jgi.p|Nanoce1779_2|627997, mRNA_572 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|627997
Unique NamemRNA_572
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length858
Alignment locationscaffold_3:1397192..1398110 +

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Properties
Property NameValue
TranscriptId628083
TrackFilteredModels2
ProteinId627997
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:1397192..1398110 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|627997gene_572Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|627997mRNA_572-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_572CDS_572Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_572 ID=mRNA_572|Name=jgi.p|Nanoce1779_2|627997|organism=Nannochloropsis oceanica|type=mRNA|length=858bp
ATGGATTTCCCTACACAGGGTCCCCAGCCCTTCGTCATTTTGGCTTTTCA
GCGCACGGGGTCAAATTTCCTGTGCGGCAAGCTTCATAACCATGCTGAAG
TTGTTATGCACAACGAGCTATTTAATAATGCAAAGATTTGGACCTATATG
GACAAGGACAAGCTCGCGAACCCGACCTGTCGCTGGGATGTTTTTAGCCG
TGATAAAAACCCTATGGCTCTTCTATACGACATTTTCCTAAGAGAGCCAC
TGAAGAAGAAGTGTTGGAAAGCAGTGGGATTCAAACTCTTCCCAGACCAC
TGGACCGACGATAACGATGAAATCTTGAAGCGGGTGCTCGCAGATAGGCG
GATTAAGAAGATAGTCCTCCGGCGGGAGGATTACCTAGCAGTCTATGCAT
CCAAGCTGCGTGCCGATAAAACAGGCGCATACATCAAGAAGTCGCTCGAT
GGTATTCTGCTCCATATCGACCTCTCTGCATTCGATAAATTTATTAGATA
CTATGATGCCTGGTACGCTGATTATGAGGATTATCTCCAGGGTCAGCACG
TCCTGAGGATCACCTACGAAAAACTATGCGCCCATGGGTCTGTCGGTGAC
GCGGTGATTCGTGAAGTACTAGATTTCCTTGAGGTAGACAGCAGCGTTAC
GCCCTCCCGGCTAGCTGTAACCGAGAAGGAGACATCTGATCCCTGCTCTC
AAGCAATTGTGAATTACGAAGAGTTACGAAAGGCCTTCAAGCATCACCCA
AAGTGTATACAGATGCCGTGGAACGACGAGTGATGCTGCTGACAGCGATG
GATGTCATAGGGAGAAAGGAACGTGTTGGAGCAGAGGGGCAGGGAGTACA
TGTAAAGG
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protein sequence of jgi.p|Nanoce1779_2|627997

>mRNA_572-protein ID=mRNA_572-protein|Name=jgi.p|Nanoce1779_2|627997|organism=Nannochloropsis oceanica|type=polypeptide|length=261bp
MDFPTQGPQPFVILAFQRTGSNFLCGKLHNHAEVVMHNELFNNAKIWTYM
DKDKLANPTCRWDVFSRDKNPMALLYDIFLREPLKKKCWKAVGFKLFPDH
WTDDNDEILKRVLADRRIKKIVLRREDYLAVYASKLRADKTGAYIKKSLD
GILLHIDLSAFDKFIRYYDAWYADYEDYLQGQHVLRITYEKLCAHGSVGD
AVIREVLDFLEVDSSVTPSRLAVTEKETSDPCSQAIVNYEELRKAFKHHP
KCIQMPWNDE*
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mRNA from alignment at scaffold_3:1397192..1398110+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_572 ID=mRNA_572|Name=jgi.p|Nanoce1779_2|627997|organism=Nannochloropsis oceanica|type=mRNA|length=919bp|location=Sequence derived from alignment at scaffold_3:1397192..1398110+ (Nannochloropsis oceanica)
ATGGATTTCCCTACACAGGGTCCCCAGCCCTTCGTCATTTTGGCTTTTCA
GCGCACGGGGTCAAATTTCCTGTGCGGCAAGCTTCATAACCATGCTGAAG
TTGTTATGCACAACGAGCTATTTAATAATGCAAAGATTTGGACCTATATG
GACAAGGACAAGCTCGCGAACCCGACCTGTCGCTGGGATGTTTTTAGCCG
TGATAAAAACCCTATGGCTCTTCTATACGACATTTTCCTAAGAGAGCCAC
TGAAGAAGAAGTGTTGGAAAGCAGTGGGATTCAAACTCTTCCCAGACCAC
TGGACCGACGATAACGATGAAATCTTGAAGCGGGTGCTCGCAGATAGGCG
GATTAAGAAGATAGTCCTCCGGCGGGAGGATTACCTAGCAGTCTATGCAT
CCAAGCTGCGTGCCGATAAAACAGGCGCATACATCAAGAAGTCGCTCGAT
GGTATTCTGCTCCATATCGACCTCTCTGCATTCGATAAATTTATTAGATA
CTATGATGCCTGGTACGCTGATTATGAGGATTATCTCCAGGTAAGCGGAT
ATGAATAGGAGTATGCTGTTCCGTCTATCACACACATGCTGCAATACACA
GGGTCAGCACGTCCTGAGGATCACCTACGAAAAACTATGCGCCCATGGGT
CTGTCGGTGACGCGGTGATTCGTGAAGTACTAGATTTCCTTGAGGTAGAC
AGCAGCGTTACGCCCTCCCGGCTAGCTGTAACCGAGAAGGAGACATCTGA
TCCCTGCTCTCAAGCAATTGTGAATTACGAAGAGTTACGAAAGGCCTTCA
AGCATCACCCAAAGTGTATACAGATGCCGTGGAACGACGAGTGATGCTGC
TGACAGCGATGGATGTCATAGGGAGAAAGGAACGTGTTGGAGCAGAGGGG
CAGGGAGTACATGTAAAGG
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Coding sequence (CDS) from alignment at scaffold_3:1397192..1398110+

