jgi.p|Nanoce1779_2|590030, mRNA_5698 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|590030
Unique NamemRNA_5698
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length815
Alignment locationscaffold_11:348959..349773 +

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Properties
Property NameValue
TranscriptId590116
TrackFilteredModels2
ProteinId590030
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:348959..349773 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590030gene_5698Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590030mRNA_5698-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5698CDS_5698Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5698 ID=mRNA_5698|Name=jgi.p|Nanoce1779_2|590030|organism=Nannochloropsis oceanica|type=mRNA|length=815bp
ACAGTTTAAACTCCCCACCTCAATCAATCATGTCTGGACGCGGCAAGGGC
GGCAAGGGCCTCGGCAAGGGCGGCGCTAAGCGCCACCGCAAGGTGTTGCG
CGACAACATCCAGGGCATTACCAAGCCCGCCATCCGCCGTTTGGCTCGTC
GAGGCGGTGTCAAGCGTATCTCGGGCCTGATCTACGAGGAGACCCGCGGT
GTGCTCAAGGTCTTCCTCGAGAACGTCATCCGTGACTCCGTTACCTACAC
CGAGCACGCCCGCCGCAAGACCGTCACGGCCCTCGACGTCGTGTACGCGC
TCAAGCGACAAGGCCGCACCCTCTACGGGTTCGGTGGCTAAACGCTTTTT
GTTGGGACGACATCTTACAACAACAAAAAACCAAAGCACCCAGGGTTTTC
ATAAAACCCCTCTCAAACATTCATCTATTTGCCGCACATGCAGCACTCTG
CAGCCCTAACTTTTTCTTCACTTGCTTTGTTATGACCTACTCGATGGGCT
GTCGCGCTCTAGGTATTCCTCTCAAGCACAAGCGCGTCACTCCCGTATCG
TCAGGAGACAGCTCTCCTTGAACACCTTAATACACAAGGTAGATGAAGAG
CTTCCCAGATGTATGAAAGATTAGAGGACGATGATGAGAGCTCGTCGCCA
GCTTTCTGATAAGTAGCATTCTGCTGCCATCATGGCGCCGTCTATCCCTT
CTCACGCGCAGGCTGCTCCTGTACCTCTTCCTTTCCTTGCCTCCCGGTCG
TCTTTCTCCTTCTCCTTCTCCTCCTTTTCCTCCTTTTTCGTCCCCCCCCT
TGACTTGACCACCTC
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protein sequence of jgi.p|Nanoce1779_2|590030

>mRNA_5698-protein ID=mRNA_5698-protein|Name=jgi.p|Nanoce1779_2|590030|organism=Nannochloropsis oceanica|type=polypeptide|length=104bp
MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGL
IYEETRGVLKVFLENVIRDSVTYTEHARRKTVTALDVVYALKRQGRTLYG
FGG*
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mRNA from alignment at scaffold_11:348959..349773+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5698 ID=mRNA_5698|Name=jgi.p|Nanoce1779_2|590030|organism=Nannochloropsis oceanica|type=mRNA|length=815bp|location=Sequence derived from alignment at scaffold_11:348959..349773+ (Nannochloropsis oceanica)
ACAGTTTAAACTCCCCACCTCAATCAATCATGTCTGGACGCGGCAAGGGC
GGCAAGGGCCTCGGCAAGGGCGGCGCTAAGCGCCACCGCAAGGTGTTGCG
CGACAACATCCAGGGCATTACCAAGCCCGCCATCCGCCGTTTGGCTCGTC
GAGGCGGTGTCAAGCGTATCTCGGGCCTGATCTACGAGGAGACCCGCGGT
GTGCTCAAGGTCTTCCTCGAGAACGTCATCCGTGACTCCGTTACCTACAC
CGAGCACGCCCGCCGCAAGACCGTCACGGCCCTCGACGTCGTGTACGCGC
TCAAGCGACAAGGCCGCACCCTCTACGGGTTCGGTGGCTAAACGCTTTTT
GTTGGGACGACATCTTACAACAACAAAAAACCAAAGCACCCAGGGTTTTC
ATAAAACCCCTCTCAAACATTCATCTATTTGCCGCACATGCAGCACTCTG
CAGCCCTAACTTTTTCTTCACTTGCTTTGTTATGACCTACTCGATGGGCT
GTCGCGCTCTAGGTATTCCTCTCAAGCACAAGCGCGTCACTCCCGTATCG
TCAGGAGACAGCTCTCCTTGAACACCTTAATACACAAGGTAGATGAAGAG
CTTCCCAGATGTATGAAAGATTAGAGGACGATGATGAGAGCTCGTCGCCA
GCTTTCTGATAAGTAGCATTCTGCTGCCATCATGGCGCCGTCTATCCCTT
CTCACGCGCAGGCTGCTCCTGTACCTCTTCCTTTCCTTGCCTCCCGGTCG
TCTTTCTCCTTCTCCTTCTCCTCCTTTTCCTCCTTTTTCGTCCCCCCCCT
TGACTTGACCACCTC
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Coding sequence (CDS) from alignment at scaffold_11:348959..349773+

>mRNA_5698 ID=mRNA_5698|Name=jgi.p|Nanoce1779_2|590030|organism=Nannochloropsis oceanica|type=CDS|length=312bp|location=Sequence derived from alignment at scaffold_11:348959..349773+ (Nannochloropsis oceanica)
ATGTCTGGACGCGGCAAGGGCGGCAAGGGCCTCGGCAAGGGCGGCGCTAA
GCGCCACCGCAAGGTGTTGCGCGACAACATCCAGGGCATTACCAAGCCCG
CCATCCGCCGTTTGGCTCGTCGAGGCGGTGTCAAGCGTATCTCGGGCCTG
ATCTACGAGGAGACCCGCGGTGTGCTCAAGGTCTTCCTCGAGAACGTCAT
CCGTGACTCCGTTACCTACACCGAGCACGCCCGCCGCAAGACCGTCACGG
CCCTCGACGTCGTGTACGCGCTCAAGCGACAAGGCCGCACCCTCTACGGG
TTCGGTGGCTAA
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Synonyms
Publications