jgi.p|Nanoce1779_2|590074, mRNA_5711 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|590074
Unique NamemRNA_5711
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1250
Alignment locationscaffold_11:384560..385809 +

Link to JBrowse

Properties
Property NameValue
TranscriptId590160
TrackFilteredModels2
ProteinId590074
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:384560..385809 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590074gene_5711Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590074mRNA_5711-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5711CDS_5711Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5711 ID=mRNA_5711|Name=jgi.p|Nanoce1779_2|590074|organism=Nannochloropsis oceanica|type=mRNA|length=1250bp
GGTCCTCGCCCTCGCACTCGCCACTCGTTCCGCCACCGTCAACGCCTCCC
CTCCCTCCCTCCCTCCTTCTTTCCGGGCATCAAACGTCACGTGACAGATA
GCCAGGGTGTGGTCCGGCAAGTCCACTACTGGCGAAACCAACAAGGGCAC
CTCGAAAGGCACGACCCCTCTCGGCGCGCTCATAAATAATATTGGCCGCA
CAGATGCACATCCCTCCCCCCGTCGCTTGGCCCGGAGGCCGCTCCCTCCT
CCCCCACCAAAGCCCGCACTACTACTCCCGCCTGCACTGAAAGGATGAGC
ATCCATCTCCTCAGGCTCCACATTTCCTGCCCCTCTGTGCAAGTGTTGCT
CCAACCCCGATTCCTGGTACAGAATTTCGAGCTTATCTCGCATCCCTCTC
TCCGCGTCTTTCTCCACCTTCACCATCCGTTCCTCCAACGCTTCCCACGA
GTCCAACAAGTCCTTATTCACAATCGCTGCGGCCCCTCCCTCCCCCCTTC
CCCTTCCCCCGGCCCTCGTCTTTGGCACAGGTTTCACGTATCCGGGTGGG
GCGATATGCTTTCGTTTCACCTCCTCCAATTTGAAAGTCTCCAGGCCCGC
ATCTGTTTTGACCACTACGTTTCCTCGTCTGATGCCTTCTATCACCCCTT
CTGCTCCTTCTGGTGTCAGCACCACTTCATTAGCTTCCAACGGTTCATCT
TCAAACTTCAAGACCAGCTCTTCCTCCTCCTCTTCCGAGTCCTCCTCCTC
CTCCTCCTCCTCGCTCTCTTCCATCTCCTTCTCGGACTCCGCTTCTCCTT
CTCCTCCGGCTGCTTTTAATGTCCCTTTTTTCTTCTGAATTTTTTCCTTC
ATCCACACAGCCATCTCCTGCATGGTGTGCACCAGCGCATGCCGCTTCCG
GAACGCCAAAACAATATCATGCAAGACCCTGATCTTCCGCCTCCTTGCTC
CCAACACCCACGCCTCCTTCTCACACAGGCTCTGCACCGCCCTGACTGCA
TGCGTCTTGACCTTTCTCTCTTTCTCTCTCTCCTGCAATACCTTGACCAT
CGTCCCCCTCAACGATCGGTACAGCGCATCCAAATTCTGCCTCTCCGCCT
CCGCCACGACGAACTCCACCGGTAGCGGCTGAATCACACTGTCCTTGTCC
TCTCCCTGCTCCTCCCCCCCTCCCACATGCAGAGAATCTATCATTTCCTC
CTCCTCCCCACTCTCTCCGCTGTCATCCTCATACCCCCCACCCCTCCCCC
back to top

protein sequence of jgi.p|Nanoce1779_2|590074

>mRNA_5711-protein ID=mRNA_5711-protein|Name=jgi.p|Nanoce1779_2|590074|organism=Nannochloropsis oceanica|type=polypeptide|length=175bp
MSIHLLRLHISCPSVQVLLQPRFLVQNFELISHPSLRVFLHLHHPFLQRF
PRVQQVLIHNRCGPSLPPSPSPGPRLWHRFHVSGWGDMLSFHLLQFESLQ
ARICFDHYVSSSDAFYHPFCSFWCQHHFISFQRFIFKLQDQLFLLLFRVL
LLLLLLALFHLLLGLRFSFSSGCF*
back to top