>mRNA_572 ID=mRNA_572|Name=jgi.p|Nanoce1779_2|627997|organism=Nannochloropsis oceanica|type=CDS|length=1566bp|location=Sequence derived from alignment at scaffold_3:1397192..1398110+ (Nannochloropsis oceanica)
ATGGATTTCCCTACACAGGGTCCCCAGCCCTTCGTCATTTTGGCTTTTCA
GCGCACGGGGTCAAATTTCCTGTGCGGCAAGCTTCATAACCATGCTGAAG
TTGTTATGCACAACGAGCTATTTAATAATGCAAAGATTTGGACCTATATG
GACAAGGACAAGCTCGCGAACCCGACCTGTCGCTGGGATGTTTTTAGCCG
TGATAAAAACCCTATGGCTCTTCTATACGACATTTTCCTAAGAGAGCCAC
TGAAGAAGAAGTGTTGGAAAGCAGTGGGATTCAAACTCTTCCCAGACCAC
TGGACCGACGATAACGATGAAATCTTGAAGCGGGTGCTCGCAGATAGGCG
GATTAAGAAGATAGTCCTCCGGCGGGAGGATTACCTAGCAGTCTATGCAT
CCAAGCTGCGTGCCGATAAAACAGGCGCATACATCAAGAAGTCGCTCGAT
GGTATTCTGCTCCATATCGACCTCTCTGCATTCGATAAATTTATTAGATA
CTATGATGCCTGGTACGCTGATTATGAGGATTATCTCCAGGGTCAGCACG
TCCTGAGGATCACCTACGAAAAACTATGCGCCCATGGGTCTGTCGGTGAC
GCGGTGATTCGTGAAGTACTAGATTTCCTTGAGGTAGACAGCAGCGTTAC
GCCCTCCCGGCTAGCTGTAACCGAGAAGGAGACATCTGATCCCTGCTCTC
AAGCAATTGTGAATTACGAAGAGTTACGAAAGGCCTTCAAGCATCACCCA
AAGTGTATACAGATGCCGTGGAACGACGAGTGAATGGATTTCCCTACACA
GGGTCCCCAGCCCTTCGTCATTTTGGCTTTTCAGCGCACGGGGTCAAATT
TCCTGTGCGGCAAGCTTCATAACCATGCTGAAGTTGTTATGCACAACGAG
CTATTTAATAATGCAAAGATTTGGACCTATATGGACAAGGACAAGCTCGC
GAACCCGACCTGTCGCTGGGATGTTTTTAGCCGTGATAAAAACCCTATGG
CTCTTCTATACGACATTTTCCTAAGAGAGCCACTGAAGAAGAAGTGTTGG
AAAGCAGTGGGATTCAAACTCTTCCCAGACCACTGGACCGACGATAACGA
TGAAATCTTGAAGCGGGTGCTCGCAGATAGGCGGATTAAGAAGATAGTCC
TCCGGCGGGAGGATTACCTAGCAGTCTATGCATCCAAGCTGCGTGCCGAT
AAAACAGGCGCATACATCAAGAAGTCGCTCGATGGTATTCTGCTCCATAT
CGACCTCTCTGCATTCGATAAATTTATTAGATACTATGATGCCTGGTACG
CTGATTATGAGGATTATCTCCAGGGTCAGCACGTCCTGAGGATCACCTAC
GAAAAACTATGCGCCCATGGGTCTGTCGGTGACGCGGTGATTCGTGAAGT
ACTAGATTTCCTTGAGGTAGACAGCAGCGTTACGCCCTCCCGGCTAGCTG
TAACCGAGAAGGAGACATCTGATCCCTGCTCTCAAGCAATTGTGAATTAC
GAAGAGTTACGAAAGGCCTTCAAGCATCACCCAAAGTGTATACAGATGCC
GTGGAACGACGAGTGA
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Synonyms
Publications