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Properties
| Property Name | Value |
|---|
| TranscriptId | 590204 |
| Track | FilteredModels2 |
| ProteinId | 590118 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_11 | supercontig | scaffold_11:430464..431776 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5727 ID=mRNA_5727|Name=jgi.p|Nanoce1779_2|590118|organism=Nannochloropsis oceanica|type=mRNA|length=863bp
CACAGTGCTTATGGGCGTTTTCCCTTCTTCCTCTTCCCCCCCCTCCTCCT
CTTCATCTTCATCTTTCCTCTCCTCCTCCTTCTCCTCCTGTTCCTCCTGT
TCCCTTTCCTCCTTTTTCTCCTCCTCCTTGTCGCCCTCCTCTTGCCCCTG
TTTCTCTTCGGTCTCTTCGTCCATCTCCTCCGACTTGCCCTCATCCTCTT
CCCCGTCGCATACCCCCATATTTCTTCCTTCCTCCTTCGCGAACACACGA
ATGGTCTTGTATTTCTTTGTGTTCTCAGCGACTAGTGCAGCGGTCGCTTT
GATCGTGGGGTTTGTGGCAGACAGAACGTCATCGTCGGATTCGTCGTCGT
CGTCCTTGACCACCCGGCGAAGGCGCTTGCGGGATTTAGTGTTGCTGCTA
CCAACGGTGCTGTCACTGGGTTCCTCAATAATCGCCTCGGTGCCAGCAGC
AAACTTCACAGTCATACTCGCATCAGCCGCATGCACAGGCACAGACATAG
GCGCAGCCGCTGCCGCAATAATTTTGTCCTCAGCCCTCTTGCTCCGCCGC
TCGCTCTTTGCTTTGGTCGCTCCTGTCACTGCCGTAAAGACGGGCTTGGC
CACGATCGAGTCTTCTTCCTCCTTATCCGCAGCGTTGGAGGTCGGAAAAA
CCATAGGGACCTCCAACTCGACCGCTTTCGCCTTCTCCTTCTTGTCTTTC
GGGCTAGCGGTGGCGTCTTTCGTCTCTGTCTTGGCAGAGACAGAAGGGTT
TGTTTTATCTCCGCTGCCCTTCTTGAAAAAATTCATGATGGAACCCTGCT
TCGCCGAAGCGGAAGCTGCCACGCTGCTGCTCATTTTCTTGCAGTCGTTT
TCTGTGGTGGGCT back to topprotein sequence of jgi.p|Nanoce1779_2|590118 >mRNA_5727-protein ID=mRNA_5727-protein|Name=jgi.p|Nanoce1779_2|590118|organism=Nannochloropsis oceanica|type=polypeptide|length=284bp
MGVFPSSSSPPSSSSSSSFLSSSFSSCSSCSLSSFFSSSLSPSSCPCFSS
VSSSISSDLPSSSSPSHTPIFLPSSFANTRMVLYFFVFSATSAAVALIVG
FVADRTSSSDSSSSSLTTRRRRLRDLVLLLPTVLSLGSSIIASVPAANFT
VILASAACTGTDIGAAAAAIILSSALLLRRSLFALVAPVTAVKTGLATIE
SSSSLSAALEVGKTIGTSNSTAFAFSFLSFGLAVASFVSVLAETEGFVLS
PLPFLKKFMMEPCFAEAEAATLLLIFLQSFSVVG back to topmRNA from alignment at scaffold_11:430464..431776+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5727 ID=mRNA_5727|Name=jgi.p|Nanoce1779_2|590118|organism=Nannochloropsis oceanica|type=mRNA|length=1313bp|location=Sequence derived from alignment at scaffold_11:430464..431776+ (Nannochloropsis oceanica)
CACAGTGCTTATGGGCGTTTTCCCTTCTTCCTCTTCCCCCCCCTCCTCCT
CTTCATCTTCATCTTTCCTCTCCTCCTCCTTCTCCTCCTGTTCCTCCTGT
TCCCTTTCCTCCTTTTTCTCCTCCTCCTTGTCGCCCTCCTCTTGCCCCTG
TTTCTCTTCGGTCTCTTCGTCCATCTCCTCCGACTTGCCCTCATCCTCTT
CCCCGTCGCATACCCCCATATTTCTTCCTTCCTCCTTCGCGAACACACGA
ATGGTCTTGTATTTCTTTGTGTTCTCAGCGACTAGTGCAGCGGTCGCTTT
GATCGTGGGGTTTGTGGCAGACAGAACGTCATCGTCGGATTCGTCGTCGT
CGTCCTTGACCACCCGGCGAAGGCGCTTGCGGGATTTAGTGTTGCTGCTA
CCAACGGTGCTGTCACTGGGTTCCTCAATAATCGCCTCGGTGCCAGCAGC
AAACTTCACAGTCATACTCGCATCAGCCGCATGCACAGGCACAGACATAG
GCGCAGCCGCTGCCGCAATAATTTTGTCCTCAGCCCTCTTGCTCCGCCGC
TCGCTCTTTGCTTTGGTCGCTCCTGTCACTGCCGTAAAGACGGGCTTGGC
CACGATCGAGTCTTCTTCCTCCTTATCCGCAGCGTTGGAGGTCGGAAAAA
