jgi.p|Nanoce1779_2|590081, mRNA_5713 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|590081
Unique NamemRNA_5713
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1193
Alignment locationscaffold_11:388461..389653 -

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Properties
Property NameValue
TranscriptId590167
TrackFilteredModels2
ProteinId590081
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:388461..389653 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590081gene_5713Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590081mRNA_5713-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5713CDS_5713Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5713 ID=mRNA_5713|Name=jgi.p|Nanoce1779_2|590081|organism=Nannochloropsis oceanica|type=mRNA|length=1193bp
AGCAAGGTGCAGGTGCCACGCACACTATCGCAAGCCAAAATCGGGGTGGC
ACATATTTTAGCAGCAGCAGCAGCAGCAGCAGCGGCGGTAGTACCAGCCG
CAGCCATTACGGGCCGCGTTCGAGCAAGGCTCGCAGCAACCGCCGCCGTC
GCCCTTCCCACCTCGCTTCAACTGCGACCGTGATCGACGGGCCTTCAGAC
GTAGATGACACGCAAAGCAACAGTGCCTCTGTTGTAGACGACGAAAACCT
TGAGGATACATTGAATGTTGCATCTGATCCTATTTACGGGGGTAGCCCCA
AGGAAGAGCTGATCAACCTCGTCACTGGCGGCTTCCTGGATTCATCTTCT
CCAATGAAGCGCGCGTCAGTCAACGAATTGTTGCTGCGCCTAGAAGCTCT
AAATCCGACGCCGATACCCGCATACTCGCCTTTGCTTAATGGGGCATGGG
AGTTCTTGTGGACGGGTGGCATATCACCCGGTGTTCTGGGTTTGCAACTT
GCATCGAGATTGTCTAGCTACGCTAGCGGTGCAGTCGAGGTAGGGGAAAC
CACGCTCACGATCAGCCGGGCCCAACCAAGAGTAGAGGTGAAGACGTCGA
TCAAAGTGTTTGGAAGGGAGAACGCAATTACGATTCGCACGAACCTGGAA
CCGGCAACAGAATTGCGCCTGGATGAGACGTACACGGAGGCCAGCATGGG
CAGTCTCCGGGTACCCTTTCCTGACCAAAAGCAACTCTTTCGACGCCCTC
TTTTTATTTCGTACTTGGATAATGACCTGCTTGTGGTACGTGATAGTTTT
GGTGCGCCCGACGTGTTAGTAAGGAAGGACAAGGCCTTCGTGAGCAACAC
GGGCGTGCCGTCTGCGACTGACGACGATACGTCTCCTGGTGCAGGGTGAA
GGAGCGAGGGATTGCAAATTCAAACGAAAGAGAGGGAGAGCCATACCATG
AGACGGCGAGATTTTTTTCACAAGGATAACAGAAATCGAGGCTGATGCCA
CATGCATTTTTATTTCTCACTTGGAGGGAAATAAGCGAGAAGGACACAGT
TTATCGTTTATGAGGCAGAGCAGGCCATGGCAATGCGGTCCGGAACTGGA
AAGAAGGTCTACAAGTTAGAAAACAGGCATCAGAGGTTCATTTCCAAACC
AAAAAAAACACTCGAAAGAATAATGCGCCCGTGCTCGATCCGA
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protein sequence of jgi.p|Nanoce1779_2|590081

