jgi.p|Nanoce1779_2|630488, mRNA_5703 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|630488
Unique Name	mRNA_5703
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2687
Alignment location	scaffold_11:365406..368092 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	630574
Track	FilteredModels2
ProteinId	630488

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_11	supercontig	scaffold_11:365406..368092 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|630488	gene_5703	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|630488	mRNA_5703-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5703	CDS_5703	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_11:365406..368092+
coding sequence from alignment at scaffold_11:365406..368092+

mRNA sequence

>mRNA_5703 ID=mRNA_5703|Name=jgi.p|Nanoce1779_2|630488|organism=Nannochloropsis oceanica|type=mRNA|length=2687bp
ACAGCCCCACTCAGTGCCGTCGACTTGCGGCTACAGACATGGATCTCTCT
GTGGCCGCCCCGCTGCCCGATTCTGGAACTACCATTTCCTCCACCGTCGT
TAAACAAAGCAGCACGCGGCGCGCGGTTCTTGGGGACAAGGAGAACACAA
GCACCACGCATAAGCTGGAGACCTCTGCCACAAACACGCTCTTGAGCACC
AGTATCGCCGGAGGAACCGCACTGTCCTTGAAGCCAGGCTTTCTCTCCAA
GCGACGGGCCTTAGTGCGGTCGAGCAGCACGCCCCCTGCCTCATCATCTG
CCTCCCACAAGGGGTCCCTCGGCCACTCCTTCAAAGCAGCGGCTGCCACG
GCGGCTTTGTCCGTCGTGTCGTTCGGTGGCAAGCACAACACCAACAGGCA
GCGAGTCTGCCGGCCTATCCAAGACGGGAATGGCGAGTTTGATGTAGGGC
CGTCATCGCACGAAAACGAAGATGTCTCGCCAACAGCATCAGCAGCAGCA
ACCTTGCCCCGTCCAGCGTTTTACCCCGGGCTTAAGCCCACAAGGGAAGC
AAATTCTGCCGCAACGGCTTCATCCGTGAAAATGACGGGTGGTGGCAGTG
GTGGTGGTGGTATGGGGCTGGGCAGTGCCCTTTTTGGTGGGTTTGGACTG
TTGGGCAACTCTGCTCCTGCCGGGGGCCCGAGCATGGACGATAGCAACTT
CATAGCCCGCCTCGGCAGCCTGGCCGGCATGCGGTTGGAGCTTCAAGACT
CAAGCCCAGAGCGTCACACACATGGTGATGGGGTTAATGAGATGGTCCCT
GCTTCTCCTTTTAACGAAGGGTACGGCACCCGCCGTCGCCTTCCCCACGA
CTTTTCGCTCAAGTCCAGCCTATGCTTCGAATCCGCCCAGCCATTCAATT
