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Properties
| Property Name | Value |
|---|
| TranscriptId | 590134 |
| Track | FilteredModels2 |
| ProteinId | 590048 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_11 | supercontig | scaffold_11:368093..370856 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5704 ID=mRNA_5704|Name=jgi.p|Nanoce1779_2|590048|organism=Nannochloropsis oceanica|type=mRNA|length=2515bp
ACAGGCCATGACGACCGTGCACAGAAGAGCGGCGCTGCTGCTGGCCGTGT
TAGTCCTGCCTTCTCCGACAGCGTCTATCTTCTACCTGCCAGGTGTGGCG
CCCAACTCGTACGAAAAGGGCGAAAATGTGCTCCTCAAGGTTAACAAGTT
GACATCCACCAAAACCCAGATTCCCTACGACTACTACTCTTTGCCCTATT
GCCACCCCAACAAAATTCAGGGTGAGTCGGAGAATTTGGGTGAGGTGCTG
GCAGGAGACCGGATTGAGAAAAACACGGACGTGGAGTTGAATTTCAAAGT
GAACGCGTATTGTCAGACGTCGTGCCGGGTGCTGCTGGACGAGAAGAAGA
AGAAACAGTTTATCAAGGCGATTGATCAGGACTACCGCGTCCACTGGATC
GTCGACAATTTGCCCGTGGCGACCAAAGTCAGGAGTGATTTGCGGCCGGA
TGACGTGTACTACTCTCGTGGCTTCCCTGTAGGCGGGCTCTTGGATGACA
AGCACTTCCTATTCAACCACATGCGTTTAATTATACGTTATCACGAGGAA
AAGAATGACACCCCGACGGAGGGCGGGGGAGGTATTCGCCGCTCACATAG
CTCGCGGATTGTGGGTTTCTTGGTGGAACCATACAGCATTAAGCATGTCT
ACACGGGGACCTGGCCGACGACGGCGGCGGATGCGAAGAAGATGGAGTAC
AGCACGTGCTCGTTGGCATCGCCTGCGAGCTTTGGTCCGCGTGACTTCCT
GACGCTGGAGGATAATGACGAGATAATTTTTACGTACGATGTGGAATGGG
AGGAGGACCCGAAGACCCCTTGGGCGCACCGGTGGGATGTGTATTTGAAG
GGGAACCCGGACGATAAGATCCATTGGTTCTCCATCACTAATAGCACGAT
GATTGTCTTCTTTCTGGCCGGAATGGTGGCGATGATTCTGGTGCGGGCCT
TGCACAGGGACATTAGTCGCTATAACGACTCAGCGGCTGCCGAGGACGCG
AAGGAGGAGTACGGGTGGAAGTTGGTGCATGCGGATGTCTTCCGCCCTCC
TACCGTCATGCCTATGGTGTTTGCGGCGCTGGTAGGATCAGGAGTGCATT
TGTTGGTGATGACATTCACAACCTTGATATTTGCCTTGCTAGGGTTCTTG
TCCCCTGCGAATCGCGGGTCGCTTGTGACGGCGTTTGTGTTGTTGTTCGT
ATTTTTGAGTTCATTCGCCGGGTATACCTCATCAAGGATTTACAAGATGT
TCAGAGGCACGGACTTCAAGCGCAACACGCTGATGACGGCATTCCTGTTC
CCAGGTATTGTGTTCTCGATTTTCTTGGCCCTGAACGCCGCAGTGGCTGC
CCGAGGATCGACCTTGGCCTTGCCAGTCGGGTACTTCTTCCTGCTGGTCT
TCTTGTGGTTTGGGGTGTCGGTGCCGTTGGTGTTTGTGGGGTCTTATTTT
