jgi.p|Nanoce1779_2|576053, mRNA_57 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|576053
Unique NamemRNA_57
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1076
Alignment locationscaffold_3:158743..159818 +

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Properties
Property NameValue
TranscriptId576139
TrackFilteredModels2
ProteinId576053
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:158743..159818 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576053gene_57Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576053mRNA_57-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_57CDS_57Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_57 ID=mRNA_57|Name=jgi.p|Nanoce1779_2|576053|organism=Nannochloropsis oceanica|type=mRNA|length=1076bp
GCCTCGACGCCTCCTGCTCCTCCTAATTCTTTTCCCATACTCTTGACACC
TGTTCTTGCTGCTGCTGCTGCTGCTGTTGGTTTTATAACTGTTGCGGACG
GCGAGATTTCCAACGACGGAGGAAGCCACAATCGTCGAGCAAGTCCTCGA
GAAATCGCATCGATTGCGCTGATTAATGGTTGTGTGGCCTTCAGGGGTGA
TAAAGACAGGCGGGACTGCCAGAAACGCAAGGTGACTGTGGGGAATTTGA
AGGCTGCATAGGGAGGGAGAGAGGAAGGCTCAGAGGAAGTGGAGGACGAC
GGAGGTGCCTCGGCCCGGGGATCGCCTTTGGGGCAGACGATTGTTTCCAT
GGCCATATGATCTACGAGATATACATGGTCATCGATGCGGAAGAAGAGTG
CTGGCACGACAGTATCGTCGTCCTCTTCCTTCTCGACTTTGGTGTCCTCC
TCTTCCAGGCCTTCGTCGCCTTCCCTATCCTTCCAGCCATTGCTACCATC
CCCACTGCCGGTGGTATTGGAGGAAGACACGGAAGAAGAGGAAGATGGGT
CGGGAGGCTGCAGCAGACAGCTGCTCTCATCGTCGGCTGGTGCGGGTGTT
CGTTGTTCTCGCTCCTCATGCCGCCGCTCCATTCGTCGTATACGTTGCTT
CTCATGCTCCTCCCGCCGCGACTGTTGCCTTCGTCGCTGCATGTGCTGCT
GAACGATAGCACGAAAGGCCGCCGGGTTCATCTCCACCATAGCTATTTGG
AAGGACATTTGGGTGGCATCGTCTTGCGGCCTTTCGGCGGCGAAAAAGAG
GGCTTTGGGGCCCCGGTGCAGGCAGCAGGAACTGTCTTGCAAGATGACGC
GCGAGGCCAAGGTGCGTCGGCAGCGTTGTTTTTGGCGTCCTGGCGGATGC
ATCGCCGCAGACGCAGCACTGGCAGCATCCGTGGCAGGCCAATTATAGGT
GATCGGGGGCCATTGCGGCGTTAAGGGGGCGTCGTCTTTAAAGTCTTCTT
CGAGGTGGTTGTACACCTCGTTGTAAGGTATCAGCCATGTCAACCCCTGG
AGAAAGGTGTGGCGTTCCATTTCCCT
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protein sequence of jgi.p|Nanoce1779_2|576053

