jgi.p|Nanoce1779_2|590142, mRNA_5731 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|590142
Unique Name	mRNA_5731
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1180
Alignment location	scaffold_11:438417..439989 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	590228
Track	FilteredModels2
ProteinId	590142

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_11	supercontig	scaffold_11:438417..439989 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|590142	gene_5731	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|590142	mRNA_5731-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5731	CDS_5731	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_11:438417..439989+
coding sequence from alignment at scaffold_11:438417..439989+

mRNA sequence

>mRNA_5731 ID=mRNA_5731|Name=jgi.p|Nanoce1779_2|590142|organism=Nannochloropsis oceanica|type=mRNA|length=1180bp
AGACCTTTTATCCCTAATCATACCCAACAGGACAGGAAGACCCCACGAAG
GACTCACCGGCTGTGCTGGAAAGCTGCAGTCTCCAGCAAGCGCGTAACTA
GCCAAGCTTACTCAAGGTCTTGCTTCGCTCATTCATGGAGCCTCAGCCCA
CTATCTCTCGGTCCACGCGTCGCAAGACAATTGCCCCTCTTCCCTGTGGG
CTGGCTCTGCTCTTCATCGTTTGTGGCTGTTGCTTGCCCCTTAGTCAGGC
CTTCCTTCCCCCACATTTCAGCCAGGCGGGCAGCCGGACTCTATCCTTGC
TTGGTCTCCGCCAACCCTCCTCATCACGCTCGTCGTCACTACGACTGGGG
AGGAGGCTAGGTATTCCCCTGTACAGCATGTTGGACAAGGAGGGGAACAA
ACGCCGTCGTCGACGACGCCAAGGCAACGGGAATGAGAGCAATGAAAAGG
AAGAGGAAGAGGAGTATCGAGCCATGAGACCAGCAGCCCTGGACCGGGTA
CGCCCTCCACCCCCGCCCCGGATCCGCCCAGAGGTGGGCAAGAACCGGCT
ACCATTTGGCGTCTCATGGATCCCCCAGGGCCTAAGTGCGGCCCTACTCA
TGGGCACATTTGTTTTGGGTGTGGGTACGGGTGTGACAGTGGACTCGGCC
ATCAACACCAACCCCAAGGACCTGGCATCTCGCGATGCCATAGATAAGAA
CGCCCCTAATCCCAAATTCTGCCAGCGCTACGGTGCCAGCACATTAGTGC
TGGACAACCGCATCTTCGTCTCCTTCAACCCTTTCGACGTTTACGTAACG
CAGGCTGACGTCAAGCCCGGCTGCGTATTGCGTGCCGCAAATGTGGTACA
GGCCCTGCAAGGCCGGGGGCTCCTCACGGACGAAGAGGTGAATGTCTGTA
AGAACGGCAATAATACCTGGGCGTACGTTGGTGACATCAATGACAAGCCC
CAGCTCTCCTGTGTGTACCAATCCGACGACGCACAGAATGAGTTTTTGGA
GAACCCCAAGCTGGGCGTAGGAGAAGATGTGTACGACAAATAGACAATGA
AAGTGGAAAAAAAATTAAATCCTTGCTGTAAATACTGGTGAAGAAAGACT
CATGAAGGGTTAGAAGCGTGCGTGATCCCCGCTCAGTAAAAATGTTGAAA
AACGAAGAAGTAACAGTAACATTGCGAAAA

protein sequence of jgi.p|Nanoce1779_2|590142

>mRNA_5731-protein ID=mRNA_5731-protein|Name=jgi.p|Nanoce1779_2|590142|organism=Nannochloropsis oceanica|type=polypeptide|length=303bp
MEPQPTISRSTRRKTIAPLPCGLALLFIVCGCCLPLSQAFLPPHFSQAGS
RTLSLLGLRQPSSSRSSSLRLGRRLGIPLYSMLDKEGNKRRRRRRQGNGN
ESNEKEEEEEYRAMRPAALDRVRPPPPPRIRPEVGKNRLPFGVSWIPQGL
SAALLMGTFVLGVGTGVTVDSAINTNPKDLASRDAIDKNAPNPKFCQRYG
ASTLVLDNRIFVSFNPFDVYVTQADVKPGCVLRAANVVQALQGRGLLTDE
EVNVCKNGNNTWAYVGDINDKPQLSCVYQSDDAQNEFLENPKLGVGEDVY
DK*

