jgi.p|Nanoce1779_2|590014, mRNA_5693 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|590014
Unique NamemRNA_5693
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length388
Alignment locationscaffold_11:340024..340411 +

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Properties
Property NameValue
TranscriptId590100
TrackFilteredModels2
ProteinId590014
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:340024..340411 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590014gene_5693Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590014mRNA_5693-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5693CDS_5693Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5693 ID=mRNA_5693|Name=jgi.p|Nanoce1779_2|590014|organism=Nannochloropsis oceanica|type=mRNA|length=388bp
GAAAAAGCAGGAACATAACACGCTGAGTTCAAAAGGCCTATGTGTCGCTA
TTTGCTCTGGGTCTGGGCTCTGGCTCTGTTTGCTCTGTTGCTGTCGCTAT
CGTTCCGAGAGCCAGTGAGGGGAGGTTCTTTGATTTTTGTTTTCTCTCGT
CTTGCTTTACCATACATATGTGCACGTCATGTAATGATTTCATCACCATA
ATCCACCATTATCCCCTATGTATTATTTTTAAACTAACTCGACAGGTTGC
CGGGCACGGCACATGTGCCTTCCAGTCCCTCGTCCCCGTTGTCTCGTTCG
TTTGAAGCTCCCTCGGCGAGCTTCTTCATCCCCCTCTCCTTCTTCATCTC
AACCCACCTACCTACACAGCAATCATGAGCGTCATCAC
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protein sequence of jgi.p|Nanoce1779_2|590014

>mRNA_5693-protein ID=mRNA_5693-protein|Name=jgi.p|Nanoce1779_2|590014|organism=Nannochloropsis oceanica|type=polypeptide|length=54bp
MCRYLLWVWALALFALLLSLSFREPVRGGSLIFVFSRLALPYICARHVMI
SSP*
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mRNA from alignment at scaffold_11:340024..340411+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5693 ID=mRNA_5693|Name=jgi.p|Nanoce1779_2|590014|organism=Nannochloropsis oceanica|type=mRNA|length=388bp|location=Sequence derived from alignment at scaffold_11:340024..340411+ (Nannochloropsis oceanica)
GAAAAAGCAGGAACATAACACGCTGAGTTCAAAAGGCCTATGTGTCGCTA
TTTGCTCTGGGTCTGGGCTCTGGCTCTGTTTGCTCTGTTGCTGTCGCTAT
CGTTCCGAGAGCCAGTGAGGGGAGGTTCTTTGATTTTTGTTTTCTCTCGT
CTTGCTTTACCATACATATGTGCACGTCATGTAATGATTTCATCACCATA
ATCCACCATTATCCCCTATGTATTATTTTTAAACTAACTCGACAGGTTGC
CGGGCACGGCACATGTGCCTTCCAGTCCCTCGTCCCCGTTGTCTCGTTCG
TTTGAAGCTCCCTCGGCGAGCTTCTTCATCCCCCTCTCCTTCTTCATCTC
AACCCACCTACCTACACAGCAATCATGAGCGTCATCAC
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Coding sequence (CDS) from alignment at scaffold_11:340024..340411+

>mRNA_5693 ID=mRNA_5693|Name=jgi.p|Nanoce1779_2|590014|organism=Nannochloropsis oceanica|type=CDS|length=162bp|location=Sequence derived from alignment at scaffold_11:340024..340411+ (Nannochloropsis oceanica)
ATGTGTCGCTATTTGCTCTGGGTCTGGGCTCTGGCTCTGTTTGCTCTGTT
GCTGTCGCTATCGTTCCGAGAGCCAGTGAGGGGAGGTTCTTTGATTTTTG
TTTTCTCTCGTCTTGCTTTACCATACATATGTGCACGTCATGTAATGATT
TCATCACCATAA
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Synonyms
Publications