jgi.p|Nanoce1779_2|555519, mRNA_5702 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|555519
Unique Name	mRNA_5702
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2707
Alignment location	scaffold_11:362399..365105 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	555605
Track	FilteredModels2
ProteinId	555519

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_11	supercontig	scaffold_11:362399..365105 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|555519	gene_5702	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|555519	mRNA_5702-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5702	CDS_5702	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_11:362399..365105+
coding sequence from alignment at scaffold_11:362399..365105+

mRNA sequence

>mRNA_5702 ID=mRNA_5702|Name=jgi.p|Nanoce1779_2|555519|organism=Nannochloropsis oceanica|type=mRNA|length=2707bp
CAGGAGGGAGGGAGGGAGGGAGGGGCAGTGTTGAGTGCCTCGGCGGTGCT
ATTGCTCGATGGGCGGTACCAGAAGGTAGGGTCAATGGAAGAGAGTCCGC
AGACTTCGGAGGATGCAGAGGTTTGGTTGCCGTTGCTCGACAAGGAGGGA
AACCCCGCCGGGAGGCTTTTGGTCCGAGTCGCCATTTTTGCTAGCGCTGG
AGCAGCAGACACAGCAGCAGCACCACCGGTGATGGATGATTTTGACTTCG
GCGTTGGCGAAACAGTACAGGATCCTTGTGTGGTGCAGCCTCCTTTTGAG
ACGATCCAACGGGCATGCTACGAGTGGATGAAGCAAGCGGGCTTCTCTGG
CCGCCCTCCTCGGGAAGGCGACTTCTTCTCTGTCCCTTCCTCTTCCGGCA
CCAGCACGTACAATACCAGCACCACCAGCAGTATCAACAGCACCAGCGAC
AAGATACAGCTCTCGTACCCCCTAGAGTGGATTCAGCGTCACATCACTTC
GCTTGCTCAAGAGCTAGCGGTGCTACAGACCTCCCTACGCCTCTGGGAGG
AAGCAGCCAATGACGGAAGAGGCTTCCGCAGCTCAGAGCACAAAATGACC
AAGGAGCTACAGGGCGTCCCTACCAACGTCCATTCCCAGACATTTTCAGT
CACTAACATGTGCTCTTTTACAGGGTCTCGCTTCTCCCCTATTCCCGCTC
CTTGTTCCTCCTCCTCTATCTCCTCCTCCTCCTGTTCCTCCTCCCCCTCC
TCCTCCTCCACCTCTGCTGGGTCCAGCATCGTCCAAGAGTTGCTTTCAAA
TATCCCTATCACCGCCCCTTCACAGTCTCCTTCCCCCTCCTTTTCTCCCA
AAATTTTTTATTACGACGTCGTCTCGACCGGCGCCCCAACCGCCCACGCT