GGCTACAAGAAGCCGGCGATTGAGCATCCCGTTCGCACGAATATCATTGC
CCGAGGCGTGCCTCCTCAGCCTTGGTACATGCATCCGTTGCTGGTGATTG
TGTTGAGTGGTATCTTGCCCTTTGGCGCGGTGAGTGTGGAGTTGTTTTTT
ATCATGTCGGCCTTGTGGCTGCATCAGTTTTACTACATCTTTGGGTTCCT
GTTTTTGGCAGTGTTGATCCTGGTGGCCACGTGCGCGGAGATGACGATCG
TCATGACGTACTTCCAGCTGTGCAATGAGGATTATCGGTGGTGGTGGAGG
AGCTTCTTGTCGTCCGGGTCCTGTGCGCTGTATATCTTTTTGTACTCTGT
GTGGTACCTGAATAGGGAGTTGAATATCGACGGGGGGGTTGGGATGATGC
TTTACTTCGGGCATATGACCGTCTTTACGTTTACCTTTTTTTTGTTGACC
GGCGCGATCGGGTTCTATTCGGCGTTCTGGTTCAACCACCGGATTTATTC
GTCGATCAAGGTGGATTAGGGGGAAGGATGGAGGGAGGGTGAAGGTGTGT
TAACATTTCTCCCCATGTTCGCCGGTTGATGCCATTGACTTAAACTGCCG
CGGTTGGACCAGCCATTGGATGCTTTCGTCGATTCAGCTTATTCAGAGGG
AGGGAGCGACGGAAGGGGTATTGAAGAAGCAAAATTGAGAGGATTGAAGA
AAAATGCAGGGTGAATGGTGCATTCTTTGTTAGAGTAGTAGGAAGAAAGG
GCAGTGAAATGGCAATTACAAAGCAAGGTCAAGAGATAGAAAAGGAAAAA
GAGAAAAATACAAACGTAGACCATCGAGTCTTTGTATAGCAGAATAAAAC
GCAATTCGAGGGGCAATAGAGTTATGGGGCAAAAAATGAAAAAGAATGAA
AAACTATACACCCTTCTACATCAAAAAAGAATAAGGAAAACAACAGAAGC
AAGGAAGCTTTTGGACTTGGGACAGAAATCAGACACGAGGGCGTGTGAAT
TGGAGCAGCTTCAACTGTAGAACCAAAGACACTTCCGAATAATAAACACC
CCTTAAGCTCGATGA back to topprotein sequence of jgi.p|Nanoce1779_2|590048 >mRNA_5704-protein ID=mRNA_5704-protein|Name=jgi.p|Nanoce1779_2|590048|organism=Nannochloropsis oceanica|type=polypeptide|length=654bp
MTTVHRRAALLLAVLVLPSPTASIFYLPGVAPNSYEKGENVLLKVNKLTS
TKTQIPYDYYSLPYCHPNKIQGESENLGEVLAGDRIEKNTDVELNFKVNA
YCQTSCRVLLDEKKKKQFIKAIDQDYRVHWIVDNLPVATKVRSDLRPDDV
YYSRGFPVGGLLDDKHFLFNHMRLIIRYHEEKNDTPTEGGGGIRRSHSSR
IVGFLVEPYSIKHVYTGTWPTTAADAKKMEYSTCSLASPASFGPRDFLTL
EDNDEIIFTYDVEWEEDPKTPWAHRWDVYLKGNPDDKIHWFSITNSTMIV
FFLAGMVAMILVRALHRDISRYNDSAAAEDAKEEYGWKLVHADVFRPPTV
MPMVFAALVGSGVHLLVMTFTTLIFALLGFLSPANRGSLVTAFVLLFVFL
SSFAGYTSSRIYKMFRGTDFKRNTLMTAFLFPGIVFSIFLALNAAVAARG
STLALPVGYFFLLVFLWFGVSVPLVFVGSYFGYKKPAIEHPVRTNIIARG
VPPQPWYMHPLLVIVLSGILPFGAVSVELFFIMSALWLHQFYYIFGFLFL
AVLILVATCAEMTIVMTYFQLCNEDYRWWWRSFLSSGSCALYIFLYSVWY