mRNA from alignment at scaffold_11:438417..439989+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5731 ID=mRNA_5731|Name=jgi.p|Nanoce1779_2|590142|organism=Nannochloropsis oceanica|type=mRNA|length=1573bp|location=Sequence derived from alignment at scaffold_11:438417..439989+ (Nannochloropsis oceanica)
AGACCTTTTATCCCTAATCATACCCAACAGGACAGGAAGACCCCACGAAG
GACTCACCGGCTGTGCTGGAAAGCTGCAGTCTCCAGCAAGCGCGTAACTA
GCCAAGCTTACTCAAGGTCTTGCTTCGCTCATTCATGGAGCCTCAGCCCA
CTATCTCTCGGTCCACGCGTCGCAAGACAATTGCCCCTCTTCCCTGTGGG
CTGGCTCTGCTCTTCATCGTTTGTGGCTGTTGCTTGCCCCTTAGTCAGGC
CTTCCTTCCCCCACATTTCAGCCAGGCGGGCAGCCGGACTCTATCCTTGC
TTGGTCTCCGCCAACCCTCCTCATCACGCTCGTCGTCACTACGACTGGGG
AGGAGGCTAGGTATTCCCCTGTACAGCATGTTGGACAAGGAGGGGAACAA
ACGCCGTCGTCGACGACGCCAAGGCAACGGGAATGAGAGCAATGAAAAGG
AAGAGGAAGAGGAGTATCGAGCCATGAGACCAGCAGCCCTGGACCGGGTA
CGCCCTCCACCCCCGCCCCGGATCCGCCCAGGTAATTAATTAAGTGCAAG
ACTATTTAGGCGGGAGCGGATGCGCGGGTGTGGCTTGTGGGTACCAAACT
GATAGTAACACTACAAGAGGGAGGCCGAATTCATGTGCCCAGCATCTCAC
CGCCACTACCACAAAACACACACGCGATAGAGGTGGGCAAGAACCGGCTA
CCATTTGGCGTCTCATGGATCCCCCAGGGCCTAAGTGCGGCCCTACTCAT
GGGCACATTTGTTTTGGGTGTGGGTACGGGTGTGACAGTGGACTCGGCCA
TCAACACCAACCCCAAGGACCTGGCATCTCGCGATGCCATAGATAAGAAC
GCCCCTAATCCCAAATTCTGCCAGGTGAGTTGCGCGTTGCTCGTCAGTCT
TGAACCACCCTCTCGCCTGTCTTGTTCACTTGTCGCCCCATTCATCTCCT
CGGGTCATACCCTCCTTACCTCCTTCACCCAGCGCTACGGTGCCAGCACA
TTAGTGCTGGACAACCGCATCTTCGTCTCCTTCAACCCTTTCGACGTTTA
CGTAACGCAGGCTGACGTCAAGCCCGGCTGCGTATTGCGTGCCGCAAATG
TGGTACAGGCCCTGCAAGGCCGGGGGCTCCTCACGGACGAAGAGGTGAGG
GCTTAAAGAGAAGAAAAAGAAAAGAGGAAGCGAAGTGGGAGAAGCTGGGA
GACGTAAGGGGAGTGCGGCTGCTTAGGGTCTACAAAGCAGTAAATCTCAC
CGAGTTTTCCTCCTCCTTTTTGCTTCACAGGTGAATGTCTGTAAGAACGG
CAATAATACCTGGGCGTACGTTGGTGACATCAATGACAAGCCCCAGCTCT
CCTGTGTGTACCAATCCGACGACGCACAGAATGAGTTTTTGGAGAACCCC
AAGCTGGGCGTAGGAGAAGATGTGTACGACAAATAGACAATGAAAGTGGA
AAAAAAATTAAATCCTTGCTGTAAATACTGGTGAAGAAAGACTCATGAAG
GGTTAGAAGCGTGCGTGATCCCCGCTCAGTAAAAATGTTGAAAAACGAAG
AAGTAACAGTAACATTGCGAAAA

