jgi.p|Nanoce1779_2|590020, mRNA_5695 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|590020
Unique NamemRNA_5695
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length773
Alignment locationscaffold_11:343992..344764 -

Link to JBrowse

Properties
Property NameValue
TranscriptId590106
TrackFilteredModels2
ProteinId590020
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:343992..344764 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590020gene_5695Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590020mRNA_5695-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5695CDS_5695Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5695 ID=mRNA_5695|Name=jgi.p|Nanoce1779_2|590020|organism=Nannochloropsis oceanica|type=mRNA|length=773bp
ACAGGCACTCTCCTGCAGTCTTCCGTTCGATCTGCACCGTCCTCTCCCCT
CTGGGGGCCTCGTCCCCACACTCACTATTATCATCCAGCACACGCAAATA
CCTCCTCACCCCTCTTTGCCGGTCCCTACAACCACCTGACCCTTTATCGA
GTGAGCATGGCCTGGCGCGGCGCCTTTCGCTCCTTCTTCACGCGGGCCCG
GACTCGCTACATGCGCGGCTCCGCCGAGTTGTTGGACGAAACCCGTTACA
ACGTTGTGGACCTGGTCAAGTTCAGTTGCACACTTTACTGCCTCCACGAC
TACGTCGCCGATGTGACGGCCTTGGCAGGCCCCTCCATGCTCCCTACCTT
TAACGAAGCTGGGGACATCGTCGTCGTGAATTGTCTGCACGTCAAGCTAA
GCAGACCCCTGGAAAAAGGTGATATAGTCATTGCCCGCTCCCCCACCAAC
CCAGGCAATACGGTCTGTAAGCGGGTCCTCGGCCTGCCAGGCGACCGCAT
TTTAATACAACCACAATTCTGGTACCAACAAGAGCAAGTCCTTGAAATTC
CTCCCGGCATGCTCTGGCTGGAGGGAGACAATCCATTCAATTCGACCGAT
TCGCGGTCATATGGTCCTGTGCCAATGGCACTGGTCAAGGGCTTGGTTGT
ATTTAAACTCTACCCTCTCTTGGAATTTGGACCCTTGCCACGGACGTATC
GGAAGCCTGGAGTGATATATCCAAAATTGGACATGGAGACGGGTATAAGC
AGATAAGAGTGCCGATAAGGGGG
back to top

protein sequence of jgi.p|Nanoce1779_2|590020

>mRNA_5695-protein ID=mRNA_5695-protein|Name=jgi.p|Nanoce1779_2|590020|organism=Nannochloropsis oceanica|type=polypeptide|length=200bp
MAWRGAFRSFFTRARTRYMRGSAELLDETRYNVVDLVKFSCTLYCLHDYV
ADVTALAGPSMLPTFNEAGDIVVVNCLHVKLSRPLEKGDIVIARSPTNPG
NTVCKRVLGLPGDRILIQPQFWYQQEQVLEIPPGMLWLEGDNPFNSTDSR
SYGPVPMALVKGLVVFKLYPLLEFGPLPRTYRKPGVIYPKLDMETGISR*
back to top

mRNA from alignment at scaffold_11:343992..344764-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5695 ID=mRNA_5695|Name=jgi.p|Nanoce1779_2|590020|organism=Nannochloropsis oceanica|type=mRNA|length=773bp|location=Sequence derived from alignment at scaffold_11:343992..344764- (Nannochloropsis oceanica)
ACAGGCACTCTCCTGCAGTCTTCCGTTCGATCTGCACCGTCCTCTCCCCT
CTGGGGGCCTCGTCCCCACACTCACTATTATCATCCAGCACACGCAAATA
CCTCCTCACCCCTCTTTGCCGGTCCCTACAACCACCTGACCCTTTATCGA
GTGAGCATGGCCTGGCGCGGCGCCTTTCGCTCCTTCTTCACGCGGGCCCG
GACTCGCTACATGCGCGGCTCCGCCGAGTTGTTGGACGAAACCCGTTACA
ACGTTGTGGACCTGGTCAAGTTCAGTTGCACACTTTACTGCCTCCACGAC
TACGTCGCCGATGTGACGGCCTTGGCAGGCCCCTCCATGCTCCCTACCTT
TAACGAAGCTGGGGACATCGTCGTCGTGAATTGTCTGCACGTCAAGCTAA
GCAGACCCCTGGAAAAAGGTGATATAGTCATTGCCCGCTCCCCCACCAAC
CCAGGCAATACGGTCTGTAAGCGGGTCCTCGGCCTGCCAGGCGACCGCAT
TTTAATACAACCACAATTCTGGTACCAACAAGAGCAAGTCCTTGAAATTC
CTCCCGGCATGCTCTGGCTGGAGGGAGACAATCCATTCAATTCGACCGAT
TCGCGGTCATATGGTCCTGTGCCAATGGCACTGGTCAAGGGCTTGGTTGT
ATTTAAACTCTACCCTCTCTTGGAATTTGGACCCTTGCCACGGACGTATC
GGAAGCCTGGAGTGATATATCCAAAATTGGACATGGAGACGGGTATAAGC
AGATAAGAGTGCCGATAAGGGGG
back to top

Coding sequence (CDS) from alignment at scaffold_11:343992..344764-

>mRNA_5695 ID=mRNA_5695|Name=jgi.p|Nanoce1779_2|590020|organism=Nannochloropsis oceanica|type=CDS|length=600bp|location=Sequence derived from alignment at scaffold_11:343992..344764- (Nannochloropsis oceanica)
ATGGCCTGGCGCGGCGCCTTTCGCTCCTTCTTCACGCGGGCCCGGACTCG
CTACATGCGCGGCTCCGCCGAGTTGTTGGACGAAACCCGTTACAACGTTG
TGGACCTGGTCAAGTTCAGTTGCACACTTTACTGCCTCCACGACTACGTC
GCCGATGTGACGGCCTTGGCAGGCCCCTCCATGCTCCCTACCTTTAACGA
AGCTGGGGACATCGTCGTCGTGAATTGTCTGCACGTCAAGCTAAGCAGAC
CCCTGGAAAAAGGTGATATAGTCATTGCCCGCTCCCCCACCAACCCAGGC
AATACGGTCTGTAAGCGGGTCCTCGGCCTGCCAGGCGACCGCATTTTAAT
ACAACCACAATTCTGGTACCAACAAGAGCAAGTCCTTGAAATTCCTCCCG
GCATGCTCTGGCTGGAGGGAGACAATCCATTCAATTCGACCGATTCGCGG
TCATATGGTCCTGTGCCAATGGCACTGGTCAAGGGCTTGGTTGTATTTAA
ACTCTACCCTCTCTTGGAATTTGGACCCTTGCCACGGACGTATCGGAAGC
CTGGAGTGATATATCCAAAATTGGACATGGAGACGGGTATAAGCAGATAA
back to top
Synonyms
Publications