>mRNA_5713-protein ID=mRNA_5713-protein|Name=jgi.p|Nanoce1779_2|590081|organism=Nannochloropsis oceanica|type=polypeptide|length=182bp
MKRASVNELLLRLEALNPTPIPAYSPLLNGAWEFLWTGGISPGVLGLQLA
SRLSSYASGAVEVGETTLTISRAQPRVEVKTSIKVFGRENAITIRTNLEP
ATELRLDETYTEASMGSLRVPFPDQKQLFRRPLFISYLDNDLLVVRDSFG
APDVLVRKDKAFVSNTGVPSATDDDTSPGAG*
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mRNA from alignment at scaffold_11:388461..389653-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5713 ID=mRNA_5713|Name=jgi.p|Nanoce1779_2|590081|organism=Nannochloropsis oceanica|type=mRNA|length=1193bp|location=Sequence derived from alignment at scaffold_11:388461..389653- (Nannochloropsis oceanica)
AGCAAGGTGCAGGTGCCACGCACACTATCGCAAGCCAAAATCGGGGTGGC
ACATATTTTAGCAGCAGCAGCAGCAGCAGCAGCGGCGGTAGTACCAGCCG
CAGCCATTACGGGCCGCGTTCGAGCAAGGCTCGCAGCAACCGCCGCCGTC
GCCCTTCCCACCTCGCTTCAACTGCGACCGTGATCGACGGGCCTTCAGAC
GTAGATGACACGCAAAGCAACAGTGCCTCTGTTGTAGACGACGAAAACCT
TGAGGATACATTGAATGTTGCATCTGATCCTATTTACGGGGGTAGCCCCA
AGGAAGAGCTGATCAACCTCGTCACTGGCGGCTTCCTGGATTCATCTTCT
CCAATGAAGCGCGCGTCAGTCAACGAATTGTTGCTGCGCCTAGAAGCTCT
AAATCCGACGCCGATACCCGCATACTCGCCTTTGCTTAATGGGGCATGGG
AGTTCTTGTGGACGGGTGGCATATCACCCGGTGTTCTGGGTTTGCAACTT
GCATCGAGATTGTCTAGCTACGCTAGCGGTGCAGTCGAGGTAGGGGAAAC
CACGCTCACGATCAGCCGGGCCCAACCAAGAGTAGAGGTGAAGACGTCGA
TCAAAGTGTTTGGAAGGGAGAACGCAATTACGATTCGCACGAACCTGGAA
CCGGCAACAGAATTGCGCCTGGATGAGACGTACACGGAGGCCAGCATGGG
CAGTCTCCGGGTACCCTTTCCTGACCAAAAGCAACTCTTTCGACGCCCTC
TTTTTATTTCGTACTTGGATAATGACCTGCTTGTGGTACGTGATAGTTTT
GGTGCGCCCGACGTGTTAGTAAGGAAGGACAAGGCCTTCGTGAGCAACAC
GGGCGTGCCGTCTGCGACTGACGACGATACGTCTCCTGGTGCAGGGTGAA
GGAGCGAGGGATTGCAAATTCAAACGAAAGAGAGGGAGAGCCATACCATG
AGACGGCGAGATTTTTTTCACAAGGATAACAGAAATCGAGGCTGATGCCA
CATGCATTTTTATTTCTCACTTGGAGGGAAATAAGCGAGAAGGACACAGT
TTATCGTTTATGAGGCAGAGCAGGCCATGGCAATGCGGTCCGGAACTGGA
AAGAAGGTCTACAAGTTAGAAAACAGGCATCAGAGGTTCATTTCCAAACC
AAAAAAAACACTCGAAAGAATAATGCGCCCGTGCTCGATCCGA
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Coding sequence (CDS) from alignment at scaffold_11:388461..389653-

>mRNA_5713 ID=mRNA_5713|Name=jgi.p|Nanoce1779_2|590081|organism=Nannochloropsis oceanica|type=CDS|length=546bp|location=Sequence derived from alignment at scaffold_11:388461..389653- (Nannochloropsis oceanica)
ATGAAGCGCGCGTCAGTCAACGAATTGTTGCTGCGCCTAGAAGCTCTAAA
TCCGACGCCGATACCCGCATACTCGCCTTTGCTTAATGGGGCATGGGAGT
TCTTGTGGACGGGTGGCATATCACCCGGTGTTCTGGGTTTGCAACTTGCA
TCGAGATTGTCTAGCTACGCTAGCGGTGCAGTCGAGGTAGGGGAAACCAC
GCTCACGATCAGCCGGGCCCAACCAAGAGTAGAGGTGAAGACGTCGATCA
AAGTGTTTGGAAGGGAGAACGCAATTACGATTCGCACGAACCTGGAACCG
GCAACAGAATTGCGCCTGGATGAGACGTACACGGAGGCCAGCATGGGCAG
TCTCCGGGTACCCTTTCCTGACCAAAAGCAACTCTTTCGACGCCCTCTTT
TTATTTCGTACTTGGATAATGACCTGCTTGTGGTACGTGATAGTTTTGGT
GCGCCCGACGTGTTAGTAAGGAAGGACAAGGCCTTCGTGAGCAACACGGG
CGTGCCGTCTGCGACTGACGACGATACGTCTCCTGGTGCAGGGTGA
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Synonyms
Publications