CTCGGCTTCCGAGGTGGTGGCCTCCTCACCCACGACCTTCAACTAGCCTC
CCTCCAGAAAGACATCCTCGGTCTCGATCAATCCCTTTTCCTCCCCCTCA
AGCGGCAAAACCAGCCCTTTCCTTCCCTCTCCATCCTCCCCACCGGGCCC
ACAGGCTTACTAAGCAACGACCTACTACGTAAACTTCTAAAATTTGAAGC
CATGTCAAGCAAAATCGCCGTCCGTCGCGCCCTTGTACTCTCTCAAGCCC
TTGGAATCGCCACAACTTCCCTCGCGACAAAGCTGGACATCATGCTCACT
GAAGATGCCAATCCCTCCCTCATCATCCGCACCGCGGAAAACATGACCAA
AGTCGGGTTTTTGGTGTGCTTCCAAGGGCTAATATCAACGATTGGCAAAG
AGCGTGGGATGCTTGAAGACGTAGCCGTGGCCATGGAGATGGCGTCCCTT
TTCTCCTTCGAGATCCGTCCCAAATCAGCCGCGTCCCCCTCCTGCTCCTC
TTCGTCCTTGCAGTCACCACAAGCCCACAGCCCCGCCCCTGCTCCAACGC
CCCTCGATCATAACACCCAGGACCTGCTGTTGGACTTTGGCATACCTTCT
TCCTCTCCCTTCCCCCACCCTTCTCCTCCCCCTTCCTCTCCTTCCATTAT
TCCATTGGCAACTAGAGGTCCTGCACCGACAGAGCCTGTGGATGGCAGCA
AAGCCTCCCTTCTTGCATTGGACATTGAGTTTGACGAAGCACAAAGACGT
GTCCGCCTCTTTTTGGATCCCGTGGCATATGAACGTCTTCCCGGTATCTT
GCGCCAGCATGGCTGTCAGCAGCAGCAATTAGCGGGAGAAGCCGCAGGTG
GATTGGTGGTGCCTTTAGTGGCAGTGCTCTTTACCCAGGGCATCGATGCC
AAGCAGTCCCTCGCCAATTTCTCTAACCAACTTAAAAAGGACCAAGACAT
GGAAGACAACGACGATGACACCCTCTCCAGCAGCAGAATCAAAGCGGCCA
CCAAAAGAGTGCGAGGAGAATCGACGATTCAACAACAGATTAATCGACGA
TCGACAAGGATCTTGAATGATTACTGCCATCGTTGCTATCCTTGTGTGGT
GCCTCCTCCGAGGGTGTACCGTCCGTTTGACCGCTTTGTGGCAGAGAGGC
TGGACGTGGCGAAAAAATCACTAGTACATGGTTCGACCGAGGATTTTATC
AGATCAGTGGACAAGATTCTCGTGCATCCGCTTTGTGAGGGGTTGAAAAA
AGCGTTGAAACGCGATAACGGTATGCATAAAAACGTGGATTTATTGAGGG
AGCAAGAGCGGGTGACTTTAGAAGTTGGGGGTGGGCAGGTGATCTTTTGC
AAATCCGGCAAGGACCGGACGGGCATGGCGGTAACCCTGTATCAAGCGAG
ATTGCTGGCTGAGAAACATGGGTGCGGAGAGGTGGGGAGTGGGGGCGTGG
AGAGGTTGGTGCGGGATGCGAATGTGATGCGTTTGCATGGAACGCGGTTA
TTGCTCTGTGACAAGAACACGGGGCGTTTCAAGTTTGCTTTCAATAATTT
GCAGCTTCAATTTATGCCGGCATTGTACAAGCCCCCGACGGAGACAGTGG
AGCATTTATTTGATTCGATCATGAACAGGGATACGACTTAGGTAATTGGT
TTGGTGCAAGGGGGGAAAGCTTTGTTGATATCGGCGCGGTCAAATTGATG
AATATAAACATGTAATTAAAGTTTAAGAGAGCTCTGTGCGTTTGATACAT
GTGTGTAAGTGAAGTAGGTACTCCAGAATCAAAAGAAATAAAGCTACTTC
TGGAGCC

