jgi.p|Nanoce1779_2|590139, mRNA_5730 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|590139
Unique NamemRNA_5730
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1434
Alignment locationscaffold_11:436628..438226 -

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Properties
Property NameValue
TranscriptId590225
TrackFilteredModels2
ProteinId590139
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:436628..438226 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590139gene_5730Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590139mRNA_5730-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5730CDS_5730Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5730 ID=mRNA_5730|Name=jgi.p|Nanoce1779_2|590139|organism=Nannochloropsis oceanica|type=mRNA|length=1434bp
ACAGAAAAGCTTTCGAAAGGCTGCGTTGCGCTTTTGTCCCCGTGATCGCC
CACTCCAAACACGTCTCAACCCGGACGTGTCGTCATGATGGCTGCCCACC
GCCATATTTGGAGCGTGCCGCGCCAGCTCCTGGGATATGTCCTGCTGATG
GTGTTGCTGCAGATTGTGCCGGCCTCTCGGGATGAAGCGACGATGAAGGA
CCGCTTGACCGAGAGCCTGGTGGTTGTGAGCCAAGCTCGGGCCATTCAAC
AGCTGGTCAATGCGCTGAGCGACGGGTTATACTCTGGAGACAAAGTAACC
AAGCTAGCTCTCATCGGGGCGCAGGCCCGGACTGCGGCAAGAGCGGTCCT
TGAAGTGCTGGCAGACGGTCGGGGCTGCATGCAATGGAACGCGGCTCAAC
TCGCAAAGCCAGGTGACTGGGTGACATCGACGGGCGGTGTGCGTGATGCT
TTGGTCCAGGCGTCCCAGGCGGTGGGCGTAGACGGGGAGTTGGTGGTGAT
TGTGAAGCACATGGAGAAGGTGGAGTGCGGCAATCTCATGCACCTGAACA
ACTTAATGCTTGCCATGGATTCGGGTTCTTCATTGAGGGCGGAGGGCAGC
TTGATCCCCACCTTCTTCTTCATGTTTGAACAAGACCCTCCTCGCCGGGC
GATGGTGGATGGCGGAATTCGCAGCCACCTGGTGGAAGCCATCGACATGC
GTTGTCACCCAGGGCCTGGTCTCAACCTCCGCGCCTTCTTTGGGCGCCTC
GAGCCCATTACGTTCGCGCCCTTGCCTACGGACGCTTCCCCTGACACCCG
GCCTCTCAGCGGCACCTTGCCAAGCGGAGGGCGCGGGCGGCGGGATCTTT
GGGGCTTGGCGTGGCCCTTTGGCAAGCAAGGCGATCTTTCTGTTACCTGC
AAACTTCTAGCCATGGTAGTTGTAGGCCTTGGGACCTACACCCTTGTCCG
GGCCGCCACTGCTGCTGTCCGACAAAGGGATGTTGCCGAGAGGACACCTT
CTCCCGCGCTAGGGTCAGGGATCCCACCCAGCAAGCTGCTTAACGGGGTC
GAGCTTGATGAATGCATGACAGGAACAGGGGCAGTGGAGACGCTGATGAC
AACCGTACGGGGTGGCAAGGACACGCCGGCCAGCGCCACTCGTCGTCATG
CAGCACAGGAAAGGACAGACGAGGCCGGTGGGGGAAAGGCCACGAATGGG
GGTGTTGTCAAGCCCAAAAAAGCGAGTGTGGCCAAGAGAGCCGCCTCACC
CAAGCCAGGTCATCGAGCGCCAAGGTGAGCAGCATTTACAAAGCAAAAGA
ATGAATACGAAGGAGGAAGAGAAGCATGTGAATGTATATGCGAATACGTC
GCCACTTTCATGTACGCTTGTTAATTTGTATATCCCCCAGTCAGAAAAAA
GGAAAACCCCAAAAGAAGCAAAAAATATAATAGT
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protein sequence of jgi.p|Nanoce1779_2|590139

>mRNA_5730-protein ID=mRNA_5730-protein|Name=jgi.p|Nanoce1779_2|590139|organism=Nannochloropsis oceanica|type=polypeptide|length=398bp
MMAAHRHIWSVPRQLLGYVLLMVLLQIVPASRDEATMKDRLTESLVVVSQ
ARAIQQLVNALSDGLYSGDKVTKLALIGAQARTAARAVLEVLADGRGCMQ