LNRELNIDGGVGMMLYFGHMTVFTFTFFLLTGAIGFYSAFWFNHRIYSSI
KVD* back to topmRNA from alignment at scaffold_11:368093..370856- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5704 ID=mRNA_5704|Name=jgi.p|Nanoce1779_2|590048|organism=Nannochloropsis oceanica|type=mRNA|length=2764bp|location=Sequence derived from alignment at scaffold_11:368093..370856- (Nannochloropsis oceanica)
ACAGGCCATGACGACCGTGCACAGAAGAGCGGCGCTGCTGCTGGCCGTGT
TAGTCCTGCCTTCTCCGACAGCGTCTATCTTCTACCTGCCAGGTGTGGCG
CCCAACTCGTACGAAAAGGGCGAAAATGTACGTTGAAGGGTGTGGGGTTG
CCGAGCCCAGTGACTGTGACTTTGGCATGATTCTGTCTGTTGCGCTGGAG
GAAGAAATGAGGACGTCAGCTAGCTGCTCAAGAAGAGCTCATGATACCAA
GCCGTCGCGAAGGGGCATATACCTCTCAGAGAAGATAGTGCTCCTTTCCG
CAGCGAGGCCCCATTGCCAGACGAAGTCCAAACTCACTCCTCTCCCCTCC
TCCCCTCTGTACTCCCAACCCCCCAGGTGCTCCTCAAGGTTAACAAGTTG
ACATCCACCAAAACCCAGATTCCCTACGACTACTACTCTTTGCCCTATTG
CCACCCCAACAAAATTCAGGGTGAGTCGGAGAATTTGGGTGAGGTGCTGG
CAGGAGACCGGATTGAGAAAAACACGGACGTGGAGTTGAATTTCAAAGTG
AACGCGTATTGTCAGACGTCGTGCCGGGTGCTGCTGGACGAGAAGAAGAA
GAAACAGTTTATCAAGGCGATTGATCAGGACTACCGCGTCCACTGGATCG
TCGACAATTTGCCCGTGGCGACCAAAGTCAGGAGTGATTTGCGGCCGGAT
GACGTGTACTACTCTCGTGGCTTCCCTGTAGGCGGGCTCTTGGATGACAA
GCACTTCCTATTCAACCACATGCGTTTAATTATACGTTATCACGAGGAAA
AGAATGACACCCCGACGGAGGGCGGGGGAGGTATTCGCCGCTCACATAGC
TCGCGGATTGTGGGTTTCTTGGTGGAACCATACAGCATTAAGCATGTCTA
CACGGGGACCTGGCCGACGACGGCGGCGGATGCGAAGAAGATGGAGTACA
GCACGTGCTCGTTGGCATCGCCTGCGAGCTTTGGTCCGCGTGACTTCCTG
ACGCTGGAGGATAATGACGAGATAATTTTTACGTACGATGTGGAATGGGA
GGAGGACCCGAAGACCCCTTGGGCGCACCGGTGGGATGTGTATTTGAAGG
GGAACCCGGACGATAAGATCCATTGGTTCTCCATCACTAATAGCACGATG
ATTGTCTTCTTTCTGGCCGGAATGGTGGCGATGATTCTGGTGCGGGCCTT
GCACAGGGACATTAGTCGCTATAACGACTCAGCGGCTGCCGAGGACGCGA
AGGAGGAGTACGGGTGGAAGTTGGTGCATGCGGATGTCTTCCGCCCTCCT
ACCGTCATGCCTATGGTGTTTGCGGCGCTGGTAGGATCAGGAGTGCATTT
GTTGGTGATGACATTCACAACCTTGATATTTGCCTTGCTAGGGTTCTTGT
CCCCTGCGAATCGCGGGTCGCTTGTGACGGCGTTTGTGTTGTTGTTCGTA
