jgi.p|Nanoce1779_2|590054, mRNA_5705 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|590054
Unique NamemRNA_5705
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length527
Alignment locationscaffold_11:371504..372536 +

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Properties
Property NameValue
TranscriptId590140
TrackFilteredModels2
ProteinId590054
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:371504..372536 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590054gene_5705Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590054mRNA_5705-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5705CDS_5705Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5705 ID=mRNA_5705|Name=jgi.p|Nanoce1779_2|590054|organism=Nannochloropsis oceanica|type=mRNA|length=527bp
ACAGGCCGCAGCCATGGCTTTCAAGGCAGTGGCAAGCTACATGGGCAAGG
ATAAGACGCCCAAAAATCCGGTGGTACAGCTGTACCGCACCATCTCTAAG
GAGTTGCCCCGTGTGCTCACCATCTACGATGCGGACCTGGCCCCTGCTGA
GGCGCGCGCCAAAGTCCAAAATCTCTTCCGCAAGAACTCCCACGTGGGCG
ACCCGGTGATTGTGGACATGCTGGTCAAAAAGGGTTATATGGAATTAGAA
GAAACGTTAATGCAATGGAAACAGAAAACGCATTTGCTTCGGTTGCTGGC
CGCAGACACAGAGACCCCGCGTAAGTACAAGAACAAGAAGACCGTGGCCG
AGAAGTTTTTTAGCAACACGTTGAATCCCGACGATTGAGTGCAATGCTAT
GGGGTAGGAGGTTGGATGGGATGAACAAGAGTTGAAATCCGTGTACGAAG
AGAATTTACAAGATTACGATGACAGAGGAAGAAAAGACAACGATATTTAC
ATATACAATATAATACATGTTTTTCCA
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protein sequence of jgi.p|Nanoce1779_2|590054

>mRNA_5705-protein ID=mRNA_5705-protein|Name=jgi.p|Nanoce1779_2|590054|organism=Nannochloropsis oceanica|type=polypeptide|length=125bp
MAFKAVASYMGKDKTPKNPVVQLYRTISKELPRVLTIYDADLAPAEARAK
VQNLFRKNSHVGDPVIVDMLVKKGYMELEETLMQWKQKTHLLRLLAADTE
TPRKYKNKKTVAEKFFSNTLNPDD*
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mRNA from alignment at scaffold_11:371504..372536+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5705 ID=mRNA_5705|Name=jgi.p|Nanoce1779_2|590054|organism=Nannochloropsis oceanica|type=mRNA|length=1033bp|location=Sequence derived from alignment at scaffold_11:371504..372536+ (Nannochloropsis oceanica)
ACAGGCCGCAGCCATGGCTTTCAAGGCAGTGGCAAGCTACATGGGCAAGG
ATAAGACGCCCAAGTAGGTGGATATCGAGTGTGTGGGTGGGAGGAATCAT
CTATGGTGGGGTAGAGAGCTTGGAGCAACGGCATCATCATCGTTACGGCC
CTCCTTGGTCTGGTAAGCGTAGCCCCGACTCACATGCTTCTACGGACGTG
CATATTTATACAGAAATCCGGTGGTACAGCTGTACCGCACCATCTCTAAG
GAGTTGCCCCGTGTGCTCACCATCTACGATGCGGACCTGGCCCCTGCTGA
GGTACGTCTGAAGGCCTGCGTGAGGCGGGGCGGGATAGAATGAATAACGA
CGATGGTGTGTCGTGTGCATTGGGAGGGGAGATGTTTCTTATAGAGCTGT
GTATGTTTGAAGGTCGCTGTAGAGTCGAGAATACCTGCCCGCGGGCTTGG
CGTGGCCGCGCAGCGCTGTGCATTTCTTCCACTCGAGCAACACGACCGAC
AGGTGCACTTCCTATCGGAGGCGCACCACCAACCGCATTCTATCCTCTTT
CGCGCATCAAATACCTCTCATACGGCTTTCAATCGGTTGTTCAGATCGAT
TCTCTTATTAATCACTTTCTCTGCTACCCCATATCCAAATACTCACACCC
TTCGCAGGCGCGCGCCAAAGTCCAAAATCTCTTCCGCAAGAACTCCCACG
TGGGCGACCCGGTGATTGTGGACATGCTGGTCAAAAAGGGTTATATGGAA
TTAGAAGAAACGTTAATGCAATGGAAACAGAAAACGCATTTGCTTCGGTT
GCTGGCCGCAGACACAGAGACCCCGCGTAAGTACAAGAACAAGAAGACCG
TGGCCGAGAAGTTTTTTAGCAACACGTTGAATCCCGACGATTGAGTGCAA
TGCTATGGGGTAGGAGGTTGGATGGGATGAACAAGAGTTGAAATCCGTGT
ACGAAGAGAATTTACAAGATTACGATGACAGAGGAAGAAAAGACAACGAT
ATTTACATATACAATATAATACATGTTTTTCCA
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Coding sequence (CDS) from alignment at scaffold_11:371504..372536+