WNAAQLAKPGDWVTSTGGVRDALVQASQAVGVDGELVVIVKHMEKVECGN
LMHLNNLMLAMDSGSSLRAEGSLIPTFFFMFEQDPPRRAMVDGGIRSHLV
EAIDMRCHPGPGLNLRAFFGRLEPITFAPLPTDASPDTRPLSGTLPSGGR
GRRDLWGLAWPFGKQGDLSVTCKLLAMVVVGLGTYTLVRAATAAVRQRDV
AERTPSPALGSGIPPSKLLNGVELDECMTGTGAVETLMTTVRGGKDTPAS
ATRRHAAQERTDEAGGGKATNGGVVKPKKASVAKRAASPKPGHRAPR*
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mRNA from alignment at scaffold_11:436628..438226-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5730 ID=mRNA_5730|Name=jgi.p|Nanoce1779_2|590139|organism=Nannochloropsis oceanica|type=mRNA|length=1599bp|location=Sequence derived from alignment at scaffold_11:436628..438226- (Nannochloropsis oceanica)
ACAGAAAAGCTTTCGAAAGGCTGCGTTGCGCTTTTGTCCCCGTGATCGCC
CACTCCAAACACGTCTCAACCCGGACGTGTCGTCATGATGGCTGCCCACC
GCCATATTTGGAGCGTGCCGCGCCAGCTCCTGGGATATGTCCTGCTGATG
GTGTTGCTGCAGATTGTGCCGGCCTCTCGGGATGAAGCGACGATGAAGGA
CCGCTTGAGTAAGTGTGGAGTTTCTTAACCTCTCCTTTCCAAGTTTCCCA
TTCATATACATGTACCTCTCATACCAGCCCGGTCATGCTCACACCTACAA
TATGTTGTCTTTTCTACTCCACGCCTCTCCCAACACCATGCCGTCATGTC
TCTATACACCACTGAATACACAGCCGAGAGCCTGGTGGTTGTGAGCCAAG
CTCGGGCCATTCAACAGCTGGTCAATGCGCTGAGCGACGGGTTATACTCT
GGAGACAAAGTAACCAAGCTAGCTCTCATCGGGGCGCAGGCCCGGACTGC
GGCAAGAGCGGTCCTTGAAGTGCTGGCAGACGGTCGGGGCTGCATGCAAT
GGAACGCGGCTCAACTCGCAAAGCCAGGTGACTGGGTGACATCGACGGGC
GGTGTGCGTGATGCTTTGGTCCAGGCGTCCCAGGCGGTGGGCGTAGACGG
GGAGTTGGTGGTGATTGTGAAGCACATGGAGAAGGTGGAGTGCGGCAATC
TCATGCACCTGAACAACTTAATGCTTGCCATGGATTCGGGTTCTTCATTG
AGGGCGGAGGGCAGCTTGATCCCCACCTTCTTCTTCATGTTTGAACAAGA
CCCTCCTCGCCGGGCGATGGTGGATGGCGGAATTCGCAGCCACCTGGTGG
AAGCCATCGACATGCGTTGTCACCCAGGGCCTGGTCTCAACCTCCGCGCC
TTCTTTGGGCGCCTCGAGCCCATTACGTTCGCGCCCTTGCCTACGGACGC
TTCCCCTGACACCCGGCCTCTCAGCGGCACCTTGCCAAGCGGAGGGCGCG
GGCGGCGGGATCTTTGGGGCTTGGCGTGGCCCTTTGGCAAGCAAGGCGAT
CTTTCTGTTACCTGCAAACTTCTAGCCATGGTAGTTGTAGGCCTTGGGAC
CTACACCCTTGTCCGGGCCGCCACTGCTGCTGTCCGACAAAGGGATGTTG
CCGAGAGGACACCTTCTCCCGCGCTAGGGTCAGGGATCCCACCCAGCAAG
CTGCTTAACGGGGTCGAGCTTGATGAATGCATGACAGGAACAGGGGCAGT
GGAGACGCTGATGACAACCGTACGGGGTGGCAAGGACACGCCGGCCAGCG
CCACTCGTCGTCATGCAGCACAGGAAAGGACAGACGAGGCCGGTGGGGGA
AAGGCCACGAATGGGGGTGTTGTCAAGCCCAAAAAAGCGAGTGTGGCCAA
GAGAGCCGCCTCACCCAAGCCAGGTCATCGAGCGCCAAGGTGAGCAGCAT
TTACAAAGCAAAAGAATGAATACGAAGGAGGAAGAGAAGCATGTGAATGT
ATATGCGAATACGTCGCCACTTTCATGTACGCTTGTTAATTTGTATATCC
CCCAGTCAGAAAAAAGGAAAACCCCAAAAGAAGCAAAAAATATAATAGT
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Coding sequence (CDS) from alignment at scaffold_11:436628..438226-

>mRNA_5730 ID=mRNA_5730|Name=jgi.p|Nanoce1779_2|590139|organism=Nannochloropsis oceanica|type=CDS|length=2388bp|location=Sequence derived from alignment at scaffold_11:436628..438226- (Nannochloropsis oceanica)
