTTCCCATCCTTGTTCGGCCTTCAATTTCAAACTTTCGTAC
CCTCGTCCTCTTCTTCCTTCGCTTCCGGTACAACGGCAGCTGGCACACGG
GGAGCGACTGGCGGAAGTGGAAGTGGGGTAAACTCGACAGCTGACGAAGC
TCAGCAAGCCTTCCTTTCCAAACTTCTGCTCATGCTGGGCATTTTTACGC
TTGGCGTCTTGGTCTTTTGCTAACGCCCTGTGAGTAGATAATACCCTTTC
ATACACAGAGCACACAAACGGTACATGTAGATAGGAAATGTTTCGCACGA
AGAAAAATAGTGAAGGTTTCTACATGAAATGAGAGAATGGATTGGCCAGT
GTAATGGTCCACGTCAGGAACGGACGGAGTTAGACGCGCAGTCAAGAAGG
GCCCGAGATATGACGATGGAAAGGAAGAAAACACACATTGTTGTCCAGTG
AGAGAAAGTACAAATATCGTTGCCTGGATTCTACACATTGACATTTTTTT
CGAGGGCTAATGTGGAGGACGAGTTCATTGTTTCTCTAACGTGCAATTGA
ACAGTCGTCTCATCATCGCTACCACCCTCCCACGCACAGGGCACACTCTG
CGTCATCAGTCACCAACACACGCACGCTCCTCCTCTATCTGCACTACCTG
CAGAGCTCTTTCACCTTGCATGCCTCGAAATCGCCCGTCTTGCTAAGCTT
ACACCATCGACGCCAGCTAGTCTGTAGCCGCATCGTCATGGGCGGGCTGC
TAAGCAAAGGGATTGAGTACGAAGCTGATGGCATGACGGTGAGACAATGT
CTTTTCTGTGACATTGCGGCTGACAAACCAGGCCTTAGACAGACAGCTGT
GGCTTTTGAGGACGACAAGGTGGTGGTCTTTGCCCCCCTGGAGCCATGCG
CCTCAGAGCACTGGCTGGTCGTACCTCGGGCTCACCATCGTAGTGCTAGC
ACCTTGACGGCTAATGACTTACCTCTCCTGGTGCACATGAAAAACATTGG
CTCCCAAATACTCGAACAAAAACAACCCGGGAAGAGCCCTCAAGACACCC
GCTTCTGCTTCCATGTCGAGCCGTTTAATTCAATTGCTCACTTACACTTA
CACTGCCAAGTCTTGCCTTTCTTATCGCCCCTGTCATCGTGGAAGTACAA
GGTCGGCACACAGTGGTGCTGGAGCTATGACTCTGTGAGATTGCGTCTGG
AAGAGGAATAATTCGCTCCTTAAAAAAACGCTGGTGGCTGGTTTAGACGG
TTGCTATCTCCCCTTATTTGATGGCTGTGAGTGAACCTCCGTATACCTAT
TCGTGTTGATCCATCTGTTACCGGAACCTCCTTCTGGATGAGTGCATGGT
AGGAATGAGGACAAGCAGCATATATAATTACATAAGTGGTTTGGATGAAG
CAAGATCTCAATCTGTGT
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protein sequence of jgi.p|Nanoce1779_2|590163

>mRNA_5736-protein ID=mRNA_5736-protein|Name=jgi.p|Nanoce1779_2|590163|organism=Nannochloropsis oceanica|type=polypeptide|length=287bp
MEGAQTSAAAAAATTTATATTTTTTTTTTTTAAAAASSSSAASSVAGGGR
GSSRSATPTQHSASPQASGGDSRFDCNVCLSEVEDPVVTLCGHLYCWSCL
YRWLNTNHTCPVCKAGVTKENVIPLYGRGSEQVDPRTKTRRARGGVGTGQ
EATDVPGRPTAQRPQASTFIGGTPAFMGGLPFNAFGTTNHYTGGPGGMGG
SAAGGGMVSFSAGFGFFPSLFGLQFQTFVPSSSSSFASGTTAAGTRGATG
GSGSGVNSTADEAQQAFLSKLLLMLGIFTLGVLVFC*