GGTGTCGGCCCATTCCTGGTTCTGCGGAAGCCAAGGGCATGCTCCGCCAC
CTTCGAGAGAGCATTGATCCCCCCTCTCCCCCCTCTCCTCAGCCGCAAGA
AGACGATGGTTCAGCTGTTCCCTGTGCCAGGCCTCCTGCTTCTTTCGATG
AGGCGCTCGAGATATGGGTTGCTGCTTCTTTATCCTATGCCCATCCTGCC
GAACCTCTAGCGGCATCCATGCATTTGCCATTACAAATGGTGCGGAAAAC
GATGGAAAACGCTTTTGCTCGTGATCCTGCCCCGGTGGTAGGGGTGGATG
AGGGAGCGAATGGGGGAGGGGGGGGAGGGAACAACAAGCAGACGCGACAG
CCAGATCCGGCGTTGATGCTGTATAAGAGATTAAGGCAGTGGGAGGAGGC
CTTTAGACACTTGTACACTCTTTACAGGCATGATCCTTCGCTCACATTTT
ATTCGCAAGCCCCGGACTTCACGGTAGTTTGGACGAGGGAGGAGGATGGG
GGGGGCGGGAGGGACGAAGTTGGGGATGGCATGGAGTATGATGGTGTTAA
AGAGGAGAGGGGAAAAGGAGGGACGAAGGAAGTGTCGCAGCTGAAGGTGG
TTATTTCGCATTCCAGACGCTGGCTGCGGGCACGGCTTCGTGAGGCGGAT
ATCCCTTTTTCTGTCCCCCTAGCGCCGGACGCCGAGGCTCGTGACAACGA
AGAGGCAACCCTCCCACATATCACTGTTATGGCCGGTGGTGGTAATAGTG
ACAGGATACCGAGAGGCAAGGTAGGAGCGGAGGAAGAGTTGCAAGAACTG
TTGTCATCCGTGACGGGCCAGATGGCTGGAGGGATGGGGATGGTGGAGAT
GCAGAGCCGACGTCGACCCAAGCACCTGAATGACTTACCTCGGCAACGAT
CACAGTTGGTGCTCAAGGGGCATGAGGCTGTACATGGCTTGTTTAATTTC
TTGCTGAATTTGGAGAATGGCTTGGGTCCCAGTTCTGTTGCGGATGTCCC
TCGTTTGTTGGCAGATCGGCCTTTTATGCATGGGAGCATGCAAAGGCTAC
AGGTGGCGTTCAATGGACAGGTGCAACGGACGCTGCTCCAGGGAAGTGGT
GGCGATGCGAGGGGAAAGCGTGGGAGGTATTTTGCGGATGAGGGGGAGGA
GGATGAGGGGGAGGAGAAAGGGATGGGGGGGATGGAGACTGTGTATCAGC
TTAAGTTGTGTGGTCCGGTGTTGCCTGGGCAGCTTAGGCGGTTGGCGGGG
GTGGTGCATTTTTTGCAGCAGGATCGAAAAGGGAAGGAAGTAGGGGTGGG
GAAGAATAGGTGGAAGAAGCAGAAGACATCGGGGTCGGGAGGGGATTGGA
GCTTGGTAATGGAGCCGTTGAATGGAACCGAGGCGTTTAACTTGCAGGAG
GGAGGGAGGGAGGGAGAGGTAGGGGGAGGAGGAAGGGGAGGAGAATTGGG
TCGGACGCGAATGCGGAGTTTGAAGGAGGTGAGGTGGAGCGCGGAGAAGG
AAATGTTTGCTGTTATTACCACATGTTAGGATCGGAAGGGAAGTGAAATG
GGAAGCGAATAACATGAAAGGGAAGAGGGAGGCAAGAAAAACGAGAAATG
TAAGAAAGACGGTCATGGAGTACACAGGTAGAGTGAGGCGAAATGGTACA
CCCACGCAAAGTAAACCCTGTTCGAGACTATCCGTTCTGTATGTGAGTCT
TTGAATGCATGTGTGCGCGATCCACATGGCAAGAAGAATCTCACACAACT
GCAAAAAGGAGAGAAACCCTTAGAATTGCGTTCAAGA