CCGAGAGCCTGGTGGTTGTGAGCCAAGCTCGGGCCATTCAACAGCTGGTC
AATGCGCTGAGCGACGGGTTATACTCTGGAGACAAAGTAACCAAGCTAGC
TCTCATCGGGGCGCAGGCCCGGACTGCGGCAAGAGCGGTCCTTGAAGTGC
TGGCAGACGGTCGGGGCTGCATGCAATGGAACGCGGCTCAACTCGCAAAG
CCAGGTGACTGGGTGACATCGACGGGCGGTGTGCGTGATGCTTTGGTCCA
GGCGTCCCAGGCGGTGGGCGTAGACGGGGAGTTGGTGGTGATTGTGAAGC
ACATGGAGAAGGTGGAGTGCGGCAATCTCATGCACCTGAACAACTTAATG
CTTGCCATGGATTCGGGTTCTTCATTGAGGGCGGAGGGCAGCTTGATCCC
CACCTTCTTCTTCATGTTTGAACAAGACCCTCCTCGCCGGGCGATGGTGG
ATGGCGGAATTCGCAGCCACCTGGTGGAAGCCATCGACATGCGTTGTCAC
CCAGGGCCTGGTCTCAACCTCCGCGCCTTCTTTGGGCGCCTCGAGCCCAT
TACGTTCGCGCCCTTGCCTACGGACGCTTCCCCTGACACCCGGCCTCTCA
GCGGCACCTTGCCAAGCGGAGGGCGCGGGCGGCGGGATCTTTGGGGCTTG
GCGTGGCCCTTTGGCAAGCAAGGCGATCTTTCTGTTACCTGCAAACTTCT
AGCCATGGTAGTTGTAGGCCTTGGGACCTACACCCTTGTCCGGGCCGCCA
CTGCTGCTGTCCGACAAAGGGATGTTGCCGAGAGGACACCTTCTCCCGCG
CTAGGGTCAGGGATCCCACCCAGCAAGCTGCTTAACGGGGTCGAGCTTGA
TGAATGCATGACAGGAACAGGGGCAGTGGAGACGCTGATGACAACCGTAC
GGGGTGGCAAGGACACGCCGGCCAGCGCCACTCGTCGTCATGCAGCACAG
GAAAGGACAGACGAGGCCGGTGGGGGAAAGGCCACGAATGGGGGTGTTGT
CAAGCCCAAAAAAGCGAGTGTGGCCAAGAGAGCCGCCTCACCCAAGCCAG
GTCATCGAGCGCCAAGGTGAATGATGGCTGCCCACCGCCATATTTGGAGC
GTGCCGCGCCAGCTCCTGGGATATGTCCTGCTGATGGTGTTGCTGCAGAT
TGTGCCGGCCTCTCGGGATGAAGCGACGATGAAGGACCGCTTGACCGAGA
GCCTGGTGGTTGTGAGCCAAGCTCGGGCCATTCAACAGCTGGTCAATGCG
CTGAGCGACGGGTTATACTCTGGAGACAAAGTAACCAAGCTAGCTCTCAT
CGGGGCGCAGGCCCGGACTGCGGCAAGAGCGGTCCTTGAAGTGCTGGCAG
ACGGTCGGGGCTGCATGCAATGGAACGCGGCTCAACTCGCAAAGCCAGGT
GACTGGGTGACATCGACGGGCGGTGTGCGTGATGCTTTGGTCCAGGCGTC
CCAGGCGGTGGGCGTAGACGGGGAGTTGGTGGTGATTGTGAAGCACATGG
AGAAGGTGGAGTGCGGCAATCTCATGCACCTGAACAACTTAATGCTTGCC
ATGGATTCGGGTTCTTCATTGAGGGCGGAGGGCAGCTTGATCCCCACCTT
CTTCTTCATGTTTGAACAAGACCCTCCTCGCCGGGCGATGGTGGATGGCG
GAATTCGCAGCCACCTGGTGGAAGCCATCGACATGCGTTGTCACCCAGGG
CCTGGTCTCAACCTCCGCGCCTTCTTTGGGCGCCTCGAGCCCATTACGTT
CGCGCCCTTGCCTACGGACGCTTCCCCTGACACCCGGCCTCTCAGCGGCA
CCTTGCCAAGCGGAGGGCGCGGGCGGCGGGATCTTTGGGGCTTGGCGTGG
CCCTTTGGCAAGCAAGGCGATCTTTCTGTTACCTGCAAACTTCTAGCCAT
GGTAGTTGTAGGCCTTGGGACCTACACCCTTGTCCGGGCCGCCACTGCTG
CTGTCCGACAAAGGGATGTTGCCGAGAGGACACCTTCTCCCGCGCTAGGG
TCAGGGATCCCACCCAGCAAGCTGCTTAACGGGGTCGAGCTTGATGAATG
CATGACAGGAACAGGGGCAGTGGAGACGCTGATGACAACCGTACGGGGTG
GCAAGGACACGCCGGCCAGCGCCACTCGTCGTCATGCAGCACAGGAAAGG
ACAGACGAGGCCGGTGGGGGAAAGGCCACGAATGGGGGTGTTGTCAAGCC
CAAAAAAGCGAGTGTGGCCAAGAGAGCCGCCTCACCCAAGCCAGGTCATC
GAGCGCCAAGGTGAATGATGGCTGCCCACCGCCATATTTGGAGCGTGCCG
CGCCAGCTCCTGGGATATGTCCTGCTGATGGTGTTGCTGCAGATTGTGCC
GGCCTCTCGGGATGAAGCGACGATGAAGGACCGCTTGA
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Synonyms
Publications