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mRNA from alignment at scaffold_11:447563..449855-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5736 ID=mRNA_5736|Name=jgi.p|Nanoce1779_2|590163|organism=Nannochloropsis oceanica|type=mRNA|length=2293bp|location=Sequence derived from alignment at scaffold_11:447563..449855- (Nannochloropsis oceanica)
GAAAAAAATAGCATGGAGGGGGCACAAACTTCAGCAGCAGCAGCAGCAGC AACAACAACAGCAACAGCAACAACAACCACAACAACAACAACAACAACAA CAACAGCAGCAGCAGCAGCATCTTCATCTTCAGCAGCATCTTCAGTGGCA GGCGGCGGACGAGGGAGCAGTCGCAGCGCCACCCCAACCCAACATAGCGC GAGCCCGCAAGCGAGCGGGGGAGATTCGCGCTTCGATTGCAATGTGTGCC TGTCGGAAGTTGAGGATCCAGTTGTGACGCTGTGCGGACATTTGTACTGC TGGTCTTGTTTGTACCGCTGGTTAAACACGAACCACACGTGCCCCGTGTG CAAGGCAGGAGTCACCAAGGAAAACGTAATTCCTCTTTACGGGCGAGGGA GCGAGCAAGTGGACCCTCGGACGAAGACTCGGCGGGCAAGAGGCGGTGTG GGGACAGGACAGGAAGCGACGGACGTGCCGGGACGCCCAACCGCACAGCG GCCACAAGCTAGCACGTTTATCGGAGGCACGCCGGCTTTCATGGGAGGCC TTCCATTCAACGCCTTCGGGACGACGAATCACTATACGGGAGGACCGGGG GGGATGGGAGGCTCCGCTGCTGGCGGGGGCATGGTGTCGTTTTCGGCCGG TTTCGGCTTCTTCCCATCCTTGTTCGGCCTTCAATTTCAAACTTTCGTAC CCTCGTCCTCTTCTTCCTTCGCTTCCGGTACAACGGCAGCTGGCACACGG GGAGCGACTGGCGGAAGTGGAAGTGGGGTAAACTCGACAGCTGACGAAGC TCAGCAAGCCTTCCTTTCCAAACTTCTGCTCATGCTGGGCATTTTTACGC TTGGCGTCTTGGTCTTTTGCTAACGCCCTGTGAGTAGATAATACCCTTTC ATACACAGAGCACACAAACGGTACATGTAGATAGGAAATGTTTCGCACGA AGAAAAATAGTGAAGGTTTCTACATGAAATGAGAGAATGGATTGGCCAGT GTAATGGTCCACGTCAGGAACGGACGGAGTTAGACGCGCAGTCAAGAAGG GCCCGAGATATGACGATGGAAAGGAAGAAAACACACATTGTTGTCCAGTG AGAGAAAGTACAAATATCGTTGCCTGGATTCTACACATTGACATTTTTTT CGAGGGCTAATGTGGAGGACGAGTTCATTGTTTCTCTAACGTGCAATTGA ACAGTCGTCTCATCATCGCTACCACCCTCCCACGCACAGGGCACACTCTG CGTCATCAGTCACCAACACACGCACGCTCCTCCTCTATCTGCACTACCTG CAGAGCTCTTTCACCTTGCATGCCTCGAAATCGCCCGTCTTGCTAAGCTT ACACCATCGACGCCAGCTAGTCTGTAGCCGCATCGTCATGGGCGGGCTGC TAAGCAAAGGGATTGAGTACGAAGCTGATGGCATGACGGTGAGACAATGT CTTTTCTGTGACATTGCGGCTGACAAACCAGGCCTTAGACAGACAGCTGT GGCTTTTGAGGACGACAAGGTGCGATTTGTGTGTGTGGACGACAACGATC ATGAGCCATCCTCTATTTCACCTCCATCTCCCATCCTTCATCCTTTCATC