jgi.p|Nanoce1779_2|590064, mRNA_5708 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|590064
Unique NamemRNA_5708
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length940
Alignment locationscaffold_11:377360..378299 +

Link to JBrowse

Properties
Property NameValue
TranscriptId590150
TrackFilteredModels2
ProteinId590064
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:377360..378299 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590064gene_5708Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590064mRNA_5708-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5708CDS_5708Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5708 ID=mRNA_5708|Name=jgi.p|Nanoce1779_2|590064|organism=Nannochloropsis oceanica|type=mRNA|length=940bp
ACACCAGCACAGTACACACCACACACTAGCATAAGACGCAATGGACGACC
CAGAGGCGCTGGTACCCTTTTTGCCCTCCTCCTTCTCGCTGCCCACCGCT
CCCTCCTCCATATCATCCTCCTCATCCTCCCCCTCTTACTCCTCCTCCTC
GTCGCTTTCCCCTCATATCTCCCCCTCCAATGTTTCTGTGTCGTCGCTAC
CATGTCGCAACCACTACTATCGTCAGTCTCCACTATCATCGTACGTCCAG
GTGGAGGAAGGCACGCTCCGCCGACATAACGCTCCTCCACCTTTCTCTTC
TTCGGCTGCCTCGCCATACTCCCTCTCCCACCTCCTCTCCGACGCATTCG
AATGGTTTAAAGAGGTAGTCATCTTCGCTCAGAAGGTATGGATGCCTCTT
ATCTTCTTTGGTGTAATAGGCTGCTGTCATTTGCTAGGGTGGGCAATGCT
TGTCTACAGCGCTTTGGCCATCTGGGGACCCACGACACCTACAGCTGCTG
CCGCTGCCGCTTCATCGCCATCAGTGTTAGCAGCAACATCATCGGAGGAT
GAAGCCATGCTACAAATGAGACCGCCGCAATTCATTTCGGGCCCCGCATC
CTTGGCTGATTGGCAGAGCTTAGGTTTTATCATATATATGACCTCTGTGT
TTGCCTCCTTTTTGTGGTTGCAACACTTTGTGAGGACACCCCAGGAGCAG
CCAGTGGTGAGTGAGGAGCGACGGTCCAGCGCCAGGAGCTTGGAAATATT
GGCTGTTTGAGCAGTTCGGGGAGAGCTGAAGAAAAAGATGATGATGATGA
TGAACAAGAATTACAAGAGCAAAAACCAGGAGACGAAGGAGGAGCAGCAG
CAGCATCAGCAGTAGCAGAAGCGGCAGCGGCAGCAGCAGCAGCAGCAGGG
ACAATAGAAGCAGTAGGAAGAGGAAATGGAGGAGGAGGAG
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protein sequence of jgi.p|Nanoce1779_2|590064

