jgi.p|Nanoce1779_2|528447, mRNA_5720 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|528447
Unique NamemRNA_5720
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length768
Alignment locationscaffold_11:408633..409400 -

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Properties
Property NameValue
TranscriptId528533
TrackFilteredModels2
ProteinId528447
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:408633..409400 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|528447gene_5720Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5720CDS_5720Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|528447mRNA_5720-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5720 ID=mRNA_5720|Name=jgi.p|Nanoce1779_2|528447|organism=Nannochloropsis oceanica|type=mRNA|length=768bp
ATGAACGGCAAAAACGTGGCGGAGAACCTGGCGATGATCCGCCTTCGAGT
GGAGGAGGCGGCCAAGGGCGCGGAAATGGTCCCTCTCCCCCGCCTAGTGG
CCGTGAGTAAGACCAAGCCGGGCGAGGCCTTGCAAGAGGCATACAACGCG
GGCCAGCGTCACTTTGGCGAGAACTATGTGAACGAGGTGTTGGAAAAGGC
GCGGGAGCTACCCAAAGACATTAAGTGGCATTTTATAGGACACTTGCAAT
CCAACAAGGTCAAACCTTTGGTGGCCCAGGTCGCCAACTTGTGGATGGTA
GAGGCGGTGGACTCGTCTAAGCTCGCCGACCGTCTCCAGGCTGCCGCAGC
CACCGTCCTCGAAACGGAACGCAAAGGTGAGCCTCTCAAAGTACTGGTTC
AAGTGGACACGAGCGGAGAAGACACCAAGTCAGGCGTGGCGGCCGACGAG
GCGGTGGAGATTGCGCAGCATATCCTAGCCAACTGCCCGGCCCTCAGCTT
TGCGGGTGTCATGACTATCGGCGCCCCGGGAGACCTGACATGCTTTGACA
AGTTAGTGGAGACCCGACAACGTGTTGCGAGCGCTACGGGCTTGGAGGCG
GCGTCACTAGAACTGAGTATGGGCATGTCGGGCGACTTTGAGGAGGCTAT
TGCCCGCGGCAGCACCAACGTGCGTGTGGGCAGCTTAATTTTTGGAGAGC
GGTCTTATCCGCCGAGGAAGGGTACATCAGAAAGCTCACCGACAGCGACA
ACGACGACATTGAAGTAG
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protein sequence of jgi.p|Nanoce1779_2|528447

>mRNA_5720-protein ID=mRNA_5720-protein|Name=jgi.p|Nanoce1779_2|528447|organism=Nannochloropsis oceanica|type=polypeptide|length=256bp
MNGKNVAENLAMIRLRVEEAAKGAEMVPLPRLVAVSKTKPGEALQEAYNA
GQRHFGENYVNEVLEKARELPKDIKWHFIGHLQSNKVKPLVAQVANLWMV
EAVDSSKLADRLQAAAATVLETERKGEPLKVLVQVDTSGEDTKSGVAADE
AVEIAQHILANCPALSFAGVMTIGAPGDLTCFDKLVETRQRVASATGLEA
ASLELSMGMSGDFEEAIARGSTNVRVGSLIFGERSYPPRKGTSESSPTAT
TTTLK*
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mRNA from alignment at scaffold_11:408633..409400-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5720 ID=mRNA_5720|Name=jgi.p|Nanoce1779_2|528447|organism=Nannochloropsis oceanica|type=mRNA|length=768bp|location=Sequence derived from alignment at scaffold_11:408633..409400- (Nannochloropsis oceanica)
ATGAACGGCAAAAACGTGGCGGAGAACCTGGCGATGATCCGCCTTCGAGT
GGAGGAGGCGGCCAAGGGCGCGGAAATGGTCCCTCTCCCCCGCCTAGTGG
CCGTGAGTAAGACCAAGCCGGGCGAGGCCTTGCAAGAGGCATACAACGCG
GGCCAGCGTCACTTTGGCGAGAACTATGTGAACGAGGTGTTGGAAAAGGC
GCGGGAGCTACCCAAAGACATTAAGTGGCATTTTATAGGACACTTGCAAT
CCAACAAGGTCAAACCTTTGGTGGCCCAGGTCGCCAACTTGTGGATGGTA
GAGGCGGTGGACTCGTCTAAGCTCGCCGACCGTCTCCAGGCTGCCGCAGC
CACCGTCCTCGAAACGGAACGCAAAGGTGAGCCTCTCAAAGTACTGGTTC
AAGTGGACACGAGCGGAGAAGACACCAAGTCAGGCGTGGCGGCCGACGAG
GCGGTGGAGATTGCGCAGCATATCCTAGCCAACTGCCCGGCCCTCAGCTT
TGCGGGTGTCATGACTATCGGCGCCCCGGGAGACCTGACATGCTTTGACA
AGTTAGTGGAGACCCGACAACGTGTTGCGAGCGCTACGGGCTTGGAGGCG
GCGTCACTAGAACTGAGTATGGGCATGTCGGGCGACTTTGAGGAGGCTAT
TGCCCGCGGCAGCACCAACGTGCGTGTGGGCAGCTTAATTTTTGGAGAGC
GGTCTTATCCGCCGAGGAAGGGTACATCAGAAAGCTCACCGACAGCGACA
ACGACGACATTGAAGTAG
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Coding sequence (CDS) from alignment at scaffold_11:408633..409400-

>mRNA_5720 ID=mRNA_5720|Name=jgi.p|Nanoce1779_2|528447|organism=Nannochloropsis oceanica|type=CDS|length=768bp|location=Sequence derived from alignment at scaffold_11:408633..409400- (Nannochloropsis oceanica)
ATGAACGGCAAAAACGTGGCGGAGAACCTGGCGATGATCCGCCTTCGAGT
GGAGGAGGCGGCCAAGGGCGCGGAAATGGTCCCTCTCCCCCGCCTAGTGG
CCGTGAGTAAGACCAAGCCGGGCGAGGCCTTGCAAGAGGCATACAACGCG
GGCCAGCGTCACTTTGGCGAGAACTATGTGAACGAGGTGTTGGAAAAGGC
GCGGGAGCTACCCAAAGACATTAAGTGGCATTTTATAGGACACTTGCAAT
CCAACAAGGTCAAACCTTTGGTGGCCCAGGTCGCCAACTTGTGGATGGTA
GAGGCGGTGGACTCGTCTAAGCTCGCCGACCGTCTCCAGGCTGCCGCAGC
CACCGTCCTCGAAACGGAACGCAAAGGTGAGCCTCTCAAAGTACTGGTTC
AAGTGGACACGAGCGGAGAAGACACCAAGTCAGGCGTGGCGGCCGACGAG
GCGGTGGAGATTGCGCAGCATATCCTAGCCAACTGCCCGGCCCTCAGCTT
TGCGGGTGTCATGACTATCGGCGCCCCGGGAGACCTGACATGCTTTGACA
AGTTAGTGGAGACCCGACAACGTGTTGCGAGCGCTACGGGCTTGGAGGCG
GCGTCACTAGAACTGAGTATGGGCATGTCGGGCGACTTTGAGGAGGCTAT
TGCCCGCGGCAGCACCAACGTGCGTGTGGGCAGCTTAATTTTTGGAGAGC
GGTCTTATCCGCCGAGGAAGGGTACATCAGAAAGCTCACCGACAGCGACA
ACGACGACATTGAAGTAG
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Synonyms
Publications