jgi.p|Nanoce1779_2|528498, mRNA_5722 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|528498
Unique NamemRNA_5722
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length360
Alignment locationscaffold_11:413834..414193 -

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Properties
Property NameValue
TranscriptId528584
TrackFilteredModels2
ProteinId528498
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:413834..414193 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|528498gene_5722Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5722CDS_5722Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|528498mRNA_5722-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5722 ID=mRNA_5722|Name=jgi.p|Nanoce1779_2|528498|organism=Nannochloropsis oceanica|type=mRNA|length=360bp
ATGGTCAACAGTCCGAACGGGAATGGGGGCACGCTAGTGCTGCCGATCAT
CCCCAAGGACGGCATCGCGCGCATCGGTATCTACACGCTGGAGGAGCGGA
AGGTGCGCGTAGCCCGTTTCCAGGCGAAGCGCGGGCGTCGCGTATGGCGG
AAGAAGATTAAGTACGACTGCCGGAAGAAGCTTGCGGATAACCGCCCTCG
CGTCAAAGGCCGCTTTGTCCGCCGCGACGAAGAGATCGATATTATTGTCG
GGGGGGCTGTTGCCGCGGCAGAGGCGGCCGCGGCTGACGGCGTAGCGGAT
GGGGGCTCATCGGCTTTGCTTACTCAGTTGATGGATCTGGACGAGCTTCT
CGAGGACTAG
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protein sequence of jgi.p|Nanoce1779_2|528498

>mRNA_5722-protein ID=mRNA_5722-protein|Name=jgi.p|Nanoce1779_2|528498|organism=Nannochloropsis oceanica|type=polypeptide|length=120bp
MVNSPNGNGGTLVLPIIPKDGIARIGIYTLEERKVRVARFQAKRGRRVWR
KKIKYDCRKKLADNRPRVKGRFVRRDEEIDIIVGGAVAAAEAAAADGVAD
GGSSALLTQLMDLDELLED*
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mRNA from alignment at scaffold_11:413834..414193-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5722 ID=mRNA_5722|Name=jgi.p|Nanoce1779_2|528498|organism=Nannochloropsis oceanica|type=mRNA|length=360bp|location=Sequence derived from alignment at scaffold_11:413834..414193- (Nannochloropsis oceanica)
ATGGTCAACAGTCCGAACGGGAATGGGGGCACGCTAGTGCTGCCGATCAT
CCCCAAGGACGGCATCGCGCGCATCGGTATCTACACGCTGGAGGAGCGGA
AGGTGCGCGTAGCCCGTTTCCAGGCGAAGCGCGGGCGTCGCGTATGGCGG
AAGAAGATTAAGTACGACTGCCGGAAGAAGCTTGCGGATAACCGCCCTCG
CGTCAAAGGCCGCTTTGTCCGCCGCGACGAAGAGATCGATATTATTGTCG
GGGGGGCTGTTGCCGCGGCAGAGGCGGCCGCGGCTGACGGCGTAGCGGAT
GGGGGCTCATCGGCTTTGCTTACTCAGTTGATGGATCTGGACGAGCTTCT
CGAGGACTAG
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Coding sequence (CDS) from alignment at scaffold_11:413834..414193-

>mRNA_5722 ID=mRNA_5722|Name=jgi.p|Nanoce1779_2|528498|organism=Nannochloropsis oceanica|type=CDS|length=360bp|location=Sequence derived from alignment at scaffold_11:413834..414193- (Nannochloropsis oceanica)
ATGGTCAACAGTCCGAACGGGAATGGGGGCACGCTAGTGCTGCCGATCAT
CCCCAAGGACGGCATCGCGCGCATCGGTATCTACACGCTGGAGGAGCGGA
AGGTGCGCGTAGCCCGTTTCCAGGCGAAGCGCGGGCGTCGCGTATGGCGG
AAGAAGATTAAGTACGACTGCCGGAAGAAGCTTGCGGATAACCGCCCTCG
CGTCAAAGGCCGCTTTGTCCGCCGCGACGAAGAGATCGATATTATTGTCG
GGGGGGCTGTTGCCGCGGCAGAGGCGGCCGCGGCTGACGGCGTAGCGGAT
GGGGGCTCATCGGCTTTGCTTACTCAGTTGATGGATCTGGACGAGCTTCT
CGAGGACTAG
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Synonyms
Publications