jgi.p|Nanoce1779_2|528658, mRNA_5696 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|528658
Unique Name	mRNA_5696
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1191
Alignment location	scaffold_11:345736..346926 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	528744
Track	FilteredModels2
ProteinId	528658

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_11	supercontig	scaffold_11:345736..346926 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|528658	gene_5696	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|528658	mRNA_5696-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5696	CDS_5696	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_11:345736..346926+
coding sequence from alignment at scaffold_11:345736..346926+

mRNA sequence

>mRNA_5696 ID=mRNA_5696|Name=jgi.p|Nanoce1779_2|528658|organism=Nannochloropsis oceanica|type=mRNA|length=1191bp
ATGCGCACCTCCAGCAGTCAAGAGCACGCCCAAGCCCAACAAGTCACACC
CTCCTCCCTATCCTCCTCTTTATCCTCCACTTCCACCCCTCAAGCCCTAC
ACCCCGCCGCGAGCGCAAGCAACGTGCTTGTCAATCCTCGGTTCCATAGC
CATGCCCCTTTATGGGTGCAAGTCACATACTTCTGTGTCCTTGGCTCGCT
GTTCCTCGCGACTGTCATCGATAGTTTTACGAGCAAAAGAGTGTATCGAT
TATTGGAGCACTTGTTTGCGTGGATTGAGAGACACATGATATTGGGGCCC
GTAGTCTTCTGGTCCGCGGTGGTTGTTTTCTCGATCCTGTGTATTCCAGA
AAGTGCCTTGACGATAGGAGGGGGTTACATCTTCGCGCAGGCCCACGGGG
TGGCAGTCGGCATTGTGCTGTGTACGACGTTGATCTTGACGGGCGGGGTA
GTGGGGGGTGTGGTCTCGTTTTTGATTGCGCGGTACCTGGCGTTCGACAC
TGTACAGGGGTGGGGACGGAGGTACAGGCTACTCCGGGCGCTTGATTTAA
GCTTGGTGGAAAACGGGGCGAAAATGGTGTTCCTATTGAGGCTGTCTCCT
TTTTTGCCGACGCCGCCATTGAGCTACTTGCTGGGCACCACGAGTGTGAA
GTTGAGCGACTTCATCTTGGGGAGTGGCGGGATGCTTCCGTGGGTAGTAA
CGTGCTCGTACTTGGGGAGTGCGTTGAAGGGGGTGAACGACTTGGGGGGA
GGGAGGGGGAGAGGGAGGGCGTGGAAGTATGTGTGGTATGGGTTAGGGGC
GGTGGCCACGATAGGGATCGTGGCGGGCATTGGGGTATACACACGGAGAG
CGATGGAAGAGGTGTTGAGGGAGCAGTCGGGAGAGGGAAGGAGGGAGGAC
GAGGGGAGGGGGGAGGAGATGGAGACGGTGGTTGTGTCTCGGGGGGGGGG
GGGAGAGCTTGGAGTGGAGGAACAGGAGGAGGTGCTGGTGGTGGGGATAG
CGACCGGTGGTGGTGATGGTGGAGGAGGAGGAGGAGGAGGAAATGAAGAT
GAAGCAGGAGGAGGTGGTGAAGGAGGAGGAGGGAGGGACGAGGCCAAGGG
AATGGGGGAGGAAGGGAGGGAGGAAAGAGTAGAAGGGGCATCGCCAACGC
CATCAGCAGGGCGGCAAAGGAGGCAGGCTGCTGTGGTTTAG

protein sequence of jgi.p|Nanoce1779_2|528658

>mRNA_5696-protein ID=mRNA_5696-protein|Name=jgi.p|Nanoce1779_2|528658|organism=Nannochloropsis oceanica|type=polypeptide|length=397bp
MRTSSSQEHAQAQQVTPSSLSSSLSSTSTPQALHPAASASNVLVNPRFHS
HAPLWVQVTYFCVLGSLFLATVIDSFTSKRVYRLLEHLFAWIERHMILGP
VVFWSAVVVFSILCIPESALTIGGGYIFAQAHGVAVGIVLCTTLILTGGV
VGGVVSFLIARYLAFDTVQGWGRRYRLLRALDLSLVENGAKMVFLLRLSP
FLPTPPLSYLLGTTSVKLSDFILGSGGMLPWVVTCSYLGSALKGVNDLGG
GRGRGRAWKYVWYGLGAVATIGIVAGIGVYTRRAMEEVLREQSGEGRRED
EGRGEEMETVVVSRGGGGELGVEEQEEVLVVGIATGGGDGGGGGGGGNED
EAGGGGEGGGGRDEAKGMGEEGREERVEGASPTPSAGRQRRQAAVV*

