jgi.p|Nanoce1779_2|590098, mRNA_5719 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|590098
Unique NamemRNA_5719
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1356
Alignment locationscaffold_11:407199..408554 +

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Properties
Property NameValue
TranscriptId590184
TrackFilteredModels2
ProteinId590098
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:407199..408554 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590098gene_5719Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590098mRNA_5719-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5719CDS_5719Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5719 ID=mRNA_5719|Name=jgi.p|Nanoce1779_2|590098|organism=Nannochloropsis oceanica|type=mRNA|length=1356bp
TGACTTTAGCACCGTGAAAGCCCCTCACACACCCTTCCAAGTTGTTCTTT
TGCGGACCCCGCCGCCGCCCCGGCCCTTAAGTGTGCCCGCGATGAGATAG
GAAGGCTCGGAAAGGCAGATATGATGACATAGAGACTGATATTATGAGGA
TCACAGGCGCTAGTAAGGTTCTTGGAGACGTCTCACGAGGCGTTGTCACC
CCTAATGACCATTCACCTGAAATATGACGGTCGATTCCTTTGTCATCCCC
CTCCTACCTGACTTGCAACGCCCCTATTAATTTTGGAACGAGAACCAAAC
ATCATTCCTACCGCTGCGCACTGCTATGAGAGGCAGCCACTCGTCTTTAT
CATGCCAACGTCTGATGCTTTATCCCCGGAATCGGAATGGGCAAAGCTGG
AGCATAGGTACTGTTTATGAGTAGTACGAGCGCCCTCATTTTTCACTCCT
TTCCCTTACCAAAATTTGAGCCCCACATTTTACATTCAGAATCTATCGCA
TCTAGTTCGCCACGCAAAAGCATGAGGCGCTTTATGTTTGCGACCGCCGC
CGCTACGTGCTCCTTGACCATGCTCATTCTCCTCTGCCCAACCCATGCTA
TTTACGATGATTTTGACGGCTTTCTCCACTATCATGAGGTTGATGCTACA
GCAGATGAAATCATATTCGATGCATCGGATATGATTCTGCCTCCTGATGT
GTGGAGTGCCGTTTGTGAGGAGATTCCTCGCTGCGTGGCGTTCAACAACA
AAGGTTTTCTCAAGGCCTTTCCCCGCAACGAGTCTGTGGACACCTACATC
TCCAAGACACACTGCGGTGTGCATGGCAAGGCGAACCTGACGGAAGGAAG
CTGCCTGAAGCCAAATTCACAGTTTGTGCACTGCCACGACGACCGGGGCA
ACCTGGACACCTTTTACAATGCTAAGGCGAATTATCCCCTGCCGCCGCAT
TTGGTAGCCGATGCCTGCCGCCGTGACAATCGTTGTGCAGGCTTTATGGT
CACGCAGGATCGACAGATTGGAGTGCTGCTGGAGCACTTCGTCTCTCCCC
CTGTCACGGACATCTGGACACGCGTACCAATGCAGAGCAATGCCACGCCT
ACCACGACGGGAATTTCACCATCTCTGCGAGGGCCCTACCGTTTGCGCTT
GAGTGAAGAGCACTGAAATAGTATAGAAAGTGGTGGGGAAAACTAAGACA
AGGCGCAGGAGTAACTACGGGGGGTCGGTAAAGAGACGCTGTCTGAAGCT
GTAGTACGTTCATTCGAAAAAGCAGAGGCAATGATCAGGAGGGAATCTCC
CCACAACATTGCGTGAATAAGCTGAGAGACGAAGTTTTCCATAACTAGAA
GAAAGA
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protein sequence of jgi.p|Nanoce1779_2|590098

