jgi.p|Nanoce1779_2|528675, mRNA_5700 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|528675
Unique NamemRNA_5700
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length810
Alignment locationscaffold_11:353194..354003 +

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Properties
Property NameValue
TranscriptId528761
TrackFilteredModels2
ProteinId528675
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:353194..354003 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|528675gene_5700Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|528675mRNA_5700-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5700CDS_5700Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5700 ID=mRNA_5700|Name=jgi.p|Nanoce1779_2|528675|organism=Nannochloropsis oceanica|type=mRNA|length=810bp
ATGCGTGACAATCGCCCTGTGGGTGACGAGAACTGCAGCGGCAACAGCAA
TGGGGTTGGGGAGCCCGAACAGCAGATGATTGACTACACCCCTCACTACG
AGGTTCTCGTCAAAGAAGGGGCGACGCATTTTGATTCCGTCTCGGCCGCC
ATCTTCGAGCATATTGACAACTCCATCACGGCCTTCAAAATTCTGCCTCC
TGAGTACGAGCGCAAGGTCGAGGTGCAGATTCACGTGCCGGCTAAAGGCT
TGTATGATGCCGAGCCCATCTACCTGGCCATCTGGGACAATGCAGGTGGG
ATGACGACCAAGCAGCTCGAGGCCTACTTCACGGCAGCGCTCGGACGGGA
GACGCGCGGCTTGGAGCCCAAGGGCAAGGGGGAGGCGACTGCGCGGATGG
CGCACTTGGCAGGGAACTTGTCCAAGTTCGGTGTGGGTGCCTTGCAGTCC
TTTGCCTACCTGGGCACGCAGCTGAAGGTGATTACGAAGGACAAGGAGGA
AGGAAAAGTCAGATACTACAAGATCGATAAGGATTATTTCAAGCAGAAGG
AGGAGAGCCACGGGCGAGACTCCGTGTTTAAGGGTGCTGTCAGGGTAGTA
GAGACGGCGGAGAAGGCCTTGGAGGAAGTTGAACGCCGCACACAGCTGGT
GCAGCACCTACAACAATGGGACGAGCTCCCTCACTTCACTTGTGTCTTGA
TTCGGCTTCAAGACATCCATAAGCGAGAGATTTTTGAGACGCAAGGCTCG
AAAATTCTTTATGATTTGGCAGATGTTTTCTACTACTATCTTAAGCCTGA
CGCGTTTCCC
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protein sequence of jgi.p|Nanoce1779_2|528675

