jgi.p|Nanoce1779_2|590158, mRNA_5733 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|590158
Unique NamemRNA_5733
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1181
Alignment locationscaffold_11:444234..445922 -

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Properties
Property NameValue
TranscriptId590244
TrackFilteredModels2
ProteinId590158
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:444234..445922 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590158gene_5733Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590158mRNA_5733-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5733CDS_5733Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5733 ID=mRNA_5733|Name=jgi.p|Nanoce1779_2|590158|organism=Nannochloropsis oceanica|type=mRNA|length=1181bp
ACAGCTACGGAAGGAGAGTGAGGAGAGGCAGGCTTGGGAAAGGTGCGGGT
TGTTGTCGGCGCGCGCGTCCACCAGACACCTTCCCCCCACTCTCCCGTCG
AAGCCTAAGCATCACCATTCGGGCACGCGGTAGCGGCAGTGCGGGCGGCG
TTGGTGGTGGCACCACCGGGGGCAGCAGCATTAGCAACGGCGGCTCTAGC
CCTCACGCGCTCTTTTCAACATTTTCCACTACGGCCGCCGCCGCGGCAAC
TTTCCCAAACCCAATGGGGGATTGGGAGGAGCTCAAACGCAAAGTGCGCG
GCATAGAGAGCAAGCTCGAGGAAAAATGCCAGGCACACGCCTTTCTAGCG
CAGCCCATGAATTCGGACTTGCTTTATGATGAAGAGAATCCACTGCTGGA
GAGCTCAGAAGAGCAATGTCTGGCCACTGAGATTGAGAATCTTCTGGCGG
CGCTTTCGGAATGCAACGACGCCATGGGTCGATTGCTCGCGCATGGGACG
CGTACCTCGAGCTCGGCCTTGTTGCAGCGATACAGGGAAATTTTCAACTA
CTACACGAGTGAGTTCCACAAGACACAGGTAGCCCTTCAGAGGAAGCGCG
AGAGCGCTGAGCTCCTCAAGAGTGGAGCCGGTCGGGGGGTTACCAAGAAA
TTAGGAGAATGGGGCAACCCTCAGATGGATCAATTACTGCGGGAGCGCAA
TGCCATTCACAGCTCTCTCCGCAGTGTCGGTAGCATCCTGAGCCAGGCCA
TAGAGACGAAGGATGGGTTGCGGGCGCAACGCCAGGGGTTGTCCGGGGCC
AATACGGGTCTCGCAGGGCTTGCCACCAACTTGCCCTCGATCAGTCGTGT
GGTGGACGCCATCCACCGGAAAAAGACGCGAGACAATGCCATCATCGGCC
TCATTATTGCTAGCTGTCTTTGCTTTACGATATGGTACCTTGTCTGATTC
GAAACATACATGTGCACTGTCGCTCAAAAGAAGACAAGGAAAATCGAAAT
AGGCATGAAGTACATATCGTCTACTTTCATGGTCAGTGCACTTATTTCTG
CTCACCCTTGCTTCTCCTTTGCGTTGTACTGCACGGCTTGGGTGGGGAGG
CTAGTGGGGTCTCGAGGCTCGAGAAAAAGTCTGTCAAAGTCGCTAGAAAA
ACTCGGACGAGGAATAGGGGATGAATACGCA
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protein sequence of jgi.p|Nanoce1779_2|590158

>mRNA_5733-protein ID=mRNA_5733-protein|Name=jgi.p|Nanoce1779_2|590158|organism=Nannochloropsis oceanica|type=polypeptide|length=228bp
MGDWEELKRKVRGIESKLEEKCQAHAFLAQPMNSDLLYDEENPLLESSEE
QCLATEIENLLAALSECNDAMGRLLAHGTRTSSSALLQRYREIFNYYTSE
FHKTQVALQRKRESAELLKSGAGRGVTKKLGEWGNPQMDQLLRERNAIHS
SLRSVGSILSQAIETKDGLRAQRQGLSGANTGLAGLATNLPSISRVVDAI
HRKKTRDNAIIGLIIASCLCFTIWYLV*