CCATAGGGACCTCCAACTCGACCGCTTTCGCCTTCTCCTTCTTGTCTTTC
GGGCTAGCGGTGGCGTCTTTCGTCTCTGTCTTGGCAGAGACAGAAGGGTT
TGTTTTATCTCCGCTGCCCTTCTTGAAAAAATTCCTGATTTTGTTTGATG
TACCAACGAGGGGATAGCGAGGTATGAGAAAAGAATTGGGTCAGTCCGGG
CACTCAGTTCAGATCTCAAAAGATGGATCGACATGGAGAAAAGGAAAATG
GATGAGGCAGAGGGAGGGACAGGAGATGAAGTGTAAGGAATTCGGAGCGC
TTGAGCCCTGCGCGCTATCCTTGGCATCGTACGCCAAAAGGCGGCGGAGA
TGAAGCATGCACCATGAGAAAGGCTTAACCACCTCACACAAAGGTATAAA
CACCCACCCTATATGATGGCGAGAGCCAATAACAAGGGGCCGGAACATTC
GGCATTGCTGCAGCCATGCAGGCGTGCTCGTGCGTCGCCTTTCTCACCAA
AGCATGCAAAGCATAAGGCAAGCGTACATACAAACAGCACAATGTGACGT
GTCTCTACAGACACACCCATGCACAATTACTTACATGATGGAACCCTGCT
TCGCCGAAGCGGAAGCTGCCACGCTGCTGCTCATTTTCTTGCAGTCGTTT
TCTGTGGTGGGCT back to topCoding sequence (CDS) from alignment at scaffold_11:430464..431776+ >mRNA_5727 ID=mRNA_5727|Name=jgi.p|Nanoce1779_2|590118|organism=Nannochloropsis oceanica|type=CDS|length=1706bp|location=Sequence derived from alignment at scaffold_11:430464..431776+ (Nannochloropsis oceanica)
ATGGGCGTTTTCCCTTCTTCCTCTTCCCCCCCCTCCTCCTCTTCATCTTC
ATCTTTCCTCTCCTCCTCCTTCTCCTCCTGTTCCTCCTGTTCCCTTTCCT
CCTTTTTCTCCTCCTCCTTGTCGCCCTCCTCTTGCCCCTGTTTCTCTTCG
GTCTCTTCGTCCATCTCCTCCGACTTGCCCTCATCCTCTTCCCCGTCGCA
TACCCCCATATTTCTTCCTTCCTCCTTCGCGAACACACGAATGGTCTTGT
ATTTCTTTGTGTTCTCAGCGACTAGTGCAGCGGTCGCTTTGATCGTGGGG
TTTGTGGCAGACAGAACGTCATCGTCGGATTCGTCGTCGTCGTCCTTGAC
CACCCGGCGAAGGCGCTTGCGGGATTTAGTGTTGCTGCTACCAACGGTGC
TGTCACTGGGTTCCTCAATAATCGCCTCGGTGCCAGCAGCAAACTTCACA
GTCATACTCGCATCAGCCGCATGCACAGGCACAGACATAGGCGCAGCCGC
TGCCGCAATAATTTTGTCCTCAGCCCTCTTGCTCCGCCGCTCGCTCTTTG
CTTTGGTCGCTCCTGTCACTGCCGTAAAGACGGGCTTGGCCACGATCGAG
TCTTCTTCCTCCTTATCCGCAGCGTTGGAGGTCGGAAAAACCATAGGGAC
CTCCAACTCGACCGCTTTCGCCTTCTCCTTCTTGTCTTTCGGGCTAGCGG
TGGCGTCTTTCGTCTCTGTCTTGGCAGAGACAGAAGGGTTTGTTTTATCT
CCGCTGCCCTTCTTGAAAAAATTCATGATGGAACCCTGCTTCGCCGAAGC
GGAAGCTGCCACGCTGCTGCTCATTTTCTTGCAGTCGTTTTCTGTGGTGG
GCTATGGGCGTTTTCCCTTCTTCCTCTTCCCCCCCCTCCTCCTCTTCATC
TTCATCTTTCCTCTCCTCCTCCTTCTCCTCCTGTTCCTCCTGTTCCCTTT
CCTCCTTTTTCTCCTCCTCCTTGTCGCCCTCCTCTTGCCCCTGTTTCTCT
TCGGTCTCTTCGTCCATCTCCTCCGACTTGCCCTCATCCTCTTCCCCGTC
GCATACCCCCATATTTCTTCCTTCCTCCTTCGCGAACACACGAATGGTCT
TGTATTTCTTTGTGTTCTCAGCGACTAGTGCAGCGGTCGCTTTGATCGTG
GGGTTTGTGGCAGACAGAACGTCATCGTCGGATTCGTCGTCGTCGTCCTT
GACCACCCGGCGAAGGCGCTTGCGGGATTTAGTGTTGCTGCTACCAACGG
TGCTGTCACTGGGTTCCTCAATAATCGCCTCGGTGCCAGCAGCAAACTTC
ACAGTCATACTCGCATCAGCCGCATGCACAGGCACAGACATAGGCGCAGC
CGCTGCCGCAATAATTTTGTCCTCAGCCCTCTTGCTCCGCCGCTCGCTCT
TTGCTTTGGTCGCTCCTGTCACTGCCGTAAAGACGGGCTTGGCCACGATC
GAGTCTTCTTCCTCCTTATCCGCAGCGTTGGAGGTCGGAAAAACCATAGG
GACCTCCAACTCGACCGCTTTCGCCTTCTCCTTCTTGTCTTTCGGGCTAG
CGGTGGCGTCTTTCGTCTCTGTCTTGGCAGAGACAGAAGGGTTTGTTTTA
TCTCCGCTGCCCTTCTTGAAAAAATTCATGATGGAACCCTGCTTCGCCGA
AGCGGAAGCTGCCACGCTGCTGCTCATTTTCTTGCAGTCGTTTTCTGTGG
TGGGCT back to top
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