jgi.p|Nanoce1779_2|590079, mRNA_5712 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|590079
Unique NamemRNA_5712
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length470
Alignment locationscaffold_11:387151..387620 +

Link to JBrowse

Properties
Property NameValue
TranscriptId590165
TrackFilteredModels2
ProteinId590079
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:387151..387620 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590079gene_5712Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590079mRNA_5712-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5712CDS_5712Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5712 ID=mRNA_5712|Name=jgi.p|Nanoce1779_2|590079|organism=Nannochloropsis oceanica|type=mRNA|length=470bp
ACTCCATCACCAACCCTCTCACCCTCCCCGCCCCCATTACTTGCGCCTCC
CAAGGGGTCCATGTGCGCCATGTCGTTGATAGAGTTGTCGCCAAAGTCCA
TGCCAGACTCCTGTGAAGATGAGAGGGCCGGCGCTTCCTGCTCCAGCTGT
CCTGCCAGCTGCTGCTGGTCCTGTTGCATCTGGTTGTTGTCCATGGTATG
TGCTGCTGGTTGGTGTGTTACTGCTCAGAGCATACCGGCCCGGGGCACAC
CCAACACCACCCCGTCGCTCAGACGGTGATCTCGTGCCGAGGGATTTCCC
AGTACCCTCACACGTCACTCCACAACAATCTGCCCCCTTGTTCAGGGAAT
GGCGTGCAGTTTCTTTACAAGAGGGGTGTGACGCAGCAGGTGTTGCCGCT
ACGTGTCAAGGGAAAGCCGCTCACACGCCACCAGGCTGTCTTGCGCGAGG
AAGCCGCCGGGAGTTGCTGT
back to top

protein sequence of jgi.p|Nanoce1779_2|590079

>mRNA_5712-protein ID=mRNA_5712-protein|Name=jgi.p|Nanoce1779_2|590079|organism=Nannochloropsis oceanica|type=polypeptide|length=117bp
MRGPALPAPAVLPAAAGPVASGCCPWYVLLVGVLLLRAYRPGAHPTPPRR
SDGDLVPRDFPVPSHVTPQQSAPLFREWRAVSLQEGCDAAGVAATCQGKA
AHTPPGCLARGSRRELL
back to top

mRNA from alignment at scaffold_11:387151..387620+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5712 ID=mRNA_5712|Name=jgi.p|Nanoce1779_2|590079|organism=Nannochloropsis oceanica|type=mRNA|length=470bp|location=Sequence derived from alignment at scaffold_11:387151..387620+ (Nannochloropsis oceanica)
ACTCCATCACCAACCCTCTCACCCTCCCCGCCCCCATTACTTGCGCCTCC
CAAGGGGTCCATGTGCGCCATGTCGTTGATAGAGTTGTCGCCAAAGTCCA
TGCCAGACTCCTGTGAAGATGAGAGGGCCGGCGCTTCCTGCTCCAGCTGT
CCTGCCAGCTGCTGCTGGTCCTGTTGCATCTGGTTGTTGTCCATGGTATG
TGCTGCTGGTTGGTGTGTTACTGCTCAGAGCATACCGGCCCGGGGCACAC
CCAACACCACCCCGTCGCTCAGACGGTGATCTCGTGCCGAGGGATTTCCC
AGTACCCTCACACGTCACTCCACAACAATCTGCCCCCTTGTTCAGGGAAT
GGCGTGCAGTTTCTTTACAAGAGGGGTGTGACGCAGCAGGTGTTGCCGCT
ACGTGTCAAGGGAAAGCCGCTCACACGCCACCAGGCTGTCTTGCGCGAGG
AAGCCGCCGGGAGTTGCTGT
back to top

Coding sequence (CDS) from alignment at scaffold_11:387151..387620+

>mRNA_5712 ID=mRNA_5712|Name=jgi.p|Nanoce1779_2|590079|organism=Nannochloropsis oceanica|type=CDS|length=352bp|location=Sequence derived from alignment at scaffold_11:387151..387620+ (Nannochloropsis oceanica)
ATGAGAGGGCCGGCGCTTCCTGCTCCAGCTGTCCTGCCAGCTGCTGCTGG
TCCTGTTGCATCTGGTTGTTGTCCATGGTATGTGCTGCTGGTTGGTGTGT
TACTGCTCAGAGCATACCGGCCCGGGGCACACCCAACACCACCCCGTCGC
TCAGACGGTGATCTCGTGCCGAGGGATTTCCCAGTACCCTCACACGTCAC
TCCACAACAATCTGCCCCCTTGTTCAGGGAATGGCGTGCAGTTTCTTTAC
AAGAGGGGTGTGACGCAGCAGGTGTTGCCGCTACGTGTCAAGGGAAAGCC
GCTCACACGCCACCAGGCTGTCTTGCGCGAGGAAGCCGCCGGGAGTTGCT
GT
back to top
Synonyms
Publications