jgi.p|Nanoce1779_2|521406, mRNA_5718 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|521406
Unique NamemRNA_5718
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length711
Alignment locationscaffold_11:405462..406172 -

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Properties
Property NameValue
TranscriptId521492
TrackFilteredModels2
ProteinId521406
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:405462..406172 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|521406gene_5718Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5718CDS_5718Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|521406mRNA_5718-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5718 ID=mRNA_5718|Name=jgi.p|Nanoce1779_2|521406|organism=Nannochloropsis oceanica|type=mRNA|length=711bp
ATAGCCGGAAAGACCCGCAGCGGCGAGCTGACGGCCATCATGGGCCCCTC
AGGTGCAGGCAAGACGACACTCTTAGAGTGTATCTCCCTCCGCAACCGCA
AATTTGAGGGAGCCGTGCACTACGACAATCGCGACCCCACGGGGGAGTTC
TTCACATTATCCGTGCTCGTCCACCAGAAGGAGCTGTTGTTTGGGTTCAT
GACCCCCCGGGAGCACTTGCTCTTCCACGCCATTGCCCGCATGAGTAGGA
CGCACACCAGCAAGCAGATTCACGACCGTGTCGAGGAGGTCCTGAAGGAC
GTCAAGCTTGAGAAATGCGCAGACACAATCGTTGGTGGCACCGACCCTAT
CTATATGCGCAAAGGCCTGTCGGGCGGGGAGCGAAAGCGCCTCTCCATCG
CTGCCGAGCTTCTGCTTGCCCCCCTCCTTATCTTTTTGGATGAGCCTTCA
TCCGGCCTGGACTCTGTGATGTCAGATTCTATCTTTGCGACCATGAAGGA
CCTGACCCAGCAGGGGCGGATCGTCATGGCCTCGGTGCATTGCCCGTCCT
CGGAAATGTGCCAGCAGTTCACTCACATTCTCCTCCTCACCTGCGACGGC
CGTCTCGCCTATCATGGCCGGCAGGACGCGGCCATCAAGTACTTCAATTC
TATGGGTTACCGGTGCCCCGACAACTACAACCCAGCCGACTTCTACCTCA
AGCTCATCTCG
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protein sequence of jgi.p|Nanoce1779_2|521406

>mRNA_5718-protein ID=mRNA_5718-protein|Name=jgi.p|Nanoce1779_2|521406|organism=Nannochloropsis oceanica|type=polypeptide|length=237bp
IAGKTRSGELTAIMGPSGAGKTTLLECISLRNRKFEGAVHYDNRDPTGEF
FTLSVLVHQKELLFGFMTPREHLLFHAIARMSRTHTSKQIHDRVEEVLKD
VKLEKCADTIVGGTDPIYMRKGLSGGERKRLSIAAELLLAPLLIFLDEPS
SGLDSVMSDSIFATMKDLTQQGRIVMASVHCPSSEMCQQFTHILLLTCDG
RLAYHGRQDAAIKYFNSMGYRCPDNYNPADFYLKLIS
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mRNA from alignment at scaffold_11:405462..406172-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5718 ID=mRNA_5718|Name=jgi.p|Nanoce1779_2|521406|organism=Nannochloropsis oceanica|type=mRNA|length=711bp|location=Sequence derived from alignment at scaffold_11:405462..406172- (Nannochloropsis oceanica)
ATAGCCGGAAAGACCCGCAGCGGCGAGCTGACGGCCATCATGGGCCCCTC
AGGTGCAGGCAAGACGACACTCTTAGAGTGTATCTCCCTCCGCAACCGCA
AATTTGAGGGAGCCGTGCACTACGACAATCGCGACCCCACGGGGGAGTTC
TTCACATTATCCGTGCTCGTCCACCAGAAGGAGCTGTTGTTTGGGTTCAT
GACCCCCCGGGAGCACTTGCTCTTCCACGCCATTGCCCGCATGAGTAGGA
CGCACACCAGCAAGCAGATTCACGACCGTGTCGAGGAGGTCCTGAAGGAC
GTCAAGCTTGAGAAATGCGCAGACACAATCGTTGGTGGCACCGACCCTAT
CTATATGCGCAAAGGCCTGTCGGGCGGGGAGCGAAAGCGCCTCTCCATCG
CTGCCGAGCTTCTGCTTGCCCCCCTCCTTATCTTTTTGGATGAGCCTTCA
TCCGGCCTGGACTCTGTGATGTCAGATTCTATCTTTGCGACCATGAAGGA
CCTGACCCAGCAGGGGCGGATCGTCATGGCCTCGGTGCATTGCCCGTCCT
CGGAAATGTGCCAGCAGTTCACTCACATTCTCCTCCTCACCTGCGACGGC
CGTCTCGCCTATCATGGCCGGCAGGACGCGGCCATCAAGTACTTCAATTC
TATGGGTTACCGGTGCCCCGACAACTACAACCCAGCCGACTTCTACCTCA
AGCTCATCTCG
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Coding sequence (CDS) from alignment at scaffold_11:405462..406172-

>mRNA_5718 ID=mRNA_5718|Name=jgi.p|Nanoce1779_2|521406|organism=Nannochloropsis oceanica|type=CDS|length=711bp|location=Sequence derived from alignment at scaffold_11:405462..406172- (Nannochloropsis oceanica)
ATAGCCGGAAAGACCCGCAGCGGCGAGCTGACGGCCATCATGGGCCCCTC
AGGTGCAGGCAAGACGACACTCTTAGAGTGTATCTCCCTCCGCAACCGCA
AATTTGAGGGAGCCGTGCACTACGACAATCGCGACCCCACGGGGGAGTTC
TTCACATTATCCGTGCTCGTCCACCAGAAGGAGCTGTTGTTTGGGTTCAT
GACCCCCCGGGAGCACTTGCTCTTCCACGCCATTGCCCGCATGAGTAGGA
CGCACACCAGCAAGCAGATTCACGACCGTGTCGAGGAGGTCCTGAAGGAC
GTCAAGCTTGAGAAATGCGCAGACACAATCGTTGGTGGCACCGACCCTAT
CTATATGCGCAAAGGCCTGTCGGGCGGGGAGCGAAAGCGCCTCTCCATCG
CTGCCGAGCTTCTGCTTGCCCCCCTCCTTATCTTTTTGGATGAGCCTTCA
TCCGGCCTGGACTCTGTGATGTCAGATTCTATCTTTGCGACCATGAAGGA
CCTGACCCAGCAGGGGCGGATCGTCATGGCCTCGGTGCATTGCCCGTCCT
CGGAAATGTGCCAGCAGTTCACTCACATTCTCCTCCTCACCTGCGACGGC
CGTCTCGCCTATCATGGCCGGCAGGACGCGGCCATCAAGTACTTCAATTC
TATGGGTTACCGGTGCCCCGACAACTACAACCCAGCCGACTTCTACCTCA
AGCTCATCTCG
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Synonyms
Publications