jgi.p|Nanoce1779_2|590112, mRNA_5724 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|590112
Unique Name	mRNA_5724
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2854
Alignment location	scaffold_11:420857..423710 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	590198
Track	FilteredModels2
ProteinId	590112

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_11	supercontig	scaffold_11:420857..423710 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|590112	gene_5724	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|590112	mRNA_5724-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5724	CDS_5724	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_11:420857..423710-
coding sequence from alignment at scaffold_11:420857..423710-

mRNA sequence

>mRNA_5724 ID=mRNA_5724|Name=jgi.p|Nanoce1779_2|590112|organism=Nannochloropsis oceanica|type=mRNA|length=2854bp
GTCTAAGCAATCCATCTATCCATCTCCCTTCCTGCTCCAATTGAGAATGG
TAGAAGCCGACAACGCGGTAGCCAAAAGCGAGGCACCGGCATCTACAGAG
AAGACCGCCACCAGCTTGTGCGGTTATGCTACTTATTGTGCCTTGTCATG
GAAGTATTCGCAAGTTAAAAGGGTGGGAAGGCCTTCTAACTTTTACCACC
ATACAAAACTCCTCTAGTCGCTGAAAGCGACCATCATCATCATCATCATC
ATACACGCCCTAAACAGCCTCCCCCCATTCCACATTCCACACACGATAGG
CAGGACGTCTATTTGTCCTCCTTGGGTTGCATGGTAGGTCACAAGGAATG
AGCGGGGCTCTACTTTTGCTCGGCTTTCTACTGTAAAACCTCCTCCCACC
CTCCCCCGCTGGGCTACTGAGTGCGGCTGCGCGCTGGCCTGCGTGCTACT
CTGTCTTTCTCCAACCCACCCGCGATGCAAGACGTGACCATTCTGAGCTG
GAACGTTGCCGCGCTCCGGTCGCTCGCAAAGGACAAATATGTTGTTGGCA
GGAGTAATTGGCTCAGGCTGAAGCTGGTCGAGTTGGGAGAGCCTGCGTGT
GTGTGCCTACAGGAGACAAAGGTGCCACATGACATGCTTACCGAGGATGT
GGCAATATTGGAGGGCTACCACGCCTTCTTTTCGCGATGTCGAAGGGGTG
CGGCACATGGGGGAGCTTACTCAGGCGTCGTTACTTACGTTAAGAAGGAA
ATGCGGGTAGAGGCAGCGGTCGCGGGCCTGATCTGCTGTTCGTACATTTC
CAAGAGAGGCTTTAACGACCTACCGAGCACAGCCGAAGGAAAGAGGTGTC
CTTTTGCCTGCGCGGACTTTCGCGAAGCCTGGGAGGCAGTCGTCTGTAAG
TTAGACGACTGTAACTTAGACGACCAGCGGAGAGGGGTCGAGGATCGCGC
GGCAACAGCGGCTACGGTTGGGTGTGGGGAAGCAGGAGGTGAAGGTTGTA