TTTTTGAGTTCATTCGCCGGGTATACCTCATCAAGGATTTACAAGATGTT
CAGAGGCACGGACTTCAAGCGCAACACGCTGATGACGGCATTCCTGTTCC
CAGGTATTGTGTTCTCGATTTTCTTGGCCCTGAACGCCGCAGTGGCTGCC
CGAGGATCGACCTTGGCCTTGCCAGTCGGGTACTTCTTCCTGCTGGTCTT
CTTGTGGTTTGGGGTGTCGGTGCCGTTGGTGTTTGTGGGGTCTTATTTTG
GCTACAAGAAGCCGGCGATTGAGCATCCCGTTCGCACGAATATCATTGCC
CGAGGCGTGCCTCCTCAGCCTTGGTACATGCATCCGTTGCTGGTGATTGT
GTTGAGTGGTATCTTGCCCTTTGGCGCGGTGAGTGTGGAGTTGTTTTTTA
TCATGTCGGCCTTGTGGCTGCATCAGTTTTACTACATCTTTGGGTTCCTG
TTTTTGGCAGTGTTGATCCTGGTGGCCACGTGCGCGGAGATGACGATCGT
CATGACGTACTTCCAGCTGTGCAATGAGGATTATCGGTGGTGGTGGAGGA
GCTTCTTGTCGTCCGGGTCCTGTGCGCTGTATATCTTTTTGTACTCTGTG
TGGTACCTGAATAGGGAGTTGAATATCGACGGGGGGGTTGGGATGATGCT
TTACTTCGGGCATATGACCGTCTTTACGTTTACCTTTTTTTTGTTGACCG
GCGCGATCGGGTTCTATTCGGCGTTCTGGTTCAACCACCGGATTTATTCG
TCGATCAAGGTGGATTAGGGGGAAGGATGGAGGGAGGGTGAAGGTGTGTT
AACATTTCTCCCCATGTTCGCCGGTTGATGCCATTGACTTAAACTGCCGC
GGTTGGACCAGCCATTGGATGCTTTCGTCGATTCAGCTTATTCAGAGGGA
GGGAGCGACGGAAGGGGTATTGAAGAAGCAAAATTGAGAGGATTGAAGAA
AAATGCAGGGTGAATGGTGCATTCTTTGTTAGAGTAGTAGGAAGAAAGGG
CAGTGAAATGGCAATTACAAAGCAAGGTCAAGAGATAGAAAAGGAAAAAG
AGAAAAATACAAACGTAGACCATCGAGTCTTTGTATAGCAGAATAAAACG
CAATTCGAGGGGCAATAGAGTTATGGGGCAAAAAATGAAAAAGAATGAAA
AACTATACACCCTTCTACATCAAAAAAGAATAAGGAAAACAACAGAAGCA
AGGAAGCTTTTGGACTTGGGACAGAAATCAGACACGAGGGCGTGTGAATT
GGAGCAGCTTCAACTGTAGAACCAAAGACACTTCCGAATAATAAACACCC
CTTAAGCTCGATGA back to topCoding sequence (CDS) from alignment at scaffold_11:368093..370856- >mRNA_5704 ID=mRNA_5704|Name=jgi.p|Nanoce1779_2|590048|organism=Nannochloropsis oceanica|type=CDS|length=3924bp|location=Sequence derived from alignment at scaffold_11:368093..370856- (Nannochloropsis oceanica)
GTGCTCCTCAAGGTTAACAAGTTGACATCCACCAAAACCCAGATTCCCTA
CGACTACTACTCTTTGCCCTATTGCCACCCCAACAAAATTCAGGGTGAGT
CGGAGAATTTGGGTGAGGTGCTGGCAGGAGACCGGATTGAGAAAAACACG
GACGTGGAGTTGAATTTCAAAGTGAACGCGTATTGTCAGACGTCGTGCCG
GGTGCTGCTGGACGAGAAGAAGAAGAAACAGTTTATCAAGGCGATTGATC
AGGACTACCGCGTCCACTGGATCGTCGACAATTTGCCCGTGGCGACCAAA