mRNA from alignment at scaffold_11:345736..346926+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5696 ID=mRNA_5696|Name=jgi.p|Nanoce1779_2|528658|organism=Nannochloropsis oceanica|type=mRNA|length=1191bp|location=Sequence derived from alignment at scaffold_11:345736..346926+ (Nannochloropsis oceanica)
ATGCGCACCTCCAGCAGTCAAGAGCACGCCCAAGCCCAACAAGTCACACC
CTCCTCCCTATCCTCCTCTTTATCCTCCACTTCCACCCCTCAAGCCCTAC
ACCCCGCCGCGAGCGCAAGCAACGTGCTTGTCAATCCTCGGTTCCATAGC
CATGCCCCTTTATGGGTGCAAGTCACATACTTCTGTGTCCTTGGCTCGCT
GTTCCTCGCGACTGTCATCGATAGTTTTACGAGCAAAAGAGTGTATCGAT
TATTGGAGCACTTGTTTGCGTGGATTGAGAGACACATGATATTGGGGCCC
GTAGTCTTCTGGTCCGCGGTGGTTGTTTTCTCGATCCTGTGTATTCCAGA
AAGTGCCTTGACGATAGGAGGGGGTTACATCTTCGCGCAGGCCCACGGGG
TGGCAGTCGGCATTGTGCTGTGTACGACGTTGATCTTGACGGGCGGGGTA
GTGGGGGGTGTGGTCTCGTTTTTGATTGCGCGGTACCTGGCGTTCGACAC
TGTACAGGGGTGGGGACGGAGGTACAGGCTACTCCGGGCGCTTGATTTAA
GCTTGGTGGAAAACGGGGCGAAAATGGTGTTCCTATTGAGGCTGTCTCCT
TTTTTGCCGACGCCGCCATTGAGCTACTTGCTGGGCACCACGAGTGTGAA
GTTGAGCGACTTCATCTTGGGGAGTGGCGGGATGCTTCCGTGGGTAGTAA
CGTGCTCGTACTTGGGGAGTGCGTTGAAGGGGGTGAACGACTTGGGGGGA
GGGAGGGGGAGAGGGAGGGCGTGGAAGTATGTGTGGTATGGGTTAGGGGC
GGTGGCCACGATAGGGATCGTGGCGGGCATTGGGGTATACACACGGAGAG
CGATGGAAGAGGTGTTGAGGGAGCAGTCGGGAGAGGGAAGGAGGGAGGAC
GAGGGGAGGGGGGAGGAGATGGAGACGGTGGTTGTGTCTCGGGGGGGGGG
GGGAGAGCTTGGAGTGGAGGAACAGGAGGAGGTGCTGGTGGTGGGGATAG
CGACCGGTGGTGGTGATGGTGGAGGAGGAGGAGGAGGAGGAAATGAAGAT
GAAGCAGGAGGAGGTGGTGAAGGAGGAGGAGGGAGGGACGAGGCCAAGGG
AATGGGGGAGGAAGGGAGGGAGGAAAGAGTAGAAGGGGCATCGCCAACGC
CATCAGCAGGGCGGCAAAGGAGGCAGGCTGCTGTGGTTTAG

Coding sequence (CDS) from alignment at scaffold_11:345736..346926+

>mRNA_5696 ID=mRNA_5696|Name=jgi.p|Nanoce1779_2|528658|organism=Nannochloropsis oceanica|type=CDS|length=1191bp|location=Sequence derived from alignment at scaffold_11:345736..346926+ (Nannochloropsis oceanica)
ATGCGCACCTCCAGCAGTCAAGAGCACGCCCAAGCCCAACAAGTCACACC
CTCCTCCCTATCCTCCTCTTTATCCTCCACTTCCACCCCTCAAGCCCTAC
ACCCCGCCGCGAGCGCAAGCAACGTGCTTGTCAATCCTCGGTTCCATAGC
CATGCCCCTTTATGGGTGCAAGTCACATACTTCTGTGTCCTTGGCTCGCT
GTTCCTCGCGACTGTCATCGATAGTTTTACGAGCAAAAGAGTGTATCGAT
TATTGGAGCACTTGTTTGCGTGGATTGAGAGACACATGATATTGGGGCCC
GTAGTCTTCTGGTCCGCGGTGGTTGTTTTCTCGATCCTGTGTATTCCAGA
AAGTGCCTTGACGATAGGAGGGGGTTACATCTTCGCGCAGGCCCACGGGG
TGGCAGTCGGCATTGTGCTGTGTACGACGTTGATCTTGACGGGCGGGGTA
GTGGGGGGTGTGGTCTCGTTTTTGATTGCGCGGTACCTGGCGTTCGACAC
TGTACAGGGGTGGGGACGGAGGTACAGGCTACTCCGGGCGCTTGATTTAA
GCTTGGTGGAAAACGGGGCGAAAATGGTGTTCCTATTGAGGCTGTCTCCT
TTTTTGCCGACGCCGCCATTGAGCTACTTGCTGGGCACCACGAGTGTGAA
GTTGAGCGACTTCATCTTGGGGAGTGGCGGGATGCTTCCGTGGGTAGTAA
CGTGCTCGTACTTGGGGAGTGCGTTGAAGGGGGTGAACGACTTGGGGGGA
GGGAGGGGGAGAGGGAGGGCGTGGAAGTATGTGTGGTATGGGTTAGGGGC
GGTGGCCACGATAGGGATCGTGGCGGGCATTGGGGTATACACACGGAGAG
CGATGGAAGAGGTGTTGAGGGAGCAGTCGGGAGAGGGAAGGAGGGAGGAC
GAGGGGAGGGGGGAGGAGATGGAGACGGTGGTTGTGTCTCGGGGGGGGGG
GGGAGAGCTTGGAGTGGAGGAACAGGAGGAGGTGCTGGTGGTGGGGATAG
CGACCGGTGGTGGTGATGGTGGAGGAGGAGGAGGAGGAGGAAATGAAGAT
GAAGCAGGAGGAGGTGGTGAAGGAGGAGGAGGGAGGGACGAGGCCAAGGG
AATGGGGGAGGAAGGGAGGGAGGAAAGAGTAGAAGGGGCATCGCCAACGC
CATCAGCAGGGCGGCAAAGGAGGCAGGCTGCTGTGGTTTAG

Synonyms

Publications