GAAGAGGAAAAGAATTTGGTGGAGACACACGGAAGGGGGTAGTGGCTCTA
AAGGACGATTATAATGAAAAGACTGGGCCAACATCCGAAGAGCTGGTTGA
GGCAACGAGTCCCTTGGATTTACTACGCTCGATGGATAAGGAGGGCCGGG
TGGTCATGACAGACCACGCGGCGTTTGTACTTATCAACGTGTACGCTCCG
TTTAACAGCCGGCCTGCGCGCGCTCGTTTTAAAAAGGCTTTTAATGCTGC
CCTAAAAGCCCGCGTTCAAACTCTTTCTGCGGCGGGGCGGCAAGTAGTGC
TCTGTGGAGATTTGAACGCCGTGTCTCAAGCGCTAGATTCGGTCGAAGCG
CCTACAGAAGAGCAACTTTTGGCCTCACCATGGGTGCAGTGGATTCGAGA
TCTCCTGGCCCCGCGGGCTATGGAACTCAAGGGAGGGGTGGATGGGGATG
AAGCAGGACGTACAAGAGACGGGGCCGAGGTGGATCAGAAGCCGTGGGCA
GGCCGTGCTCTCTTGATCGATACATTTCGCGTCCTCCATCCTAAGCGGCC
AAACGCTTTCACTTGCTGGTGCAATCAGACAGGTGCCCGTCAAACCAATT
TTGGGCGCAGGATAGATTACATATTAGCATCTGGGGGTCTCTGCGGGATC
GGAGGGAGGGCGCCAGCTATCGCACAGCTGACAGAAGCCGAGGTACGGCA
GGAGGTTGGTGGGAGCGATCACTGCCCTGTCACTGCATGCTTTACTTTCG
ATATTTCTGCTACTTCACTCCCTTCCACTGTTGACGATGAACACGGCGGC
ACTTTTACCCCTGCCTCCCCCACATCGCCTTTCCTCGCACCGGGAGAGGA
ACAAAAGGGCCTTCCGCCTTTGTGTACATCCACATTTGCCGAGTTCCGCA
CCAAGCAGATTGGTATGCATGCGTTCTTGGGGTCGTCAACCGCAGCCTTT
CCTGATTTGATTGAACAAATTCCACGCACTTCTTACGGAGATAAGCATGC
AGCAGGAAAACGCGATATGGCAGGAAACGCTGGTGGCAAGAAACGCGCAG
GGACACTTGAATCGATGACAACGCGTCCGGCATCGAAGCTCCAGCTGACT
CTCGGCCACTTTGGCATCTCCAAGCAAATGAAAACCACGAATGGCGAGGG
ACCAGGTAGCATGGCCGCTGTTGCTTCTTCGGCGGTCAGCGTGGACCTGA
CTATTGCCTCTTCTATGTTCTCCTCCTCGTCAACAACTGAGGAGGTAGTG
GCTGCACCCCTCTCTGACCCGACGGGAGAAGCGAACAAGCGACAGATCTT
CCTCGATGCATTTCGTCCCAAGAAAGAGGAAGTCCCACGATGCAGTGGCC
ACGGCGAGCCTATGGCGAGACGACAAGTAAAGAAGACGGAGAGCGAGCAC
TGCGGAAGATACTTCTTTTGCTGCACCCGGCCAGAAGGAGCTCGCTGTAA
GACCTTTTTGTGGGAGGACACGTTGGCTGTGAGGGCAGGGGGAAAACGTG
TGCGTGGACTGCTCAAGAAGGGATAGGAGCTATGAAGGAATGAGGGCTTT
TTTGCACAGTAAAGATAGGGACAGGAAAGAAGAGCAGGATGTCAATTTGA
GAGTGTGGCTGAGACCGATCAGATTTGTGTTCCCGGAGCAGGTGGTTTTT
TCCACACAAGGAGAGAAAGTAAATTGCGGATCGTTCATACAGCTACGTAA
GTGATGAAAAGAGGAGGGATGGTTGTGCTTTCAGGTATGTATATGATGTC
TAGATTCTCGAATTTTTGTTAAGAAGACGCACGATCGCGCAGTTGTACAG
AAAGAAGGGAACACAAAAATGCAAAGAAAGAAACCGAGGTGATGGTTGGT
TGAA