>mRNA_5719-protein ID=mRNA_5719-protein|Name=jgi.p|Nanoce1779_2|590098|organism=Nannochloropsis oceanica|type=polypeptide|length=250bp
MSSTSALIFHSFPLPKFEPHILHSESIASSSPRKSMRRFMFATAAATCSL
TMLILLCPTHAIYDDFDGFLHYHEVDATADEIIFDASDMILPPDVWSAVC
EEIPRCVAFNNKGFLKAFPRNESVDTYISKTHCGVHGKANLTEGSCLKPN
SQFVHCHDDRGNLDTFYNAKANYPLPPHLVADACRRDNRCAGFMVTQDRQ
IGVLLEHFVSPPVTDIWTRVPMQSNATPTTTGISPSLRGPYRLRLSEEH*
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mRNA from alignment at scaffold_11:407199..408554+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5719 ID=mRNA_5719|Name=jgi.p|Nanoce1779_2|590098|organism=Nannochloropsis oceanica|type=mRNA|length=1356bp|location=Sequence derived from alignment at scaffold_11:407199..408554+ (Nannochloropsis oceanica)
TGACTTTAGCACCGTGAAAGCCCCTCACACACCCTTCCAAGTTGTTCTTT
TGCGGACCCCGCCGCCGCCCCGGCCCTTAAGTGTGCCCGCGATGAGATAG
GAAGGCTCGGAAAGGCAGATATGATGACATAGAGACTGATATTATGAGGA
TCACAGGCGCTAGTAAGGTTCTTGGAGACGTCTCACGAGGCGTTGTCACC
CCTAATGACCATTCACCTGAAATATGACGGTCGATTCCTTTGTCATCCCC
CTCCTACCTGACTTGCAACGCCCCTATTAATTTTGGAACGAGAACCAAAC
ATCATTCCTACCGCTGCGCACTGCTATGAGAGGCAGCCACTCGTCTTTAT
CATGCCAACGTCTGATGCTTTATCCCCGGAATCGGAATGGGCAAAGCTGG
AGCATAGGTACTGTTTATGAGTAGTACGAGCGCCCTCATTTTTCACTCCT
TTCCCTTACCAAAATTTGAGCCCCACATTTTACATTCAGAATCTATCGCA
TCTAGTTCGCCACGCAAAAGCATGAGGCGCTTTATGTTTGCGACCGCCGC
CGCTACGTGCTCCTTGACCATGCTCATTCTCCTCTGCCCAACCCATGCTA
TTTACGATGATTTTGACGGCTTTCTCCACTATCATGAGGTTGATGCTACA
GCAGATGAAATCATATTCGATGCATCGGATATGATTCTGCCTCCTGATGT
GTGGAGTGCCGTTTGTGAGGAGATTCCTCGCTGCGTGGCGTTCAACAACA
AAGGTTTTCTCAAGGCCTTTCCCCGCAACGAGTCTGTGGACACCTACATC
TCCAAGACACACTGCGGTGTGCATGGCAAGGCGAACCTGACGGAAGGAAG
CTGCCTGAAGCCAAATTCACAGTTTGTGCACTGCCACGACGACCGGGGCA
ACCTGGACACCTTTTACAATGCTAAGGCGAATTATCCCCTGCCGCCGCAT
TTGGTAGCCGATGCCTGCCGCCGTGACAATCGTTGTGCAGGCTTTATGGT
CACGCAGGATCGACAGATTGGAGTGCTGCTGGAGCACTTCGTCTCTCCCC
CTGTCACGGACATCTGGACACGCGTACCAATGCAGAGCAATGCCACGCCT
ACCACGACGGGAATTTCACCATCTCTGCGAGGGCCCTACCGTTTGCGCTT
GAGTGAAGAGCACTGAAATAGTATAGAAAGTGGTGGGGAAAACTAAGACA
AGGCGCAGGAGTAACTACGGGGGGTCGGTAAAGAGACGCTGTCTGAAGCT
GTAGTACGTTCATTCGAAAAAGCAGAGGCAATGATCAGGAGGGAATCTCC
CCACAACATTGCGTGAATAAGCTGAGAGACGAAGTTTTCCATAACTAGAA
GAAAGA
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Coding sequence (CDS) from alignment at scaffold_11:407199..408554+

>mRNA_5719 ID=mRNA_5719|Name=jgi.p|Nanoce1779_2|590098|organism=Nannochloropsis oceanica|type=CDS|length=750bp|location=Sequence derived from alignment at scaffold_11:407199..408554+ (Nannochloropsis oceanica)
ATGAGTAGTACGAGCGCCCTCATTTTTCACTCCTTTCCCTTACCAAAATT
TGAGCCCCACATTTTACATTCAGAATCTATCGCATCTAGTTCGCCACGCA
AAAGCATGAGGCGCTTTATGTTTGCGACCGCCGCCGCTACGTGCTCCTTG
ACCATGCTCATTCTCCTCTGCCCAACCCATGCTATTTACGATGATTTTGA
CGGCTTTCTCCACTATCATGAGGTTGATGCTACAGCAGATGAAATCATAT
TCGATGCATCGGATATGATTCTGCCTCCTGATGTGTGGAGTGCCGTTTGT
GAGGAGATTCCTCGCTGCGTGGCGTTCAACAACAAAGGTTTTCTCAAGGC
CTTTCCCCGCAACGAGTCTGTGGACACCTACATCTCCAAGACACACTGCG
GTGTGCATGGCAAGGCGAACCTGACGGAAGGAAGCTGCCTGAAGCCAAAT
TCACAGTTTGTGCACTGCCACGACGACCGGGGCAACCTGGACACCTTTTA
CAATGCTAAGGCGAATTATCCCCTGCCGCCGCATTTGGTAGCCGATGCCT
GCCGCCGTGACAATCGTTGTGCAGGCTTTATGGTCACGCAGGATCGACAG
ATTGGAGTGCTGCTGGAGCACTTCGTCTCTCCCCCTGTCACGGACATCTG
GACACGCGTACCAATGCAGAGCAATGCCACGCCTACCACGACGGGAATTT
CACCATCTCTGCGAGGGCCCTACCGTTTGCGCTTGAGTGAAGAGCACTGA
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Synonyms
Publications