>mRNA_57-protein ID=mRNA_57-protein|Name=jgi.p|Nanoce1779_2|576053|organism=Nannochloropsis oceanica|type=polypeptide|length=206bp
MIYEIYMVIDAEEECWHDSIVVLFLLDFGVLLFQAFVAFPILPAIATIPT
AGGIGGRHGRRGRWVGRLQQTAALIVGWCGCSLFSLLMPPLHSSYTLLLM
LLPPRLLPSSLHVLLNDSTKGRRVHLHHSYLEGHLGGIVLRPFGGEKEGF
GAPVQAAGTVLQDDARGQGASAALFLASWRMHRRRRSTGSIRGRPIIGDR
GPLRR*
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mRNA from alignment at scaffold_3:158743..159818+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_57 ID=mRNA_57|Name=jgi.p|Nanoce1779_2|576053|organism=Nannochloropsis oceanica|type=mRNA|length=1076bp|location=Sequence derived from alignment at scaffold_3:158743..159818+ (Nannochloropsis oceanica)
GCCTCGACGCCTCCTGCTCCTCCTAATTCTTTTCCCATACTCTTGACACC
TGTTCTTGCTGCTGCTGCTGCTGCTGTTGGTTTTATAACTGTTGCGGACG
GCGAGATTTCCAACGACGGAGGAAGCCACAATCGTCGAGCAAGTCCTCGA
GAAATCGCATCGATTGCGCTGATTAATGGTTGTGTGGCCTTCAGGGGTGA
TAAAGACAGGCGGGACTGCCAGAAACGCAAGGTGACTGTGGGGAATTTGA
AGGCTGCATAGGGAGGGAGAGAGGAAGGCTCAGAGGAAGTGGAGGACGAC
GGAGGTGCCTCGGCCCGGGGATCGCCTTTGGGGCAGACGATTGTTTCCAT
GGCCATATGATCTACGAGATATACATGGTCATCGATGCGGAAGAAGAGTG
CTGGCACGACAGTATCGTCGTCCTCTTCCTTCTCGACTTTGGTGTCCTCC
TCTTCCAGGCCTTCGTCGCCTTCCCTATCCTTCCAGCCATTGCTACCATC
CCCACTGCCGGTGGTATTGGAGGAAGACACGGAAGAAGAGGAAGATGGGT
CGGGAGGCTGCAGCAGACAGCTGCTCTCATCGTCGGCTGGTGCGGGTGTT
CGTTGTTCTCGCTCCTCATGCCGCCGCTCCATTCGTCGTATACGTTGCTT
CTCATGCTCCTCCCGCCGCGACTGTTGCCTTCGTCGCTGCATGTGCTGCT
GAACGATAGCACGAAAGGCCGCCGGGTTCATCTCCACCATAGCTATTTGG
AAGGACATTTGGGTGGCATCGTCTTGCGGCCTTTCGGCGGCGAAAAAGAG
GGCTTTGGGGCCCCGGTGCAGGCAGCAGGAACTGTCTTGCAAGATGACGC
GCGAGGCCAAGGTGCGTCGGCAGCGTTGTTTTTGGCGTCCTGGCGGATGC
ATCGCCGCAGACGCAGCACTGGCAGCATCCGTGGCAGGCCAATTATAGGT
GATCGGGGGCCATTGCGGCGTTAAGGGGGCGTCGTCTTTAAAGTCTTCTT
CGAGGTGGTTGTACACCTCGTTGTAAGGTATCAGCCATGTCAACCCCTGG
AGAAAGGTGTGGCGTTCCATTTCCCT
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Coding sequence (CDS) from alignment at scaffold_3:158743..159818+

>mRNA_57 ID=mRNA_57|Name=jgi.p|Nanoce1779_2|576053|organism=Nannochloropsis oceanica|type=CDS|length=618bp|location=Sequence derived from alignment at scaffold_3:158743..159818+ (Nannochloropsis oceanica)
ATGATCTACGAGATATACATGGTCATCGATGCGGAAGAAGAGTGCTGGCA
CGACAGTATCGTCGTCCTCTTCCTTCTCGACTTTGGTGTCCTCCTCTTCC
AGGCCTTCGTCGCCTTCCCTATCCTTCCAGCCATTGCTACCATCCCCACT
GCCGGTGGTATTGGAGGAAGACACGGAAGAAGAGGAAGATGGGTCGGGAG
GCTGCAGCAGACAGCTGCTCTCATCGTCGGCTGGTGCGGGTGTTCGTTGT
TCTCGCTCCTCATGCCGCCGCTCCATTCGTCGTATACGTTGCTTCTCATG
CTCCTCCCGCCGCGACTGTTGCCTTCGTCGCTGCATGTGCTGCTGAACGA
TAGCACGAAAGGCCGCCGGGTTCATCTCCACCATAGCTATTTGGAAGGAC
ATTTGGGTGGCATCGTCTTGCGGCCTTTCGGCGGCGAAAAAGAGGGCTTT
GGGGCCCCGGTGCAGGCAGCAGGAACTGTCTTGCAAGATGACGCGCGAGG
CCAAGGTGCGTCGGCAGCGTTGTTTTTGGCGTCCTGGCGGATGCATCGCC
GCAGACGCAGCACTGGCAGCATCCGTGGCAGGCCAATTATAGGTGATCGG
GGGCCATTGCGGCGTTAA
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Synonyms
Publications