TTTCATCCTCATCCTCATCCTTCACCTCCTAGTATAGGTGGTGGTCTTTG CCCCCCTGGAGCCATGCGCCTCAGAGCACTGGCTGGTCGTACCTCGGGCT CACCATCGTAGTGCTAGCACCTTGACGGCTAATGACTTACCTCTCCTGGT GCACATGAAAAACATTGGCTCCCAAATACTCGAACAAAAACAACCCGGGA AGAGCCCTCAAGACACCCGCTTCTGCTTCCATGTCGAGCCGTTTAATTCA AGTAAGTTTTCCTGTCTACTCTTGCATTATCATCATTCGAGAATGAGGGG GACTCCTCACATGATTCGTCGCCAGCATCTCACACACTGCTTTTTCTATT TCTTGTAGTTGCTCACTTACACTTACACTGCCAAGTCTTGCCTTTCTTAT CGCCCCTGTCATCGTGGAAGTACAAGGTCGGCACACAGTGGTGCTGGAGC TATGACTCTGTGAGATTGCGTCTGGAAGAGGAATAATTCGCTCCTTAAAA AAACGCTGGTGGCTGGTTTAGACGGTTGCTATCTCCCCTTATTTGATGGC TGTGAGTGAACCTCCGTATACCTATTCGTGTTGATCCATCTGTTACCGGA ACCTCCTTCTGGATGAGTGCATGGTAGGAATGAGGACAAGCAGCATATAT AATTACATAAGTGGTTTGGATGAAGCAAGATCTCAATCTGTGT
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Coding sequence (CDS) from alignment at scaffold_11:447563..449855-

>mRNA_5736 ID=mRNA_5736|Name=jgi.p|Nanoce1779_2|590163|organism=Nannochloropsis oceanica|type=CDS|length=861bp|location=Sequence derived from alignment at scaffold_11:447563..449855- (Nannochloropsis oceanica)
ATGGAGGGGGCACAAACTTCAGCAGCAGCAGCAGCAGCAACAACAACAGC
AACAGCAACAACAACCACAACAACAACAACAACAACAACAACAGCAGCAG
CAGCAGCATCTTCATCTTCAGCAGCATCTTCAGTGGCAGGCGGCGGACGA
GGGAGCAGTCGCAGCGCCACCCCAACCCAACATAGCGCGAGCCCGCAAGC
GAGCGGGGGAGATTCGCGCTTCGATTGCAATGTGTGCCTGTCGGAAGTTG
AGGATCCAGTTGTGACGCTGTGCGGACATTTGTACTGCTGGTCTTGTTTG
TACCGCTGGTTAAACACGAACCACACGTGCCCCGTGTGCAAGGCAGGAGT
CACCAAGGAAAACGTAATTCCTCTTTACGGGCGAGGGAGCGAGCAAGTGG
ACCCTCGGACGAAGACTCGGCGGGCAAGAGGCGGTGTGGGGACAGGACAG
GAAGCGACGGACGTGCCGGGACGCCCAACCGCACAGCGGCCACAAGCTAG
CACGTTTATCGGAGGCACGCCGGCTTTCATGGGAGGCCTTCCATTCAACG
CCTTCGGGACGACGAATCACTATACGGGAGGACCGGGGGGGATGGGAGGC
TCCGCTGCTGGCGGGGGCATGGTGTCGTTTTCGGCCGGTTTCGGCTTCTT
CCCATCCTTGTTCGGCCTTCAATTTCAAACTTTCGTACCCTCGTCCTCTT
CTTCCTTCGCTTCCGGTACAACGGCAGCTGGCACACGGGGAGCGACTGGC
GGAAGTGGAAGTGGGGTAAACTCGACAGCTGACGAAGCTCAGCAAGCCTT
CCTTTCCAAACTTCTGCTCATGCTGGGCATTTTTACGCTTGGCGTCTTGG
TCTTTTGCTAA
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Synonyms
Publications