protein sequence of jgi.p|Nanoce1779_2|630488

>mRNA_5703-protein ID=mRNA_5703-protein|Name=jgi.p|Nanoce1779_2|630488|organism=Nannochloropsis oceanica|type=polypeptide|length=797bp
MDLSVAAPLPDSGTTISSTVVKQSSTRRAVLGDKENTSTTHKLETSATNT
LLSTSIAGGTALSLKPGFLSKRRALVRSSSTPPASSSASHKGSLGHSFKA
AAATAALSVVSFGGKHNTNRQRVCRPIQDGNGEFDVGPSSHENEDVSPTA
SAAATLPRPAFYPGLKPTREANSAATASSVKMTGGGSGGGGMGLGSALFG
GFGLLGNSAPAGGPSMDDSNFIARLGSLAGMRLELQDSSPERHTHGDGVN
EMVPASPFNEGYGTRRRLPHDFSLKSSLCFESAQPFNWCRPIPGSAEAKG
MLRHLRESIDPPSPPSPQPQEDDGSAVPCARPPASFDEALEIWVAASLSY
AHPAEPLAASMHLPLQMVRKTMENAFARDPAPVVGVDEGANGGGGGGNNK
QTRQPDPALMLYKRLRQWEEAFRHLYTLYRHDPSLTFYSQAPDFTVVWTR
EEDGGGGRDEVGDGMEYDGVKEERGKGGTKEVSQLKVVISHSRRWLRARL
READIPFSVPLAPDAEARDNEEATLPHITVMAGGGNSDRIPRGKVGAEEE
LQELLSSVTGQMAGGMGMVEMQSRRRPKHLNDLPRQRSQLVLKGHEAVHG
LFNFLLNLENGLGPSSVADVPRLLADRPFMHGSMQRLQVAFNGQVQRTLL
QGSGGDARGKRGRYFADEGEEDEGEEKGMGGMETVYQLKLCGPVLPGQLR
RLAGVVHFLQQDRKGKEVGVGKNRWKKQKTSGSGGDWSLVMEPLNGTEAF
NLQEGGREGEVGGGGRGGELGRTRMRSLKEVRWSAEKEMFAVITTC*