protein sequence of jgi.p|Nanoce1779_2|590112

>mRNA_5724-protein ID=mRNA_5724-protein|Name=jgi.p|Nanoce1779_2|590112|organism=Nannochloropsis oceanica|type=polypeptide|length=684bp
MQDVTILSWNVAALRSLAKDKYVVGRSNWLRLKLVELGEPACVCLQETKV
PHDMLTEDVAILEGYHAFFSRCRRGAAHGGAYSGVVTYVKKEMRVEAAVA
GLICCSYISKRGFNDLPSTAEGKRCPFACADFREAWEAVVCKLDDCNLDD
QRRGVEDRAATAATVGCGEAGGEGCRRGKEFGGDTRKGVVALKDDYNEKT
GPTSEELVEATSPLDLLRSMDKEGRVVMTDHAAFVLINVYAPFNSRPARA
RFKKAFNAALKARVQTLSAAGRQVVLCGDLNAVSQALDSVEAPTEEQLLA
SPWVQWIRDLLAPRAMELKGGVDGDEAGRTRDGAEVDQKPWAGRALLIDT
FRVLHPKRPNAFTCWCNQTGARQTNFGRRIDYILASGGLCGIGGRAPAIA
QLTEAEVRQEVGGSDHCPVTACFTFDISATSLPSTVDDEHGGTFTPASPT
SPFLAPGEEQKGLPPLCTSTFAEFRTKQIGMHAFLGSSTAAFPDLIEQIP
RTSYGDKHAAGKRDMAGNAGGKKRAGTLESMTTRPASKLQLTLGHFGISK
QMKTTNGEGPGSMAAVASSAVSVDLTIASSMFSSSSTTEEVVAAPLSDPT
GEANKRQIFLDAFRPKKEEVPRCSGHGEPMARRQVKKTESEHCGRYFFCC
TRPEGARCKTFLWEDTLAVRAGGKRVRGLLKKG*