>mRNA_5708-protein ID=mRNA_5708-protein|Name=jgi.p|Nanoce1779_2|590064|organism=Nannochloropsis oceanica|type=polypeptide|length=240bp
MDDPEALVPFLPSSFSLPTAPSSISSSSSSPSYSSSSSLSPHISPSNVSV
SSLPCRNHYYRQSPLSSYVQVEEGTLRRHNAPPPFSSSAASPYSLSHLLS
DAFEWFKEVVIFAQKVWMPLIFFGVIGCCHLLGWAMLVYSALAIWGPTTP
TAAAAAASSPSVLAATSSEDEAMLQMRPPQFISGPASLADWQSLGFIIYM
TSVFASFLWLQHFVRTPQEQPVVSEERRSSARSLEILAV*
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mRNA from alignment at scaffold_11:377360..378299+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5708 ID=mRNA_5708|Name=jgi.p|Nanoce1779_2|590064|organism=Nannochloropsis oceanica|type=mRNA|length=940bp|location=Sequence derived from alignment at scaffold_11:377360..378299+ (Nannochloropsis oceanica)
ACACCAGCACAGTACACACCACACACTAGCATAAGACGCAATGGACGACC
CAGAGGCGCTGGTACCCTTTTTGCCCTCCTCCTTCTCGCTGCCCACCGCT
CCCTCCTCCATATCATCCTCCTCATCCTCCCCCTCTTACTCCTCCTCCTC
GTCGCTTTCCCCTCATATCTCCCCCTCCAATGTTTCTGTGTCGTCGCTAC
CATGTCGCAACCACTACTATCGTCAGTCTCCACTATCATCGTACGTCCAG
GTGGAGGAAGGCACGCTCCGCCGACATAACGCTCCTCCACCTTTCTCTTC
TTCGGCTGCCTCGCCATACTCCCTCTCCCACCTCCTCTCCGACGCATTCG
AATGGTTTAAAGAGGTAGTCATCTTCGCTCAGAAGGTATGGATGCCTCTT
ATCTTCTTTGGTGTAATAGGCTGCTGTCATTTGCTAGGGTGGGCAATGCT
TGTCTACAGCGCTTTGGCCATCTGGGGACCCACGACACCTACAGCTGCTG
CCGCTGCCGCTTCATCGCCATCAGTGTTAGCAGCAACATCATCGGAGGAT
GAAGCCATGCTACAAATGAGACCGCCGCAATTCATTTCGGGCCCCGCATC
CTTGGCTGATTGGCAGAGCTTAGGTTTTATCATATATATGACCTCTGTGT
TTGCCTCCTTTTTGTGGTTGCAACACTTTGTGAGGACACCCCAGGAGCAG
CCAGTGGTGAGTGAGGAGCGACGGTCCAGCGCCAGGAGCTTGGAAATATT
GGCTGTTTGAGCAGTTCGGGGAGAGCTGAAGAAAAAGATGATGATGATGA
TGAACAAGAATTACAAGAGCAAAAACCAGGAGACGAAGGAGGAGCAGCAG
CAGCATCAGCAGTAGCAGAAGCGGCAGCGGCAGCAGCAGCAGCAGCAGGG
ACAATAGAAGCAGTAGGAAGAGGAAATGGAGGAGGAGGAG
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Coding sequence (CDS) from alignment at scaffold_11:377360..378299+

>mRNA_5708 ID=mRNA_5708|Name=jgi.p|Nanoce1779_2|590064|organism=Nannochloropsis oceanica|type=CDS|length=720bp|location=Sequence derived from alignment at scaffold_11:377360..378299+ (Nannochloropsis oceanica)
ATGGACGACCCAGAGGCGCTGGTACCCTTTTTGCCCTCCTCCTTCTCGCT
GCCCACCGCTCCCTCCTCCATATCATCCTCCTCATCCTCCCCCTCTTACT
CCTCCTCCTCGTCGCTTTCCCCTCATATCTCCCCCTCCAATGTTTCTGTG
TCGTCGCTACCATGTCGCAACCACTACTATCGTCAGTCTCCACTATCATC
GTACGTCCAGGTGGAGGAAGGCACGCTCCGCCGACATAACGCTCCTCCAC
CTTTCTCTTCTTCGGCTGCCTCGCCATACTCCCTCTCCCACCTCCTCTCC
GACGCATTCGAATGGTTTAAAGAGGTAGTCATCTTCGCTCAGAAGGTATG
GATGCCTCTTATCTTCTTTGGTGTAATAGGCTGCTGTCATTTGCTAGGGT
GGGCAATGCTTGTCTACAGCGCTTTGGCCATCTGGGGACCCACGACACCT
ACAGCTGCTGCCGCTGCCGCTTCATCGCCATCAGTGTTAGCAGCAACATC
ATCGGAGGATGAAGCCATGCTACAAATGAGACCGCCGCAATTCATTTCGG
GCCCCGCATCCTTGGCTGATTGGCAGAGCTTAGGTTTTATCATATATATG
ACCTCTGTGTTTGCCTCCTTTTTGTGGTTGCAACACTTTGTGAGGACACC
CCAGGAGCAGCCAGTGGTGAGTGAGGAGCGACGGTCCAGCGCCAGGAGCT
TGGAAATATTGGCTGTTTGA
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Synonyms
Publications