>mRNA_5700-protein ID=mRNA_5700-protein|Name=jgi.p|Nanoce1779_2|528675|organism=Nannochloropsis oceanica|type=polypeptide|length=270bp
MRDNRPVGDENCSGNSNGVGEPEQQMIDYTPHYEVLVKEGATHFDSVSAA
IFEHIDNSITAFKILPPEYERKVEVQIHVPAKGLYDAEPIYLAIWDNAGG
MTTKQLEAYFTAALGRETRGLEPKGKGEATARMAHLAGNLSKFGVGALQS
FAYLGTQLKVITKDKEEGKVRYYKIDKDYFKQKEESHGRDSVFKGAVRVV
ETAEKALEEVERRTQLVQHLQQWDELPHFTCVLIRLQDIHKREIFETQGS
KILYDLADVFYYYLKPDAFP
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mRNA from alignment at scaffold_11:353194..354003+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5700 ID=mRNA_5700|Name=jgi.p|Nanoce1779_2|528675|organism=Nannochloropsis oceanica|type=mRNA|length=810bp|location=Sequence derived from alignment at scaffold_11:353194..354003+ (Nannochloropsis oceanica)
ATGCGTGACAATCGCCCTGTGGGTGACGAGAACTGCAGCGGCAACAGCAA
TGGGGTTGGGGAGCCCGAACAGCAGATGATTGACTACACCCCTCACTACG
AGGTTCTCGTCAAAGAAGGGGCGACGCATTTTGATTCCGTCTCGGCCGCC
ATCTTCGAGCATATTGACAACTCCATCACGGCCTTCAAAATTCTGCCTCC
TGAGTACGAGCGCAAGGTCGAGGTGCAGATTCACGTGCCGGCTAAAGGCT
TGTATGATGCCGAGCCCATCTACCTGGCCATCTGGGACAATGCAGGTGGG
ATGACGACCAAGCAGCTCGAGGCCTACTTCACGGCAGCGCTCGGACGGGA
GACGCGCGGCTTGGAGCCCAAGGGCAAGGGGGAGGCGACTGCGCGGATGG
CGCACTTGGCAGGGAACTTGTCCAAGTTCGGTGTGGGTGCCTTGCAGTCC
TTTGCCTACCTGGGCACGCAGCTGAAGGTGATTACGAAGGACAAGGAGGA
AGGAAAAGTCAGATACTACAAGATCGATAAGGATTATTTCAAGCAGAAGG
AGGAGAGCCACGGGCGAGACTCCGTGTTTAAGGGTGCTGTCAGGGTAGTA
GAGACGGCGGAGAAGGCCTTGGAGGAAGTTGAACGCCGCACACAGCTGGT
GCAGCACCTACAACAATGGGACGAGCTCCCTCACTTCACTTGTGTCTTGA
TTCGGCTTCAAGACATCCATAAGCGAGAGATTTTTGAGACGCAAGGCTCG
AAAATTCTTTATGATTTGGCAGATGTTTTCTACTACTATCTTAAGCCTGA
CGCGTTTCCC
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Coding sequence (CDS) from alignment at scaffold_11:353194..354003+

>mRNA_5700 ID=mRNA_5700|Name=jgi.p|Nanoce1779_2|528675|organism=Nannochloropsis oceanica|type=CDS|length=810bp|location=Sequence derived from alignment at scaffold_11:353194..354003+ (Nannochloropsis oceanica)
ATGCGTGACAATCGCCCTGTGGGTGACGAGAACTGCAGCGGCAACAGCAA
TGGGGTTGGGGAGCCCGAACAGCAGATGATTGACTACACCCCTCACTACG
AGGTTCTCGTCAAAGAAGGGGCGACGCATTTTGATTCCGTCTCGGCCGCC
ATCTTCGAGCATATTGACAACTCCATCACGGCCTTCAAAATTCTGCCTCC
TGAGTACGAGCGCAAGGTCGAGGTGCAGATTCACGTGCCGGCTAAAGGCT
TGTATGATGCCGAGCCCATCTACCTGGCCATCTGGGACAATGCAGGTGGG
ATGACGACCAAGCAGCTCGAGGCCTACTTCACGGCAGCGCTCGGACGGGA
GACGCGCGGCTTGGAGCCCAAGGGCAAGGGGGAGGCGACTGCGCGGATGG
CGCACTTGGCAGGGAACTTGTCCAAGTTCGGTGTGGGTGCCTTGCAGTCC
TTTGCCTACCTGGGCACGCAGCTGAAGGTGATTACGAAGGACAAGGAGGA
AGGAAAAGTCAGATACTACAAGATCGATAAGGATTATTTCAAGCAGAAGG
AGGAGAGCCACGGGCGAGACTCCGTGTTTAAGGGTGCTGTCAGGGTAGTA
GAGACGGCGGAGAAGGCCTTGGAGGAAGTTGAACGCCGCACACAGCTGGT
GCAGCACCTACAACAATGGGACGAGCTCCCTCACTTCACTTGTGTCTTGA
TTCGGCTTCAAGACATCCATAAGCGAGAGATTTTTGAGACGCAAGGCTCG
AAAATTCTTTATGATTTGGCAGATGTTTTCTACTACTATCTTAAGCCTGA
CGCGTTTCCC
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Synonyms
Publications