mRNA from alignment at scaffold_11:420857..423710-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5724 ID=mRNA_5724|Name=jgi.p|Nanoce1779_2|590112|organism=Nannochloropsis oceanica|type=mRNA|length=2854bp|location=Sequence derived from alignment at scaffold_11:420857..423710- (Nannochloropsis oceanica)
GTCTAAGCAATCCATCTATCCATCTCCCTTCCTGCTCCAATTGAGAATGG
TAGAAGCCGACAACGCGGTAGCCAAAAGCGAGGCACCGGCATCTACAGAG
AAGACCGCCACCAGCTTGTGCGGTTATGCTACTTATTGTGCCTTGTCATG
GAAGTATTCGCAAGTTAAAAGGGTGGGAAGGCCTTCTAACTTTTACCACC
ATACAAAACTCCTCTAGTCGCTGAAAGCGACCATCATCATCATCATCATC
ATACACGCCCTAAACAGCCTCCCCCCATTCCACATTCCACACACGATAGG
CAGGACGTCTATTTGTCCTCCTTGGGTTGCATGGTAGGTCACAAGGAATG
AGCGGGGCTCTACTTTTGCTCGGCTTTCTACTGTAAAACCTCCTCCCACC
CTCCCCCGCTGGGCTACTGAGTGCGGCTGCGCGCTGGCCTGCGTGCTACT
CTGTCTTTCTCCAACCCACCCGCGATGCAAGACGTGACCATTCTGAGCTG
GAACGTTGCCGCGCTCCGGTCGCTCGCAAAGGACAAATATGTTGTTGGCA
GGAGTAATTGGCTCAGGCTGAAGCTGGTCGAGTTGGGAGAGCCTGCGTGT
GTGTGCCTACAGGAGACAAAGGTGCCACATGACATGCTTACCGAGGATGT
GGCAATATTGGAGGGCTACCACGCCTTCTTTTCGCGATGTCGAAGGGGTG
CGGCACATGGGGGAGCTTACTCAGGCGTCGTTACTTACGTTAAGAAGGAA
ATGCGGGTAGAGGCAGCGGTCGCGGGCCTGATCTGCTGTTCGTACATTTC
CAAGAGAGGCTTTAACGACCTACCGAGCACAGCCGAAGGAAAGAGGTGTC
CTTTTGCCTGCGCGGACTTTCGCGAAGCCTGGGAGGCAGTCGTCTGTAAG
TTAGACGACTGTAACTTAGACGACCAGCGGAGAGGGGTCGAGGATCGCGC
GGCAACAGCGGCTACGGTTGGGTGTGGGGAAGCAGGAGGTGAAGGTTGTA
GAAGAGGAAAAGAATTTGGTGGAGACACACGGAAGGGGGTAGTGGCTCTA
AAGGACGATTATAATGAAAAGACTGGGCCAACATCCGAAGAGCTGGTTGA
GGCAACGAGTCCCTTGGATTTACTACGCTCGATGGATAAGGAGGGCCGGG
TGGTCATGACAGACCACGCGGCGTTTGTACTTATCAACGTGTACGCTCCG
TTTAACAGCCGGCCTGCGCGCGCTCGTTTTAAAAAGGCTTTTAATGCTGC
CCTAAAAGCCCGCGTTCAAACTCTTTCTGCGGCGGGGCGGCAAGTAGTGC
TCTGTGGAGATTTGAACGCCGTGTCTCAAGCGCTAGATTCGGTCGAAGCG
CCTACAGAAGAGCAACTTTTGGCCTCACCATGGGTGCAGTGGATTCGAGA
TCTCCTGGCCCCGCGGGCTATGGAACTCAAGGGAGGGGTGGATGGGGATG
AAGCAGGACGTACAAGAGACGGGGCCGAGGTGGATCAGAAGCCGTGGGCA
GGCCGTGCTCTCTTGATCGATACATTTCGCGTCCTCCATCCTAAGCGGCC
AAACGCTTTCACTTGCTGGTGCAATCAGACAGGTGCCCGTCAAACCAATT
TTGGGCGCAGGATAGATTACATATTAGCATCTGGGGGTCTCTGCGGGATC
GGAGGGAGGGCGCCAGCTATCGCACAGCTGACAGAAGCCGAGGTACGGCA
GGAGGTTGGTGGGAGCGATCACTGCCCTGTCACTGCATGCTTTACTTTCG
ATATTTCTGCTACTTCACTCCCTTCCACTGTTGACGATGAACACGGCGGC
ACTTTTACCCCTGCCTCCCCCACATCGCCTTTCCTCGCACCGGGAGAGGA
ACAAAAGGGCCTTCCGCCTTTGTGTACATCCACATTTGCCGAGTTCCGCA
CCAAGCAGATTGGTATGCATGCGTTCTTGGGGTCGTCAACCGCAGCCTTT
CCTGATTTGATTGAACAAATTCCACGCACTTCTTACGGAGATAAGCATGC
AGCAGGAAAACGCGATATGGCAGGAAACGCTGGTGGCAAGAAACGCGCAG
GGACACTTGAATCGATGACAACGCGTCCGGCATCGAAGCTCCAGCTGACT
CTCGGCCACTTTGGCATCTCCAAGCAAATGAAAACCACGAATGGCGAGGG
ACCAGGTAGCATGGCCGCTGTTGCTTCTTCGGCGGTCAGCGTGGACCTGA
CTATTGCCTCTTCTATGTTCTCCTCCTCGTCAACAACTGAGGAGGTAGTG
GCTGCACCCCTCTCTGACCCGACGGGAGAAGCGAACAAGCGACAGATCTT
CCTCGATGCATTTCGTCCCAAGAAAGAGGAAGTCCCACGATGCAGTGGCC
ACGGCGAGCCTATGGCGAGACGACAAGTAAAGAAGACGGAGAGCGAGCAC
TGCGGAAGATACTTCTTTTGCTGCACCCGGCCAGAAGGAGCTCGCTGTAA
GACCTTTTTGTGGGAGGACACGTTGGCTGTGAGGGCAGGGGGAAAACGTG
TGCGTGGACTGCTCAAGAAGGGATAGGAGCTATGAAGGAATGAGGGCTTT
TTTGCACAGTAAAGATAGGGACAGGAAAGAAGAGCAGGATGTCAATTTGA
GAGTGTGGCTGAGACCGATCAGATTTGTGTTCCCGGAGCAGGTGGTTTTT
TCCACACAAGGAGAGAAAGTAAATTGCGGATCGTTCATACAGCTACGTAA
GTGATGAAAAGAGGAGGGATGGTTGTGCTTTCAGGTATGTATATGATGTC
TAGATTCTCGAATTTTTGTTAAGAAGACGCACGATCGCGCAGTTGTACAG
AAAGAAGGGAACACAAAAATGCAAAGAAAGAAACCGAGGTGATGGTTGGT
TGAA