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mRNA from alignment at scaffold_11:444234..445922-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5733 ID=mRNA_5733|Name=jgi.p|Nanoce1779_2|590158|organism=Nannochloropsis oceanica|type=mRNA|length=1689bp|location=Sequence derived from alignment at scaffold_11:444234..445922- (Nannochloropsis oceanica)
ACAGCTACGGAAGGAGAGTGAGGAGAGGCAGGCTTGGGAAAGGTGCGGGT
TGTTGTCGGCGCGCGCGTCCACCAGACACCTTCCCCCCACTCTCCCGTCG
AAGCCTAAGCATCACCATTCGGGCACGCGGTAGCGGCAGTGCGGGCGGCG
TTGGTGGTGGCACCACCGGGGGCAGCAGCATTAGCAACGGCGGCTCTAGC
CCTCACGCGCTCTTTTCAACATTTTCCACTACGGCCGCCGCCGCGGCAAC
TTTCCCAAACCCAATGGGGGATTGGGAGGAGCTCAAACGCAAAGTGCGCG
GCATAGAGAGCAAGCTCGAGGTACGTGGCGAGTGTGCGGGGACATAAATA
CGGAAAGACCACCCGCATCATGAGTGGGTGAAAATGGATGGGGCCGTGCA
GGCCTAGTTTGACTATCCTTCAGGAGCGGCTGTGCAGTTGTGGATTGAGA
GAGAAAGCATGGCCAAGATGGGATCGTATGCAACGAGCTCGCTTACTTCC
ACGATGACACAATGACACGCTACCTTGTCGCTAATATACTCGTGGTAATC
CTTCCGTCTTCGACCATTGCAGGAAAAATGCCAGGCACACGCCTTTCTAG
CGCAGCCCATGAATTCGGACTTGCTTTATGATGAAGGTGAGTCAAGAGGA
GTGGCAAGTTTATGCATAGAAATATGAGGAAACACGCTAGTCTACATGGT
GTATGGCGCAGATCCCCTCGTCACAAGCTCAGATCCCTCTTCACCTTTTC
GCGCAGAGAATCCACTGCTGGAGAGCTCAGAAGAGCAATGTCTGGCCACT
GAGATTGAGAATCTTCTGGCGGCGGTAAGTCCGACGATTGGTGTTGTTTA
GCCAGGATATGGGGAAGTGTTCCAAGCGTTTGCGACTGGGGGGCTCTTAA
ACACCCGTTTTGGTACCATGCCCTCAACGTTCACCGCTACCCCCCTCCTT
CCGAACACAGCTTTCGGAATGCAACGACGCCATGGGTCGATTGCTCGCGC
ATGGGACGCGTACCTCGAGCTCGGCCTTGTTGCAGCGATACAGGGAAATT
TTCAACTACTACACGAGTGAGTTCCACAAGACACAGGTAGCCCTTCAGAG
GAAGCGCGAGAGCGCTGAGCTCCTCAAGAGTGGAGCCGGTCGGGGGGTTA
CCAAGAAATTAGGAGAATGGGGCAACCCTCAGATGGATCAATTACTGCGG
GAGCGCAATGCCATTCACAGCTCTCTCCGCAGTGTCGGTAGCATCCTGAG
CCAGGCCATAGAGACGAAGGATGGGTTGCGGGCGCAACGCCAGGGGTTGT
CCGGGGCCAATACGGGTCTCGCAGGGCTTGCCACCAACTTGCCCTCGATC
AGTCGTGTGGTGGACGCCATCCACCGGAAAAAGACGCGAGACAATGCCAT
CATCGGCCTCATTATTGCTAGCTGTCTTTGCTTTACGATATGGTACCTTG
TCTGATTCGAAACATACATGTGCACTGTCGCTCAAAAGAAGACAAGGAAA
ATCGAAATAGGCATGAAGTACATATCGTCTACTTTCATGGTCAGTGCACT
TATTTCTGCTCACCCTTGCTTCTCCTTTGCGTTGTACTGCACGGCTTGGG
TGGGGAGGCTAGTGGGGTCTCGAGGCTCGAGAAAAAGTCTGTCAAAGTCG
CTAGAAAAACTCGGACGAGGAATAGGGGATGAATACGCA
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Coding sequence (CDS) from alignment at scaffold_11:444234..445922-

>mRNA_5733 ID=mRNA_5733|Name=jgi.p|Nanoce1779_2|590158|organism=Nannochloropsis oceanica|type=CDS|length=2736bp|location=Sequence derived from alignment at scaffold_11:444234..445922- (Nannochloropsis oceanica)
CTTTCGGAATGCAACGACGCCATGGGTCGATTGCTCGCGCATGGGACGCG
TACCTCGAGCTCGGCCTTGTTGCAGCGATACAGGGAAATTTTCAACTACT
ACACGAGTGAGTTCCACAAGACACAGGTAGCCCTTCAGAGGAAGCGCGAG
AGCGCTGAGCTCCTCAAGAGTGGAGCCGGTCGGGGGGTTACCAAGAAATT
AGGAGAATGGGGCAACCCTCAGATGGATCAATTACTGCGGGAGCGCAATG
CCATTCACAGCTCTCTCCGCAGTGTCGGTAGCATCCTGAGCCAGGCCATA
