jgi.p|Nanoce1779_2|590120, mRNA_5728 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|590120
Unique NamemRNA_5728
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length663
Alignment locationscaffold_11:431955..432617 +

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Properties
Property NameValue
TranscriptId590206
TrackFilteredModels2
ProteinId590120
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:431955..432617 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590120gene_5728Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590120mRNA_5728-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5728CDS_5728Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5728 ID=mRNA_5728|Name=jgi.p|Nanoce1779_2|590120|organism=Nannochloropsis oceanica|type=mRNA|length=663bp
GCTTAAACGGCTGAATCGGGCCGGCCGACGGACTGGCCCATGGTACTAAA
ATACTTGACGCTCTTATGTGCGTGCTTGTCTTTGTCCCCAAACCTTTACG
CCCCTCAAGCTCCTACCTTTCACAACCTATATTTAGACACTATAGTGAGA
GATACGGTAGAGTACCTGAACTGCACGCGCAGGGTGGGAGAAACCTGGGG
AGAAAGCCTGTGTAAGGGAAGACCTCTCCTTCATACGACGCATACAACAG
AAAAGCGGACGAAGCTAGGAAATAAGGAGCAACCACGTCACTGACCAAGA
GCGGGTAATGACAACAAGACGACGGTCATCTGTTTCCTTCCAGCTGCATG
AAAGCCAATTTCCATTGCAGCTGCCTCAGACCGCAACAACCTATGGACCC
GAGGTAGGCAACGCGGCTTCACGCATCCGTCGGGCGCTCCCGCTACCTTT
GCTTGCCTTCGGATTGGGCATGGCGGCCATGGTAAGTCTAAGAACATGGG
ATATTAGACTGCGTACTAGTGTTATTTTCCACCTGGACACAATACAGGGA
ACAGGTTACACCTCATTCTTTCACTACGTACACAGGGAGGGTGGGTGTGG
GCGGCGCCTGCATTTGTGTATGCTGGGCTTGAGCTCTACAAGGGTAGTAA
AGCCAGTAAAGGT
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protein sequence of jgi.p|Nanoce1779_2|590120

>mRNA_5728-protein ID=mRNA_5728-protein|Name=jgi.p|Nanoce1779_2|590120|organism=Nannochloropsis oceanica|type=polypeptide|length=85bp
MVLKYLTLLCACLSLSPNLYAPQAPTFHNLYLDTIVRDTVEYLNCTRRVG
ETWGESLCKGRPLLHTTHTTEKRTKLGNKEQPRH*
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mRNA from alignment at scaffold_11:431955..432617+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5728 ID=mRNA_5728|Name=jgi.p|Nanoce1779_2|590120|organism=Nannochloropsis oceanica|type=mRNA|length=663bp|location=Sequence derived from alignment at scaffold_11:431955..432617+ (Nannochloropsis oceanica)
GCTTAAACGGCTGAATCGGGCCGGCCGACGGACTGGCCCATGGTACTAAA
ATACTTGACGCTCTTATGTGCGTGCTTGTCTTTGTCCCCAAACCTTTACG
CCCCTCAAGCTCCTACCTTTCACAACCTATATTTAGACACTATAGTGAGA
GATACGGTAGAGTACCTGAACTGCACGCGCAGGGTGGGAGAAACCTGGGG
AGAAAGCCTGTGTAAGGGAAGACCTCTCCTTCATACGACGCATACAACAG
AAAAGCGGACGAAGCTAGGAAATAAGGAGCAACCACGTCACTGACCAAGA
GCGGGTAATGACAACAAGACGACGGTCATCTGTTTCCTTCCAGCTGCATG
AAAGCCAATTTCCATTGCAGCTGCCTCAGACCGCAACAACCTATGGACCC
GAGGTAGGCAACGCGGCTTCACGCATCCGTCGGGCGCTCCCGCTACCTTT
GCTTGCCTTCGGATTGGGCATGGCGGCCATGGTAAGTCTAAGAACATGGG
ATATTAGACTGCGTACTAGTGTTATTTTCCACCTGGACACAATACAGGGA
ACAGGTTACACCTCATTCTTTCACTACGTACACAGGGAGGGTGGGTGTGG
GCGGCGCCTGCATTTGTGTATGCTGGGCTTGAGCTCTACAAGGGTAGTAA
AGCCAGTAAAGGT
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Coding sequence (CDS) from alignment at scaffold_11:431955..432617+

>mRNA_5728 ID=mRNA_5728|Name=jgi.p|Nanoce1779_2|590120|organism=Nannochloropsis oceanica|type=CDS|length=255bp|location=Sequence derived from alignment at scaffold_11:431955..432617+ (Nannochloropsis oceanica)
ATGGTACTAAAATACTTGACGCTCTTATGTGCGTGCTTGTCTTTGTCCCC
AAACCTTTACGCCCCTCAAGCTCCTACCTTTCACAACCTATATTTAGACA
CTATAGTGAGAGATACGGTAGAGTACCTGAACTGCACGCGCAGGGTGGGA
GAAACCTGGGGAGAAAGCCTGTGTAAGGGAAGACCTCTCCTTCATACGAC
GCATACAACAGAAAAGCGGACGAAGCTAGGAAATAAGGAGCAACCACGTC
ACTGA
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Synonyms
Publications