Coding sequence (CDS) from alignment at scaffold_11:438417..439989+

>mRNA_5731 ID=mRNA_5731|Name=jgi.p|Nanoce1779_2|590142|organism=Nannochloropsis oceanica|type=CDS|length=3636bp|location=Sequence derived from alignment at scaffold_11:438417..439989+ (Nannochloropsis oceanica)
ATGGAGCCTCAGCCCACTATCTCTCGGTCCACGCGTCGCAAGACAATTGC
CCCTCTTCCCTGTGGGCTGGCTCTGCTCTTCATCGTTTGTGGCTGTTGCT
TGCCCCTTAGTCAGGCCTTCCTTCCCCCACATTTCAGCCAGGCGGGCAGC
CGGACTCTATCCTTGCTTGGTCTCCGCCAACCCTCCTCATCACGCTCGTC
GTCACTACGACTGGGGAGGAGGCTAGGTATTCCCCTGTACAGCATGTTGG
ACAAGGAGGGGAACAAACGCCGTCGTCGACGACGCCAAGGCAACGGGAAT
GAGAGCAATGAAAAGGAAGAGGAAGAGGAGTATCGAGCCATGAGACCAGC
AGCCCTGGACCGGGTACGCCCTCCACCCCCGCCCCGGATCCGCCCAGAGG
TGGGCAAGAACCGGCTACCATTTGGCGTCTCATGGATCCCCCAGGGCCTA
AGTGCGGCCCTACTCATGGGCACATTTGTTTTGGGTGTGGGTACGGGTGT
GACAGTGGACTCGGCCATCAACACCAACCCCAAGGACCTGGCATCTCGCG
ATGCCATAGATAAGAACGCCCCTAATCCCAAATTCTGCCAGCGCTACGGT
GCCAGCACATTAGTGCTGGACAACCGCATCTTCGTCTCCTTCAACCCTTT
CGACGTTTACGTAACGCAGGCTGACGTCAAGCCCGGCTGCGTATTGCGTG
CCGCAAATGTGGTACAGGCCCTGCAAGGCCGGGGGCTCCTCACGGACGAA
GAGGTGAATGTCTGTAAGAACGGCAATAATACCTGGGCGTACGTTGGTGA
CATCAATGACAAGCCCCAGCTCTCCTGTGTGTACCAATCCGACGACGCAC
AGAATGAGTTTTTGGAGAACCCCAAGCTGGGCGTAGGAGAAGATGTGTAC
GACAAATAGATGGAGCCTCAGCCCACTATCTCTCGGTCCACGCGTCGCAA
GACAATTGCCCCTCTTCCCTGTGGGCTGGCTCTGCTCTTCATCGTTTGTG
GCTGTTGCTTGCCCCTTAGTCAGGCCTTCCTTCCCCCACATTTCAGCCAG
GCGGGCAGCCGGACTCTATCCTTGCTTGGTCTCCGCCAACCCTCCTCATC
ACGCTCGTCGTCACTACGACTGGGGAGGAGGCTAGGTATTCCCCTGTACA
GCATGTTGGACAAGGAGGGGAACAAACGCCGTCGTCGACGACGCCAAGGC
AACGGGAATGAGAGCAATGAAAAGGAAGAGGAAGAGGAGTATCGAGCCAT
GAGACCAGCAGCCCTGGACCGGGTACGCCCTCCACCCCCGCCCCGGATCC
GCCCAGAGGTGGGCAAGAACCGGCTACCATTTGGCGTCTCATGGATCCCC
CAGGGCCTAAGTGCGGCCCTACTCATGGGCACATTTGTTTTGGGTGTGGG
TACGGGTGTGACAGTGGACTCGGCCATCAACACCAACCCCAAGGACCTGG
CATCTCGCGATGCCATAGATAAGAACGCCCCTAATCCCAAATTCTGCCAG
CGCTACGGTGCCAGCACATTAGTGCTGGACAACCGCATCTTCGTCTCCTT
CAACCCTTTCGACGTTTACGTAACGCAGGCTGACGTCAAGCCCGGCTGCG
TATTGCGTGCCGCAAATGTGGTACAGGCCCTGCAAGGCCGGGGGCTCCTC
ACGGACGAAGAGGTGAATGTCTGTAAGAACGGCAATAATACCTGGGCGTA