GTCAGGAGTGATTTGCGGCCGGATGACGTGTACTACTCTCGTGGCTTCCC
TGTAGGCGGGCTCTTGGATGACAAGCACTTCCTATTCAACCACATGCGTT
TAATTATACGTTATCACGAGGAAAAGAATGACACCCCGACGGAGGGCGGG
GGAGGTATTCGCCGCTCACATAGCTCGCGGATTGTGGGTTTCTTGGTGGA
ACCATACAGCATTAAGCATGTCTACACGGGGACCTGGCCGACGACGGCGG
CGGATGCGAAGAAGATGGAGTACAGCACGTGCTCGTTGGCATCGCCTGCG
AGCTTTGGTCCGCGTGACTTCCTGACGCTGGAGGATAATGACGAGATAAT
TTTTACGTACGATGTGGAATGGGAGGAGGACCCGAAGACCCCTTGGGCGC
ACCGGTGGGATGTGTATTTGAAGGGGAACCCGGACGATAAGATCCATTGG
TTCTCCATCACTAATAGCACGATGATTGTCTTCTTTCTGGCCGGAATGGT
GGCGATGATTCTGGTGCGGGCCTTGCACAGGGACATTAGTCGCTATAACG
ACTCAGCGGCTGCCGAGGACGCGAAGGAGGAGTACGGGTGGAAGTTGGTG
CATGCGGATGTCTTCCGCCCTCCTACCGTCATGCCTATGGTGTTTGCGGC
GCTGGTAGGATCAGGAGTGCATTTGTTGGTGATGACATTCACAACCTTGA
TATTTGCCTTGCTAGGGTTCTTGTCCCCTGCGAATCGCGGGTCGCTTGTG
ACGGCGTTTGTGTTGTTGTTCGTATTTTTGAGTTCATTCGCCGGGTATAC
CTCATCAAGGATTTACAAGATGTTCAGAGGCACGGACTTCAAGCGCAACA
CGCTGATGACGGCATTCCTGTTCCCAGGTATTGTGTTCTCGATTTTCTTG
GCCCTGAACGCCGCAGTGGCTGCCCGAGGATCGACCTTGGCCTTGCCAGT
CGGGTACTTCTTCCTGCTGGTCTTCTTGTGGTTTGGGGTGTCGGTGCCGT
TGGTGTTTGTGGGGTCTTATTTTGGCTACAAGAAGCCGGCGATTGAGCAT
CCCGTTCGCACGAATATCATTGCCCGAGGCGTGCCTCCTCAGCCTTGGTA
CATGCATCCGTTGCTGGTGATTGTGTTGAGTGGTATCTTGCCCTTTGGCG
CGGTGAGTGTGGAGTTGTTTTTTATCATGTCGGCCTTGTGGCTGCATCAG
TTTTACTACATCTTTGGGTTCCTGTTTTTGGCAGTGTTGATCCTGGTGGC
CACGTGCGCGGAGATGACGATCGTCATGACGTACTTCCAGCTGTGCAATG
AGGATTATCGGTGGTGGTGGAGGAGCTTCTTGTCGTCCGGGTCCTGTGCG
CTGTATATCTTTTTGTACTCTGTGTGGTACCTGAATAGGGAGTTGAATAT
CGACGGGGGGGTTGGGATGATGCTTTACTTCGGGCATATGACCGTCTTTA
CGTTTACCTTTTTTTTGTTGACCGGCGCGATCGGGTTCTATTCGGCGTTC
TGGTTCAACCACCGGATTTATTCGTCGATCAAGGTGGATTAGATGACGAC
CGTGCACAGAAGAGCGGCGCTGCTGCTGGCCGTGTTAGTCCTGCCTTCTC
CGACAGCGTCTATCTTCTACCTGCCAGGTGTGGCGCCCAACTCGTACGAA
AAGGGCGAAAATGTGCTCCTCAAGGTTAACAAGTTGACATCCACCAAAAC
CCAGATTCCCTACGACTACTACTCTTTGCCCTATTGCCACCCCAACAAAA
TTCAGGGTGAGTCGGAGAATTTGGGTGAGGTGCTGGCAGGAGACCGGATT
GAGAAAAACACGGACGTGGAGTTGAATTTCAAAGTGAACGCGTATTGTCA