protein sequence of jgi.p|Nanoce1779_2|555519

>mRNA_5702-protein ID=mRNA_5702-protein|Name=jgi.p|Nanoce1779_2|555519|organism=Nannochloropsis oceanica|type=polypeptide|length=819bp
MEESPQTSEDAEVWLPLLDKEGNPAGRLLVRVAIFASAGAADTAAAPPVM
DDFDFGVGETVQDPCVVQPPFETIQRACYEWMKQAGFSGRPPREGDFFSV
PSSSGTSTYNTSTTSSINSTSDKIQLSYPLEWIQRHITSLAQELAVLQTS
LRLWEEAANDGRGFRSSEHKMTKELQGVPTNVHSQTFSVTNMCSFTGSRF
SPIPAPCSSSSISSSSCSSSPSSSSTSAGSSIVQELLSNIPITAPSQSPS
PSFSPKIFYYDVVSTGAPTAHALGFRGGGLLTHDLQLASLQKDILGLDQS
LFLPLKRQNQPFPSLSILPTGPTGLLSNDLLRKLLKFEAMSSKIAVRRAL
VLSQALGIATTSLATKLDIMLTEDANPSLIIRTAENMTKVGFLVCFQGLI
STIGKERGMLEDVAVAMEMASLFSFEIRPKSAASPSCSSSSLQSPQAHSP
APAPTPLDHNTQDLLLDFGIPSSSPFPHPSPPPSSPSIIPLATRGPAPTE
PVDGSKASLLALDIEFDEAQRRVRLFLDPVAYERLPGILRQHGCQQQQLA
GEAAGGLVVPLVAVLFTQGIDAKQSLANFSNQLKKDQDMEDNDDDTLSSS
RIKAATKRVRGESTIQQQINRRSTRILNDYCHRCYPCVVPPPRVYRPFDR
FVAERLDVAKKSLVHGSTEDFIRSVDKILVHPLCEGLKKALKRDNGMHKN
VDLLREQERVTLEVGGGQVIFCKSGKDRTGMAVTLYQARLLAEKHGCGEV
GSGGVERLVRDANVMRLHGTRLLLCDKNTGRFKFAFNNLQLQFMPALYKP
PTETVEHLFDSIMNRDTT*