mRNA from alignment at scaffold_11:365406..368092+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5703 ID=mRNA_5703|Name=jgi.p|Nanoce1779_2|630488|organism=Nannochloropsis oceanica|type=mRNA|length=2687bp|location=Sequence derived from alignment at scaffold_11:365406..368092+ (Nannochloropsis oceanica)
ACAGCCCCACTCAGTGCCGTCGACTTGCGGCTACAGACATGGATCTCTCT
GTGGCCGCCCCGCTGCCCGATTCTGGAACTACCATTTCCTCCACCGTCGT
TAAACAAAGCAGCACGCGGCGCGCGGTTCTTGGGGACAAGGAGAACACAA
GCACCACGCATAAGCTGGAGACCTCTGCCACAAACACGCTCTTGAGCACC
AGTATCGCCGGAGGAACCGCACTGTCCTTGAAGCCAGGCTTTCTCTCCAA
GCGACGGGCCTTAGTGCGGTCGAGCAGCACGCCCCCTGCCTCATCATCTG
CCTCCCACAAGGGGTCCCTCGGCCACTCCTTCAAAGCAGCGGCTGCCACG
GCGGCTTTGTCCGTCGTGTCGTTCGGTGGCAAGCACAACACCAACAGGCA
GCGAGTCTGCCGGCCTATCCAAGACGGGAATGGCGAGTTTGATGTAGGGC
CGTCATCGCACGAAAACGAAGATGTCTCGCCAACAGCATCAGCAGCAGCA
ACCTTGCCCCGTCCAGCGTTTTACCCCGGGCTTAAGCCCACAAGGGAAGC
AAATTCTGCCGCAACGGCTTCATCCGTGAAAATGACGGGTGGTGGCAGTG
GTGGTGGTGGTATGGGGCTGGGCAGTGCCCTTTTTGGTGGGTTTGGACTG
TTGGGCAACTCTGCTCCTGCCGGGGGCCCGAGCATGGACGATAGCAACTT
CATAGCCCGCCTCGGCAGCCTGGCCGGCATGCGGTTGGAGCTTCAAGACT
CAAGCCCAGAGCGTCACACACATGGTGATGGGGTTAATGAGATGGTCCCT
GCTTCTCCTTTTAACGAAGGGTACGGCACCCGCCGTCGCCTTCCCCACGA
CTTTTCGCTCAAGTCCAGCCTATGCTTCGAATCCGCCCAGCCATTCAATT
GGTGTCGGCCCATTCCTGGTTCTGCGGAAGCCAAGGGCATGCTCCGCCAC
CTTCGAGAGAGCATTGATCCCCCCTCTCCCCCCTCTCCTCAGCCGCAAGA
AGACGATGGTTCAGCTGTTCCCTGTGCCAGGCCTCCTGCTTCTTTCGATG
AGGCGCTCGAGATATGGGTTGCTGCTTCTTTATCCTATGCCCATCCTGCC
GAACCTCTAGCGGCATCCATGCATTTGCCATTACAAATGGTGCGGAAAAC
GATGGAAAACGCTTTTGCTCGTGATCCTGCCCCGGTGGTAGGGGTGGATG
AGGGAGCGAATGGGGGAGGGGGGGGAGGGAACAACAAGCAGACGCGACAG
CCAGATCCGGCGTTGATGCTGTATAAGAGATTAAGGCAGTGGGAGGAGGC
CTTTAGACACTTGTACACTCTTTACAGGCATGATCCTTCGCTCACATTTT
ATTCGCAAGCCCCGGACTTCACGGTAGTTTGGACGAGGGAGGAGGATGGG
GGGGGCGGGAGGGACGAAGTTGGGGATGGCATGGAGTATGATGGTGTTAA
AGAGGAGAGGGGAAAAGGAGGGACGAAGGAAGTGTCGCAGCTGAAGGTGG
TTATTTCGCATTCCAGACGCTGGCTGCGGGCACGGCTTCGTGAGGCGGAT
ATCCCTTTTTCTGTCCCCCTAGCGCCGGACGCCGAGGCTCGTGACAACGA
AGAGGCAACCCTCCCACATATCACTGTTATGGCCGGTGGTGGTAATAGTG
ACAGGATACCGAGAGGCAAGGTAGGAGCGGAGGAAGAGTTGCAAGAACTG
TTGTCATCCGTGACGGGCCAGATGGCTGGAGGGATGGGGATGGTGGAGAT
GCAGAGCCGACGTCGACCCAAGCACCTGAATGACTTACCTCGGCAACGAT
CACAGTTGGTGCTCAAGGGGCATGAGGCTGTACATGGCTTGTTTAATTTC
TTGCTGAATTTGGAGAATGGCTTGGGTCCCAGTTCTGTTGCGGATGTCCC
TCGTTTGTTGGCAGATCGGCCTTTTATGCATGGGAGCATGCAAAGGCTAC
AGGTGGCGTTCAATGGACAGGTGCAACGGACGCTGCTCCAGGGAAGTGGT
GGCGATGCGAGGGGAAAGCGTGGGAGGTATTTTGCGGATGAGGGGGAGGA
GGATGAGGGGGAGGAGAAAGGGATGGGGGGGATGGAGACTGTGTATCAGC
TTAAGTTGTGTGGTCCGGTGTTGCCTGGGCAGCTTAGGCGGTTGGCGGGG
GTGGTGCATTTTTTGCAGCAGGATCGAAAAGGGAAGGAAGTAGGGGTGGG
GAAGAATAGGTGGAAGAAGCAGAAGACATCGGGGTCGGGAGGGGATTGGA
GCTTGGTAATGGAGCCGTTGAATGGAACCGAGGCGTTTAACTTGCAGGAG
GGAGGGAGGGAGGGAGAGGTAGGGGGAGGAGGAAGGGGAGGAGAATTGGG
TCGGACGCGAATGCGGAGTTTGAAGGAGGTGAGGTGGAGCGCGGAGAAGG
AAATGTTTGCTGTTATTACCACATGTTAGGATCGGAAGGGAAGTGAAATG
GGAAGCGAATAACATGAAAGGGAAGAGGGAGGCAAGAAAAACGAGAAATG
TAAGAAAGACGGTCATGGAGTACACAGGTAGAGTGAGGCGAAATGGTACA
CCCACGCAAAGTAAACCCTGTTCGAGACTATCCGTTCTGTATGTGAGTCT
TTGAATGCATGTGTGCGCGATCCACATGGCAAGAAGAATCTCACACAACT
GCAAAAAGGAGAGAAACCCTTAGAATTGCGTTCAAGA