GAGACGAAGGATGGGTTGCGGGCGCAACGCCAGGGGTTGTCCGGGGCCAA
TACGGGTCTCGCAGGGCTTGCCACCAACTTGCCCTCGATCAGTCGTGTGG
TGGACGCCATCCACCGGAAAAAGACGCGAGACAATGCCATCATCGGCCTC
ATTATTGCTAGCTGTCTTTGCTTTACGATATGGTACCTTGTCTGAAGAAT
CCACTGCTGGAGAGCTCAGAAGAGCAATGTCTGGCCACTGAGATTGAGAA
TCTTCTGGCGGCGGAAAAATGCCAGGCACACGCCTTTCTAGCGCAGCCCA
TGAATTCGGACTTGCTTTATGATGAAGATGGGGGATTGGGAGGAGCTCAA
ACGCAAAGTGCGCGGCATAGAGAGCAAGCTCGAGCTTTCGGAATGCAACG
ACGCCATGGGTCGATTGCTCGCGCATGGGACGCGTACCTCGAGCTCGGCC
TTGTTGCAGCGATACAGGGAAATTTTCAACTACTACACGAGTGAGTTCCA
CAAGACACAGGTAGCCCTTCAGAGGAAGCGCGAGAGCGCTGAGCTCCTCA
AGAGTGGAGCCGGTCGGGGGGTTACCAAGAAATTAGGAGAATGGGGCAAC
CCTCAGATGGATCAATTACTGCGGGAGCGCAATGCCATTCACAGCTCTCT
CCGCAGTGTCGGTAGCATCCTGAGCCAGGCCATAGAGACGAAGGATGGGT
TGCGGGCGCAACGCCAGGGGTTGTCCGGGGCCAATACGGGTCTCGCAGGG
CTTGCCACCAACTTGCCCTCGATCAGTCGTGTGGTGGACGCCATCCACCG
GAAAAAGACGCGAGACAATGCCATCATCGGCCTCATTATTGCTAGCTGTC
TTTGCTTTACGATATGGTACCTTGTCTGAAGAATCCACTGCTGGAGAGCT
CAGAAGAGCAATGTCTGGCCACTGAGATTGAGAATCTTCTGGCGGCGGAA
AAATGCCAGGCACACGCCTTTCTAGCGCAGCCCATGAATTCGGACTTGCT
TTATGATGAAGATGGGGGATTGGGAGGAGCTCAAACGCAAAGTGCGCGGC
ATAGAGAGCAAGCTCGAGCTTTCGGAATGCAACGACGCCATGGGTCGATT
GCTCGCGCATGGGACGCGTACCTCGAGCTCGGCCTTGTTGCAGCGATACA
GGGAAATTTTCAACTACTACACGAGTGAGTTCCACAAGACACAGGTAGCC
CTTCAGAGGAAGCGCGAGAGCGCTGAGCTCCTCAAGAGTGGAGCCGGTCG
GGGGGTTACCAAGAAATTAGGAGAATGGGGCAACCCTCAGATGGATCAAT
TACTGCGGGAGCGCAATGCCATTCACAGCTCTCTCCGCAGTGTCGGTAGC
ATCCTGAGCCAGGCCATAGAGACGAAGGATGGGTTGCGGGCGCAACGCCA
GGGGTTGTCCGGGGCCAATACGGGTCTCGCAGGGCTTGCCACCAACTTGC
CCTCGATCAGTCGTGTGGTGGACGCCATCCACCGGAAAAAGACGCGAGAC
AATGCCATCATCGGCCTCATTATTGCTAGCTGTCTTTGCTTTACGATATG
GTACCTTGTCTGAAGAATCCACTGCTGGAGAGCTCAGAAGAGCAATGTCT
GGCCACTGAGATTGAGAATCTTCTGGCGGCGGAAAAATGCCAGGCACACG
CCTTTCTAGCGCAGCCCATGAATTCGGACTTGCTTTATGATGAAGATGGG
GGATTGGGAGGAGCTCAAACGCAAAGTGCGCGGCATAGAGAGCAAGCTCG
AGCTTTCGGAATGCAACGACGCCATGGGTCGATTGCTCGCGCATGGGACG
CGTACCTCGAGCTCGGCCTTGTTGCAGCGATACAGGGAAATTTTCAACTA
CTACACGAGTGAGTTCCACAAGACACAGGTAGCCCTTCAGAGGAAGCGCG
AGAGCGCTGAGCTCCTCAAGAGTGGAGCCGGTCGGGGGGTTACCAAGAAA
TTAGGAGAATGGGGCAACCCTCAGATGGATCAATTACTGCGGGAGCGCAA
TGCCATTCACAGCTCTCTCCGCAGTGTCGGTAGCATCCTGAGCCAGGCCA
TAGAGACGAAGGATGGGTTGCGGGCGCAACGCCAGGGGTTGTCCGGGGCC
AATACGGGTCTCGCAGGGCTTGCCACCAACTTGCCCTCGATCAGTCGTGT
GGTGGACGCCATCCACCGGAAAAAGACGCGAGACAATGCCATCATCGGCC
TCATTATTGCTAGCTGTCTTTGCTTTACGATATGGTACCTTGTCTGAAGA
ATCCACTGCTGGAGAGCTCAGAAGAGCAATGTCTGGCCACTGAGATTGAG
AATCTTCTGGCGGCGGAAAAATGCCAGGCACACGCCTTTCTAGCGCAGCC
CATGAATTCGGACTTGCTTTATGATGAAGATGGGGGATTGGGAGGAGCTC
AAACGCAAAGTGCGCGGCATAGAGAGCAAGCTCGAG
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Synonyms
Publications