mRNA from alignment at scaffold_11:362399..365105+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5702 ID=mRNA_5702|Name=jgi.p|Nanoce1779_2|555519|organism=Nannochloropsis oceanica|type=mRNA|length=2707bp|location=Sequence derived from alignment at scaffold_11:362399..365105+ (Nannochloropsis oceanica)
CAGGAGGGAGGGAGGGAGGGAGGGGCAGTGTTGAGTGCCTCGGCGGTGCT
ATTGCTCGATGGGCGGTACCAGAAGGTAGGGTCAATGGAAGAGAGTCCGC
AGACTTCGGAGGATGCAGAGGTTTGGTTGCCGTTGCTCGACAAGGAGGGA
AACCCCGCCGGGAGGCTTTTGGTCCGAGTCGCCATTTTTGCTAGCGCTGG
AGCAGCAGACACAGCAGCAGCACCACCGGTGATGGATGATTTTGACTTCG
GCGTTGGCGAAACAGTACAGGATCCTTGTGTGGTGCAGCCTCCTTTTGAG
ACGATCCAACGGGCATGCTACGAGTGGATGAAGCAAGCGGGCTTCTCTGG
CCGCCCTCCTCGGGAAGGCGACTTCTTCTCTGTCCCTTCCTCTTCCGGCA
CCAGCACGTACAATACCAGCACCACCAGCAGTATCAACAGCACCAGCGAC
AAGATACAGCTCTCGTACCCCCTAGAGTGGATTCAGCGTCACATCACTTC
GCTTGCTCAAGAGCTAGCGGTGCTACAGACCTCCCTACGCCTCTGGGAGG
AAGCAGCCAATGACGGAAGAGGCTTCCGCAGCTCAGAGCACAAAATGACC
AAGGAGCTACAGGGCGTCCCTACCAACGTCCATTCCCAGACATTTTCAGT
CACTAACATGTGCTCTTTTACAGGGTCTCGCTTCTCCCCTATTCCCGCTC
CTTGTTCCTCCTCCTCTATCTCCTCCTCCTCCTGTTCCTCCTCCCCCTCC
TCCTCCTCCACCTCTGCTGGGTCCAGCATCGTCCAAGAGTTGCTTTCAAA
TATCCCTATCACCGCCCCTTCACAGTCTCCTTCCCCCTCCTTTTCTCCCA
AAATTTTTTATTACGACGTCGTCTCGACCGGCGCCCCAACCGCCCACGCT
CTCGGCTTCCGAGGTGGTGGCCTCCTCACCCACGACCTTCAACTAGCCTC
CCTCCAGAAAGACATCCTCGGTCTCGATCAATCCCTTTTCCTCCCCCTCA
AGCGGCAAAACCAGCCCTTTCCTTCCCTCTCCATCCTCCCCACCGGGCCC
ACAGGCTTACTAAGCAACGACCTACTACGTAAACTTCTAAAATTTGAAGC
CATGTCAAGCAAAATCGCCGTCCGTCGCGCCCTTGTACTCTCTCAAGCCC
TTGGAATCGCCACAACTTCCCTCGCGACAAAGCTGGACATCATGCTCACT
GAAGATGCCAATCCCTCCCTCATCATCCGCACCGCGGAAAACATGACCAA
AGTCGGGTTTTTGGTGTGCTTCCAAGGGCTAATATCAACGATTGGCAAAG
AGCGTGGGATGCTTGAAGACGTAGCCGTGGCCATGGAGATGGCGTCCCTT
TTCTCCTTCGAGATCCGTCCCAAATCAGCCGCGTCCCCCTCCTGCTCCTC
TTCGTCCTTGCAGTCACCACAAGCCCACAGCCCCGCCCCTGCTCCAACGC
CCCTCGATCATAACACCCAGGACCTGCTGTTGGACTTTGGCATACCTTCT
TCCTCTCCCTTCCCCCACCCTTCTCCTCCCCCTTCCTCTCCTTCCATTAT
TCCATTGGCAACTAGAGGTCCTGCACCGACAGAGCCTGTGGATGGCAGCA
AAGCCTCCCTTCTTGCATTGGACATTGAGTTTGACGAAGCACAAAGACGT
GTCCGCCTCTTTTTGGATCCCGTGGCATATGAACGTCTTCCCGGTATCTT
GCGCCAGCATGGCTGTCAGCAGCAGCAATTAGCGGGAGAAGCCGCAGGTG
GATTGGTGGTGCCTTTAGTGGCAGTGCTCTTTACCCAGGGCATCGATGCC
AAGCAGTCCCTCGCCAATTTCTCTAACCAACTTAAAAAGGACCAAGACAT
GGAAGACAACGACGATGACACCCTCTCCAGCAGCAGAATCAAAGCGGCCA
CCAAAAGAGTGCGAGGAGAATCGACGATTCAACAACAGATTAATCGACGA
TCGACAAGGATCTTGAATGATTACTGCCATCGTTGCTATCCTTGTGTGGT
GCCTCCTCCGAGGGTGTACCGTCCGTTTGACCGCTTTGTGGCAGAGAGGC
TGGACGTGGCGAAAAAATCACTAGTACATGGTTCGACCGAGGATTTTATC
AGATCAGTGGACAAGATTCTCGTGCATCCGCTTTGTGAGGGGTTGAAAAA
AGCGTTGAAACGCGATAACGGTATGCATAAAAACGTGGATTTATTGAGGG
AGCAAGAGCGGGTGACTTTAGAAGTTGGGGGTGGGCAGGTGATCTTTTGC
AAATCCGGCAAGGACCGGACGGGCATGGCGGTAACCCTGTATCAAGCGAG
ATTGCTGGCTGAGAAACATGGGTGCGGAGAGGTGGGGAGTGGGGGCGTGG
AGAGGTTGGTGCGGGATGCGAATGTGATGCGTTTGCATGGAACGCGGTTA
TTGCTCTGTGACAAGAACACGGGGCGTTTCAAGTTTGCTTTCAATAATTT
GCAGCTTCAATTTATGCCGGCATTGTACAAGCCCCCGACGGAGACAGTGG
AGCATTTATTTGATTCGATCATGAACAGGGATACGACTTAGGTAATTGGT
TTGGTGCAAGGGGGGAAAGCTTTGTTGATATCGGCGCGGTCAAATTGATG
AATATAAACATGTAATTAAAGTTTAAGAGAGCTCTGTGCGTTTGATACAT
GTGTGTAAGTGAAGTAGGTACTCCAGAATCAAAAGAAATAAAGCTACTTC
TGGAGCC