mRNA from alignment at scaffold_11:384560..385809+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5711 ID=mRNA_5711|Name=jgi.p|Nanoce1779_2|590074|organism=Nannochloropsis oceanica|type=mRNA|length=1250bp|location=Sequence derived from alignment at scaffold_11:384560..385809+ (Nannochloropsis oceanica)
GGTCCTCGCCCTCGCACTCGCCACTCGTTCCGCCACCGTCAACGCCTCCC
CTCCCTCCCTCCCTCCTTCTTTCCGGGCATCAAACGTCACGTGACAGATA
GCCAGGGTGTGGTCCGGCAAGTCCACTACTGGCGAAACCAACAAGGGCAC
CTCGAAAGGCACGACCCCTCTCGGCGCGCTCATAAATAATATTGGCCGCA
CAGATGCACATCCCTCCCCCCGTCGCTTGGCCCGGAGGCCGCTCCCTCCT
CCCCCACCAAAGCCCGCACTACTACTCCCGCCTGCACTGAAAGGATGAGC
ATCCATCTCCTCAGGCTCCACATTTCCTGCCCCTCTGTGCAAGTGTTGCT
CCAACCCCGATTCCTGGTACAGAATTTCGAGCTTATCTCGCATCCCTCTC
TCCGCGTCTTTCTCCACCTTCACCATCCGTTCCTCCAACGCTTCCCACGA
GTCCAACAAGTCCTTATTCACAATCGCTGCGGCCCCTCCCTCCCCCCTTC
CCCTTCCCCCGGCCCTCGTCTTTGGCACAGGTTTCACGTATCCGGGTGGG
GCGATATGCTTTCGTTTCACCTCCTCCAATTTGAAAGTCTCCAGGCCCGC
ATCTGTTTTGACCACTACGTTTCCTCGTCTGATGCCTTCTATCACCCCTT
CTGCTCCTTCTGGTGTCAGCACCACTTCATTAGCTTCCAACGGTTCATCT
TCAAACTTCAAGACCAGCTCTTCCTCCTCCTCTTCCGAGTCCTCCTCCTC
CTCCTCCTCCTCGCTCTCTTCCATCTCCTTCTCGGACTCCGCTTCTCCTT
CTCCTCCGGCTGCTTTTAATGTCCCTTTTTTCTTCTGAATTTTTTCCTTC
ATCCACACAGCCATCTCCTGCATGGTGTGCACCAGCGCATGCCGCTTCCG
GAACGCCAAAACAATATCATGCAAGACCCTGATCTTCCGCCTCCTTGCTC
CCAACACCCACGCCTCCTTCTCACACAGGCTCTGCACCGCCCTGACTGCA
TGCGTCTTGACCTTTCTCTCTTTCTCTCTCTCCTGCAATACCTTGACCAT
CGTCCCCCTCAACGATCGGTACAGCGCATCCAAATTCTGCCTCTCCGCCT
CCGCCACGACGAACTCCACCGGTAGCGGCTGAATCACACTGTCCTTGTCC
TCTCCCTGCTCCTCCCCCCCTCCCACATGCAGAGAATCTATCATTTCCTC
CTCCTCCCCACTCTCTCCGCTGTCATCCTCATACCCCCCACCCCTCCCCC
back to top

Coding sequence (CDS) from alignment at scaffold_11:384560..385809+

>mRNA_5711 ID=mRNA_5711|Name=jgi.p|Nanoce1779_2|590074|organism=Nannochloropsis oceanica|type=CDS|length=525bp|location=Sequence derived from alignment at scaffold_11:384560..385809+ (Nannochloropsis oceanica)
ATGAGCATCCATCTCCTCAGGCTCCACATTTCCTGCCCCTCTGTGCAAGT
GTTGCTCCAACCCCGATTCCTGGTACAGAATTTCGAGCTTATCTCGCATC
CCTCTCTCCGCGTCTTTCTCCACCTTCACCATCCGTTCCTCCAACGCTTC
CCACGAGTCCAACAAGTCCTTATTCACAATCGCTGCGGCCCCTCCCTCCC
CCCTTCCCCTTCCCCCGGCCCTCGTCTTTGGCACAGGTTTCACGTATCCG
GGTGGGGCGATATGCTTTCGTTTCACCTCCTCCAATTTGAAAGTCTCCAG
GCCCGCATCTGTTTTGACCACTACGTTTCCTCGTCTGATGCCTTCTATCA
CCCCTTCTGCTCCTTCTGGTGTCAGCACCACTTCATTAGCTTCCAACGGT
TCATCTTCAAACTTCAAGACCAGCTCTTCCTCCTCCTCTTCCGAGTCCTC
CTCCTCCTCCTCCTCCTCGCTCTCTTCCATCTCCTTCTCGGACTCCGCTT
CTCCTTCTCCTCCGGCTGCTTTTAA
back to top
Synonyms
Publications