GACGTCGTGCCGGGTGCTGCTGGACGAGAAGAAGAAGAAACAGTTTATCA
AGGCGATTGATCAGGACTACCGCGTCCACTGGATCGTCGACAATTTGCCC
GTGGCGACCAAAGTCAGGAGTGATTTGCGGCCGGATGACGTGTACTACTC
TCGTGGCTTCCCTGTAGGCGGGCTCTTGGATGACAAGCACTTCCTATTCA
ACCACATGCGTTTAATTATACGTTATCACGAGGAAAAGAATGACACCCCG
ACGGAGGGCGGGGGAGGTATTCGCCGCTCACATAGCTCGCGGATTGTGGG
TTTCTTGGTGGAACCATACAGCATTAAGCATGTCTACACGGGGACCTGGC
CGACGACGGCGGCGGATGCGAAGAAGATGGAGTACAGCACGTGCTCGTTG
GCATCGCCTGCGAGCTTTGGTCCGCGTGACTTCCTGACGCTGGAGGATAA
TGACGAGATAATTTTTACGTACGATGTGGAATGGGAGGAGGACCCGAAGA
CCCCTTGGGCGCACCGGTGGGATGTGTATTTGAAGGGGAACCCGGACGAT
AAGATCCATTGGTTCTCCATCACTAATAGCACGATGATTGTCTTCTTTCT
GGCCGGAATGGTGGCGATGATTCTGGTGCGGGCCTTGCACAGGGACATTA
GTCGCTATAACGACTCAGCGGCTGCCGAGGACGCGAAGGAGGAGTACGGG
TGGAAGTTGGTGCATGCGGATGTCTTCCGCCCTCCTACCGTCATGCCTAT
GGTGTTTGCGGCGCTGGTAGGATCAGGAGTGCATTTGTTGGTGATGACAT
TCACAACCTTGATATTTGCCTTGCTAGGGTTCTTGTCCCCTGCGAATCGC
GGGTCGCTTGTGACGGCGTTTGTGTTGTTGTTCGTATTTTTGAGTTCATT
CGCCGGGTATACCTCATCAAGGATTTACAAGATGTTCAGAGGCACGGACT
TCAAGCGCAACACGCTGATGACGGCATTCCTGTTCCCAGGTATTGTGTTC
TCGATTTTCTTGGCCCTGAACGCCGCAGTGGCTGCCCGAGGATCGACCTT
GGCCTTGCCAGTCGGGTACTTCTTCCTGCTGGTCTTCTTGTGGTTTGGGG
TGTCGGTGCCGTTGGTGTTTGTGGGGTCTTATTTTGGCTACAAGAAGCCG
GCGATTGAGCATCCCGTTCGCACGAATATCATTGCCCGAGGCGTGCCTCC
TCAGCCTTGGTACATGCATCCGTTGCTGGTGATTGTGTTGAGTGGTATCT
TGCCCTTTGGCGCGGTGAGTGTGGAGTTGTTTTTTATCATGTCGGCCTTG
TGGCTGCATCAGTTTTACTACATCTTTGGGTTCCTGTTTTTGGCAGTGTT
GATCCTGGTGGCCACGTGCGCGGAGATGACGATCGTCATGACGTACTTCC
AGCTGTGCAATGAGGATTATCGGTGGTGGTGGAGGAGCTTCTTGTCGTCC
GGGTCCTGTGCGCTGTATATCTTTTTGTACTCTGTGTGGTACCTGAATAG
GGAGTTGAATATCGACGGGGGGGTTGGGATGATGCTTTACTTCGGGCATA
TGACCGTCTTTACGTTTACCTTTTTTTTGTTGACCGGCGCGATCGGGTTC
TATTCGGCGTTCTGGTTCAACCACCGGATTTATTCGTCGATCAAGGTGGA
TTAGATGACGACCGTGCACAGAAGAGCGGCGCTGCTGCTGGCCGTGTTAG
TCCTGCCTTCTCCGACAGCGTCTATCTTCTACCTGCCAGGTGTGGCGCCC
AACTCGTACGAAAAGGGCGAAAAT back to top
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