Coding sequence (CDS) from alignment at scaffold_11:362399..365105+

>mRNA_5702 ID=mRNA_5702|Name=jgi.p|Nanoce1779_2|555519|organism=Nannochloropsis oceanica|type=CDS|length=2457bp|location=Sequence derived from alignment at scaffold_11:362399..365105+ (Nannochloropsis oceanica)
ATGGAAGAGAGTCCGCAGACTTCGGAGGATGCAGAGGTTTGGTTGCCGTT
GCTCGACAAGGAGGGAAACCCCGCCGGGAGGCTTTTGGTCCGAGTCGCCA
TTTTTGCTAGCGCTGGAGCAGCAGACACAGCAGCAGCACCACCGGTGATG
GATGATTTTGACTTCGGCGTTGGCGAAACAGTACAGGATCCTTGTGTGGT
GCAGCCTCCTTTTGAGACGATCCAACGGGCATGCTACGAGTGGATGAAGC
AAGCGGGCTTCTCTGGCCGCCCTCCTCGGGAAGGCGACTTCTTCTCTGTC
CCTTCCTCTTCCGGCACCAGCACGTACAATACCAGCACCACCAGCAGTAT
CAACAGCACCAGCGACAAGATACAGCTCTCGTACCCCCTAGAGTGGATTC
AGCGTCACATCACTTCGCTTGCTCAAGAGCTAGCGGTGCTACAGACCTCC
CTACGCCTCTGGGAGGAAGCAGCCAATGACGGAAGAGGCTTCCGCAGCTC
AGAGCACAAAATGACCAAGGAGCTACAGGGCGTCCCTACCAACGTCCATT
CCCAGACATTTTCAGTCACTAACATGTGCTCTTTTACAGGGTCTCGCTTC
TCCCCTATTCCCGCTCCTTGTTCCTCCTCCTCTATCTCCTCCTCCTCCTG
TTCCTCCTCCCCCTCCTCCTCCTCCACCTCTGCTGGGTCCAGCATCGTCC
AAGAGTTGCTTTCAAATATCCCTATCACCGCCCCTTCACAGTCTCCTTCC
CCCTCCTTTTCTCCCAAAATTTTTTATTACGACGTCGTCTCGACCGGCGC
CCCAACCGCCCACGCTCTCGGCTTCCGAGGTGGTGGCCTCCTCACCCACG
ACCTTCAACTAGCCTCCCTCCAGAAAGACATCCTCGGTCTCGATCAATCC
CTTTTCCTCCCCCTCAAGCGGCAAAACCAGCCCTTTCCTTCCCTCTCCAT
CCTCCCCACCGGGCCCACAGGCTTACTAAGCAACGACCTACTACGTAAAC
TTCTAAAATTTGAAGCCATGTCAAGCAAAATCGCCGTCCGTCGCGCCCTT
GTACTCTCTCAAGCCCTTGGAATCGCCACAACTTCCCTCGCGACAAAGCT
GGACATCATGCTCACTGAAGATGCCAATCCCTCCCTCATCATCCGCACCG
CGGAAAACATGACCAAAGTCGGGTTTTTGGTGTGCTTCCAAGGGCTAATA
TCAACGATTGGCAAAGAGCGTGGGATGCTTGAAGACGTAGCCGTGGCCAT
GGAGATGGCGTCCCTTTTCTCCTTCGAGATCCGTCCCAAATCAGCCGCGT
CCCCCTCCTGCTCCTCTTCGTCCTTGCAGTCACCACAAGCCCACAGCCCC
GCCCCTGCTCCAACGCCCCTCGATCATAACACCCAGGACCTGCTGTTGGA
CTTTGGCATACCTTCTTCCTCTCCCTTCCCCCACCCTTCTCCTCCCCCTT
CCTCTCCTTCCATTATTCCATTGGCAACTAGAGGTCCTGCACCGACAGAG
CCTGTGGATGGCAGCAAAGCCTCCCTTCTTGCATTGGACATTGAGTTTGA
CGAAGCACAAAGACGTGTCCGCCTCTTTTTGGATCCCGTGGCATATGAAC
GTCTTCCCGGTATCTTGCGCCAGCATGGCTGTCAGCAGCAGCAATTAGCG
GGAGAAGCCGCAGGTGGATTGGTGGTGCCTTTAGTGGCAGTGCTCTTTAC
CCAGGGCATCGATGCCAAGCAGTCCCTCGCCAATTTCTCTAACCAACTTA
AAAAGGACCAAGACATGGAAGACAACGACGATGACACCCTCTCCAGCAGC
AGAATCAAAGCGGCCACCAAAAGAGTGCGAGGAGAATCGACGATTCAACA
ACAGATTAATCGACGATCGACAAGGATCTTGAATGATTACTGCCATCGTT
GCTATCCTTGTGTGGTGCCTCCTCCGAGGGTGTACCGTCCGTTTGACCGC
TTTGTGGCAGAGAGGCTGGACGTGGCGAAAAAATCACTAGTACATGGTTC
GACCGAGGATTTTATCAGATCAGTGGACAAGATTCTCGTGCATCCGCTTT
GTGAGGGGTTGAAAAAAGCGTTGAAACGCGATAACGGTATGCATAAAAAC
GTGGATTTATTGAGGGAGCAAGAGCGGGTGACTTTAGAAGTTGGGGGTGG
GCAGGTGATCTTTTGCAAATCCGGCAAGGACCGGACGGGCATGGCGGTAA
CCCTGTATCAAGCGAGATTGCTGGCTGAGAAACATGGGTGCGGAGAGGTG
GGGAGTGGGGGCGTGGAGAGGTTGGTGCGGGATGCGAATGTGATGCGTTT
GCATGGAACGCGGTTATTGCTCTGTGACAAGAACACGGGGCGTTTCAAGT
TTGCTTTCAATAATTTGCAGCTTCAATTTATGCCGGCATTGTACAAGCCC
CCGACGGAGACAGTGGAGCATTTATTTGATTCGATCATGAACAGGGATAC
GACTTAG

Synonyms

Publications