>mRNA_5705 ID=mRNA_5705|Name=jgi.p|Nanoce1779_2|590054|organism=Nannochloropsis oceanica|type=CDS|length=1125bp|location=Sequence derived from alignment at scaffold_11:371504..372536+ (Nannochloropsis oceanica)
ATGGCTTTCAAGGCAGTGGCAAGCTACATGGGCAAGGATAAGACGCCCAA
AAATCCGGTGGTACAGCTGTACCGCACCATCTCTAAGGAGTTGCCCCGTG
TGCTCACCATCTACGATGCGGACCTGGCCCCTGCTGAGGCGCGCGCCAAA
GTCCAAAATCTCTTCCGCAAGAACTCCCACGTGGGCGACCCGGTGATTGT
GGACATGCTGGTCAAAAAGGGTTATATGGAATTAGAAGAAACGTTAATGC
AATGGAAACAGAAAACGCATTTGCTTCGGTTGCTGGCCGCAGACACAGAG
ACCCCGCGTAAGTACAAGAACAAGAAGACCGTGGCCGAGAAGTTTTTTAG
CAACACGTTGAATCCCGACGATTGAATGGCTTTCAAGGCAGTGGCAAGCT
ACATGGGCAAGGATAAGACGCCCAAAAATCCGGTGGTACAGCTGTACCGC
ACCATCTCTAAGGAGTTGCCCCGTGTGCTCACCATCTACGATGCGGACCT
GGCCCCTGCTGAGGCGCGCGCCAAAGTCCAAAATCTCTTCCGCAAGAACT
CCCACGTGGGCGACCCGGTGATTGTGGACATGCTGGTCAAAAAGGGTTAT
ATGGAATTAGAAGAAACGTTAATGCAATGGAAACAGAAAACGCATTTGCT
TCGGTTGCTGGCCGCAGACACAGAGACCCCGCGTAAGTACAAGAACAAGA
AGACCGTGGCCGAGAAGTTTTTTAGCAACACGTTGAATCCCGACGATTGA
ATGGCTTTCAAGGCAGTGGCAAGCTACATGGGCAAGGATAAGACGCCCAA
AAATCCGGTGGTACAGCTGTACCGCACCATCTCTAAGGAGTTGCCCCGTG
TGCTCACCATCTACGATGCGGACCTGGCCCCTGCTGAGGCGCGCGCCAAA
GTCCAAAATCTCTTCCGCAAGAACTCCCACGTGGGCGACCCGGTGATTGT
GGACATGCTGGTCAAAAAGGGTTATATGGAATTAGAAGAAACGTTAATGC
AATGGAAACAGAAAACGCATTTGCTTCGGTTGCTGGCCGCAGACACAGAG
ACCCCGCGTAAGTACAAGAACAAGAAGACCGTGGCCGAGAAGTTTTTTAG
CAACACGTTGAATCCCGACGATTGA
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Synonyms
Publications