Coding sequence (CDS) from alignment at scaffold_11:420857..423710-

>mRNA_5724 ID=mRNA_5724|Name=jgi.p|Nanoce1779_2|590112|organism=Nannochloropsis oceanica|type=CDS|length=2052bp|location=Sequence derived from alignment at scaffold_11:420857..423710- (Nannochloropsis oceanica)
ATGCAAGACGTGACCATTCTGAGCTGGAACGTTGCCGCGCTCCGGTCGCT
CGCAAAGGACAAATATGTTGTTGGCAGGAGTAATTGGCTCAGGCTGAAGC
TGGTCGAGTTGGGAGAGCCTGCGTGTGTGTGCCTACAGGAGACAAAGGTG
CCACATGACATGCTTACCGAGGATGTGGCAATATTGGAGGGCTACCACGC
CTTCTTTTCGCGATGTCGAAGGGGTGCGGCACATGGGGGAGCTTACTCAG
GCGTCGTTACTTACGTTAAGAAGGAAATGCGGGTAGAGGCAGCGGTCGCG
GGCCTGATCTGCTGTTCGTACATTTCCAAGAGAGGCTTTAACGACCTACC
GAGCACAGCCGAAGGAAAGAGGTGTCCTTTTGCCTGCGCGGACTTTCGCG
AAGCCTGGGAGGCAGTCGTCTGTAAGTTAGACGACTGTAACTTAGACGAC
CAGCGGAGAGGGGTCGAGGATCGCGCGGCAACAGCGGCTACGGTTGGGTG
TGGGGAAGCAGGAGGTGAAGGTTGTAGAAGAGGAAAAGAATTTGGTGGAG
ACACACGGAAGGGGGTAGTGGCTCTAAAGGACGATTATAATGAAAAGACT
GGGCCAACATCCGAAGAGCTGGTTGAGGCAACGAGTCCCTTGGATTTACT
ACGCTCGATGGATAAGGAGGGCCGGGTGGTCATGACAGACCACGCGGCGT
TTGTACTTATCAACGTGTACGCTCCGTTTAACAGCCGGCCTGCGCGCGCT
CGTTTTAAAAAGGCTTTTAATGCTGCCCTAAAAGCCCGCGTTCAAACTCT
TTCTGCGGCGGGGCGGCAAGTAGTGCTCTGTGGAGATTTGAACGCCGTGT
CTCAAGCGCTAGATTCGGTCGAAGCGCCTACAGAAGAGCAACTTTTGGCC
TCACCATGGGTGCAGTGGATTCGAGATCTCCTGGCCCCGCGGGCTATGGA
ACTCAAGGGAGGGGTGGATGGGGATGAAGCAGGACGTACAAGAGACGGGG
CCGAGGTGGATCAGAAGCCGTGGGCAGGCCGTGCTCTCTTGATCGATACA
TTTCGCGTCCTCCATCCTAAGCGGCCAAACGCTTTCACTTGCTGGTGCAA
TCAGACAGGTGCCCGTCAAACCAATTTTGGGCGCAGGATAGATTACATAT
TAGCATCTGGGGGTCTCTGCGGGATCGGAGGGAGGGCGCCAGCTATCGCA
CAGCTGACAGAAGCCGAGGTACGGCAGGAGGTTGGTGGGAGCGATCACTG
CCCTGTCACTGCATGCTTTACTTTCGATATTTCTGCTACTTCACTCCCTT
CCACTGTTGACGATGAACACGGCGGCACTTTTACCCCTGCCTCCCCCACA
TCGCCTTTCCTCGCACCGGGAGAGGAACAAAAGGGCCTTCCGCCTTTGTG
TACATCCACATTTGCCGAGTTCCGCACCAAGCAGATTGGTATGCATGCGT
TCTTGGGGTCGTCAACCGCAGCCTTTCCTGATTTGATTGAACAAATTCCA
CGCACTTCTTACGGAGATAAGCATGCAGCAGGAAAACGCGATATGGCAGG
AAACGCTGGTGGCAAGAAACGCGCAGGGACACTTGAATCGATGACAACGC
GTCCGGCATCGAAGCTCCAGCTGACTCTCGGCCACTTTGGCATCTCCAAG
CAAATGAAAACCACGAATGGCGAGGGACCAGGTAGCATGGCCGCTGTTGC
TTCTTCGGCGGTCAGCGTGGACCTGACTATTGCCTCTTCTATGTTCTCCT
CCTCGTCAACAACTGAGGAGGTAGTGGCTGCACCCCTCTCTGACCCGACG
GGAGAAGCGAACAAGCGACAGATCTTCCTCGATGCATTTCGTCCCAAGAA
AGAGGAAGTCCCACGATGCAGTGGCCACGGCGAGCCTATGGCGAGACGAC
AAGTAAAGAAGACGGAGAGCGAGCACTGCGGAAGATACTTCTTTTGCTGC
ACCCGGCCAGAAGGAGCTCGCTGTAAGACCTTTTTGTGGGAGGACACGTT
GGCTGTGAGGGCAGGGGGAAAACGTGTGCGTGGACTGCTCAAGAAGGGAT
AG

Synonyms

Publications