Coding sequence (CDS) from alignment at scaffold_11:365406..368092+

>mRNA_5703 ID=mRNA_5703|Name=jgi.p|Nanoce1779_2|630488|organism=Nannochloropsis oceanica|type=CDS|length=2391bp|location=Sequence derived from alignment at scaffold_11:365406..368092+ (Nannochloropsis oceanica)
ATGGATCTCTCTGTGGCCGCCCCGCTGCCCGATTCTGGAACTACCATTTC
CTCCACCGTCGTTAAACAAAGCAGCACGCGGCGCGCGGTTCTTGGGGACA
AGGAGAACACAAGCACCACGCATAAGCTGGAGACCTCTGCCACAAACACG
CTCTTGAGCACCAGTATCGCCGGAGGAACCGCACTGTCCTTGAAGCCAGG
CTTTCTCTCCAAGCGACGGGCCTTAGTGCGGTCGAGCAGCACGCCCCCTG
CCTCATCATCTGCCTCCCACAAGGGGTCCCTCGGCCACTCCTTCAAAGCA
GCGGCTGCCACGGCGGCTTTGTCCGTCGTGTCGTTCGGTGGCAAGCACAA
CACCAACAGGCAGCGAGTCTGCCGGCCTATCCAAGACGGGAATGGCGAGT
TTGATGTAGGGCCGTCATCGCACGAAAACGAAGATGTCTCGCCAACAGCA
TCAGCAGCAGCAACCTTGCCCCGTCCAGCGTTTTACCCCGGGCTTAAGCC
CACAAGGGAAGCAAATTCTGCCGCAACGGCTTCATCCGTGAAAATGACGG
GTGGTGGCAGTGGTGGTGGTGGTATGGGGCTGGGCAGTGCCCTTTTTGGT
GGGTTTGGACTGTTGGGCAACTCTGCTCCTGCCGGGGGCCCGAGCATGGA
CGATAGCAACTTCATAGCCCGCCTCGGCAGCCTGGCCGGCATGCGGTTGG
AGCTTCAAGACTCAAGCCCAGAGCGTCACACACATGGTGATGGGGTTAAT
GAGATGGTCCCTGCTTCTCCTTTTAACGAAGGGTACGGCACCCGCCGTCG
CCTTCCCCACGACTTTTCGCTCAAGTCCAGCCTATGCTTCGAATCCGCCC
AGCCATTCAATTGGTGTCGGCCCATTCCTGGTTCTGCGGAAGCCAAGGGC
ATGCTCCGCCACCTTCGAGAGAGCATTGATCCCCCCTCTCCCCCCTCTCC
TCAGCCGCAAGAAGACGATGGTTCAGCTGTTCCCTGTGCCAGGCCTCCTG
CTTCTTTCGATGAGGCGCTCGAGATATGGGTTGCTGCTTCTTTATCCTAT
GCCCATCCTGCCGAACCTCTAGCGGCATCCATGCATTTGCCATTACAAAT
GGTGCGGAAAACGATGGAAAACGCTTTTGCTCGTGATCCTGCCCCGGTGG
TAGGGGTGGATGAGGGAGCGAATGGGGGAGGGGGGGGAGGGAACAACAAG
CAGACGCGACAGCCAGATCCGGCGTTGATGCTGTATAAGAGATTAAGGCA
GTGGGAGGAGGCCTTTAGACACTTGTACACTCTTTACAGGCATGATCCTT
CGCTCACATTTTATTCGCAAGCCCCGGACTTCACGGTAGTTTGGACGAGG
GAGGAGGATGGGGGGGGCGGGAGGGACGAAGTTGGGGATGGCATGGAGTA
TGATGGTGTTAAAGAGGAGAGGGGAAAAGGAGGGACGAAGGAAGTGTCGC
AGCTGAAGGTGGTTATTTCGCATTCCAGACGCTGGCTGCGGGCACGGCTT
CGTGAGGCGGATATCCCTTTTTCTGTCCCCCTAGCGCCGGACGCCGAGGC
TCGTGACAACGAAGAGGCAACCCTCCCACATATCACTGTTATGGCCGGTG
GTGGTAATAGTGACAGGATACCGAGAGGCAAGGTAGGAGCGGAGGAAGAG
TTGCAAGAACTGTTGTCATCCGTGACGGGCCAGATGGCTGGAGGGATGGG
GATGGTGGAGATGCAGAGCCGACGTCGACCCAAGCACCTGAATGACTTAC
CTCGGCAACGATCACAGTTGGTGCTCAAGGGGCATGAGGCTGTACATGGC
TTGTTTAATTTCTTGCTGAATTTGGAGAATGGCTTGGGTCCCAGTTCTGT
TGCGGATGTCCCTCGTTTGTTGGCAGATCGGCCTTTTATGCATGGGAGCA
TGCAAAGGCTACAGGTGGCGTTCAATGGACAGGTGCAACGGACGCTGCTC
CAGGGAAGTGGTGGCGATGCGAGGGGAAAGCGTGGGAGGTATTTTGCGGA
TGAGGGGGAGGAGGATGAGGGGGAGGAGAAAGGGATGGGGGGGATGGAGA
CTGTGTATCAGCTTAAGTTGTGTGGTCCGGTGTTGCCTGGGCAGCTTAGG
CGGTTGGCGGGGGTGGTGCATTTTTTGCAGCAGGATCGAAAAGGGAAGGA
AGTAGGGGTGGGGAAGAATAGGTGGAAGAAGCAGAAGACATCGGGGTCGG
GAGGGGATTGGAGCTTGGTAATGGAGCCGTTGAATGGAACCGAGGCGTTT
AACTTGCAGGAGGGAGGGAGGGAGGGAGAGGTAGGGGGAGGAGGAAGGGG
AGGAGAATTGGGTCGGACGCGAATGCGGAGTTTGAAGGAGGTGAGGTGGA
GCGCGGAGAAGGAAATGTTTGCTGTTATTACCACATGTTAG

Synonyms

Publications