CGTTGGTGACATCAATGACAAGCCCCAGCTCTCCTGTGTGTACCAATCCG
ACGACGCACAGAATGAGTTTTTGGAGAACCCCAAGCTGGGCGTAGGAGAA
GATGTGTACGACAAATAGATGGAGCCTCAGCCCACTATCTCTCGGTCCAC
GCGTCGCAAGACAATTGCCCCTCTTCCCTGTGGGCTGGCTCTGCTCTTCA
TCGTTTGTGGCTGTTGCTTGCCCCTTAGTCAGGCCTTCCTTCCCCCACAT
TTCAGCCAGGCGGGCAGCCGGACTCTATCCTTGCTTGGTCTCCGCCAACC
CTCCTCATCACGCTCGTCGTCACTACGACTGGGGAGGAGGCTAGGTATTC
CCCTGTACAGCATGTTGGACAAGGAGGGGAACAAACGCCGTCGTCGACGA
CGCCAAGGCAACGGGAATGAGAGCAATGAAAAGGAAGAGGAAGAGGAGTA
TCGAGCCATGAGACCAGCAGCCCTGGACCGGGTACGCCCTCCACCCCCGC
CCCGGATCCGCCCAGAGGTGGGCAAGAACCGGCTACCATTTGGCGTCTCA
TGGATCCCCCAGGGCCTAAGTGCGGCCCTACTCATGGGCACATTTGTTTT
GGGTGTGGGTACGGGTGTGACAGTGGACTCGGCCATCAACACCAACCCCA
AGGACCTGGCATCTCGCGATGCCATAGATAAGAACGCCCCTAATCCCAAA
TTCTGCCAGCGCTACGGTGCCAGCACATTAGTGCTGGACAACCGCATCTT
CGTCTCCTTCAACCCTTTCGACGTTTACGTAACGCAGGCTGACGTCAAGC
CCGGCTGCGTATTGCGTGCCGCAAATGTGGTACAGGCCCTGCAAGGCCGG
GGGCTCCTCACGGACGAAGAGGTGAATGTCTGTAAGAACGGCAATAATAC
CTGGGCGTACGTTGGTGACATCAATGACAAGCCCCAGCTCTCCTGTGTGT
ACCAATCCGACGACGCACAGAATGAGTTTTTGGAGAACCCCAAGCTGGGC
GTAGGAGAAGATGTGTACGACAAATAGATGGAGCCTCAGCCCACTATCTC
TCGGTCCACGCGTCGCAAGACAATTGCCCCTCTTCCCTGTGGGCTGGCTC
TGCTCTTCATCGTTTGTGGCTGTTGCTTGCCCCTTAGTCAGGCCTTCCTT
CCCCCACATTTCAGCCAGGCGGGCAGCCGGACTCTATCCTTGCTTGGTCT
CCGCCAACCCTCCTCATCACGCTCGTCGTCACTACGACTGGGGAGGAGGC
TAGGTATTCCCCTGTACAGCATGTTGGACAAGGAGGGGAACAAACGCCGT
CGTCGACGACGCCAAGGCAACGGGAATGAGAGCAATGAAAAGGAAGAGGA
AGAGGAGTATCGAGCCATGAGACCAGCAGCCCTGGACCGGGTACGCCCTC
CACCCCCGCCCCGGATCCGCCCAGAGGTGGGCAAGAACCGGCTACCATTT
GGCGTCTCATGGATCCCCCAGGGCCTAAGTGCGGCCCTACTCATGGGCAC
ATTTGTTTTGGGTGTGGGTACGGGTGTGACAGTGGACTCGGCCATCAACA
CCAACCCCAAGGACCTGGCATCTCGCGATGCCATAGATAAGAACGCCCCT
AATCCCAAATTCTGCCAGCGCTACGGTGCCAGCACATTAGTGCTGGACAA
CCGCATCTTCGTCTCCTTCAACCCTTTCGACGTTTACGTAACGCAGGCTG
ACGTCAAGCCCGGCTGCGTATTGCGTGCCGCAAATGTGGTACAGGCCCTG
CAAGGCCGGGGGCTCCTCACGGACGAAGAGGTGAATGTCTGTAAGAACGG
CAATAATACCTGGGCGTACGTTGGTGACATCAATGACAAGCCCCAGCTCT
CCTGTGTGTACCAATCCGACGACGCACAGAATGAGTTTTTGGAGAACCCC
AAGCTGGGCGTAGGAGAAGATGTGTACGACAAATAG

Synonyms

Publications