jgi.p|Nanoce1779_2|590007, mRNA_5691 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|590007
Unique NamemRNA_5691
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1025
Alignment locationscaffold_11:335898..337292 +

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Properties
Property NameValue
TranscriptId590093
TrackFilteredModels2
ProteinId590007
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:335898..337292 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590007gene_5691Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590007mRNA_5691-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5691CDS_5691Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5691 ID=mRNA_5691|Name=jgi.p|Nanoce1779_2|590007|organism=Nannochloropsis oceanica|type=mRNA|length=1025bp
ACAGAATGGACAACGAGACAGTCGACCAAGGCAGCAAATGTAGCGGCAAC
AGCTACCGCAGTGGGAGTCGGGGCCCGCTGCCAGCAACCGAGCCTGTGCT
AGTCGCCTCCATCCGCGCCCCGACTCCTAACGCCTGTGTGCACGCCTTGC
CGTGTTCCATCCATCACGACGGCCCCGCGGCCATCAACACGTACTTCATG
CCTCGCAAAGCAGCAGTAGTAATTCCAGAGGTGAAAACCCTGAAAGAATC
TTCCCAAAAATCGACAGACGAGAACCGGGTGGATGATCAAGAGAATCAAG
AAGGCCAAGGTCATTTGTACGAGGCTCAATTTCGGGGCCGTTTTTTGAAA
GGCATCCGCACGAGCTGCCCCAAGGGCACTGTTGGCTTCGTGGTGCGAGA
GAGTGTTTTGCCTCCAGAGCTGGCCGAGAAGGCCCCGTCAGCAGCGACCA
ACAGGTATTGGTCGGTGGAATCCGAGTTCCGGCATTTGACGTTGTGGCAT
CACGATTTTCCCCCACCGCTGGACCACTGCTCACATCAAGTGGAGGAGTG
GGGCAAGCTTGCTCGGTCGGTGAGTGTGGGAATGGAGGTCGGGAAAGAGG
GTTTTATTGACGAGGGGGGGCGTGATGTGGTGAAGGGAAGGGAGAGAGAC
GAGGAGGACGGAAGCGGATAGAGAGGGATTGAATGCGATTTTAATGCTTG
ATCAGGTAGTCAACTCATTATTCACGTACCACAGATTCACGAGGACACGG
ACTAAGAGGAGAGGATGGTGAATTCTGGGGGGATACCTTCCCGGAAGCAT
GCTGAATGGAGACAGATGTGCGACTTATTAAACATTGCATGGAGGACAAA
GTGAAGTATTGTGTGTAGACATGGAACGTGCAAGGTATGGCTGTCATTTG
GTGCTGCATGCAGTACTTGTGTAAATACGACAAGTGGGATGAAAGAAGGG
AGGGAGTGAGTGAGGAGGGGGGATGGGGTTGAGCCGCGACAGCCTTGTCT
TGTCTTATTTAAAATTAAAAGTACG
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protein sequence of jgi.p|Nanoce1779_2|590007

>mRNA_5691-protein ID=mRNA_5691-protein|Name=jgi.p|Nanoce1779_2|590007|organism=Nannochloropsis oceanica|type=polypeptide|length=222bp
MDNETVDQGSKCSGNSYRSGSRGPLPATEPVLVASIRAPTPNACVHALPC
SIHHDGPAAINTYFMPRKAAVVIPEVKTLKESSQKSTDENRVDDQENQEG
QGHLYEAQFRGRFLKGIRTSCPKGTVGFVVRESVLPPELAEKAPSAATNR
YWSVESEFRHLTLWHHDFPPPLDHCSHQVEEWGKLARSVSVGMEVGKEGF
IDEGGRDVVKGRERDEEDGSG*
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mRNA from alignment at scaffold_11:335898..337292+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5691 ID=mRNA_5691|Name=jgi.p|Nanoce1779_2|590007|organism=Nannochloropsis oceanica|type=mRNA|length=1395bp|location=Sequence derived from alignment at scaffold_11:335898..337292+ (Nannochloropsis oceanica)
ACAGAATGGACAACGAGACAGTCGACCAAGGCAGCAAATGTAGCGGCAAC
AGCTACCGCAGTGGGAGTCGGGGCCCGCTGCCAGCAACCGAGCCTGTGCT
AGTCGCCTCCATCCGCGCCCCGACTCCTAACGCCTGTGTGCACGCCTTGC
CGTGTTCCATCCATCACGACGGCCCCGCGGCCATCAACACGTACTTCATG
CCTCGCAAAGCAGCAGTAGTAATTCCAGAGGTGAAAACCCTGAAAGAATC
TTCCCAAAGTAAGGAAGGGATAGGGGAAGGCGTGCAGTAGCTGTAGTGGT
AGAAAGTTCCATACCACCGTCAACCCCACAACACAGAATCGACAGACGAG
AACCGGGTGGATGATCAAGAGAATCAAGAAGGCCAAGGTCATTTGTACGA
GGCTCAATTTCGGGGCCGTTTTTTGAAAGGTATGCCGTGCCTCTCCGCTT
TCCCAACAGAATGAGCGAGGGCATGAAGGACGACGCATACCAACAAAGGG
AATTCCTGTTTGGATTCCTCAAGTTTTGAAAGAACAACTGCTCAGCAACC
TCTTTCATTCATTGCATCTCTGCAGGCATCCGCACGAGCTGCCCCAAGGG
CACTGTTGGCTTCGTGGTGCGAGAGAGTGTTTTGCCTCCAGAGCTGGCCG
AGAAGGCCCCGTCAGCAGCGACCAACAGGTGAGGGAGTGGTATGGGAGGA
GCCGGGAGAGAGACTATAGATGTTTGAATTTTGTCGCGGTATAGATATAG
ACGACTTCCTCCATTCGTTTCCCCCCGCTCTCCTTCCTCCTTATTCTCAC
CTTTCCTCTCCACCCTCCATCTAGGTATTGGTCGGTGGAATCCGAGTTCC
GGCATTTGACGTTGTGGCATCACGATTTTCCCCCACCGCTGGACCACTGC
TCACATCAAGTGGAGGAGTGGGGCAAGCTTGCTCGGTCGGTGAGTGTGGG
AATGGAGGTCGGGAAAGAGGGTTTTATTGACGAGGGGGGGCGTGATGTGG
TGAAGGGAAGGGAGAGAGACGAGGAGGACGGAAGCGGATAGAGAGGGATT
GAATGCGATTTTAATGCTTGATCAGGTAGTCAACTCATTATTCACGTACC
ACAGATTCACGAGGACACGGACTAAGAGGAGAGGATGGTGAATTCTGGGG
GGATACCTTCCCGGAAGCATGCTGAATGGAGACAGATGTGCGACTTATTA
AACATTGCATGGAGGACAAAGTGAAGTATTGTGTGTAGACATGGAACGTG
CAAGGTATGGCTGTCATTTGGTGCTGCATGCAGTACTTGTGTAAATACGA
CAAGTGGGATGAAAGAAGGGAGGGAGTGAGTGAGGAGGGGGGATGGGGTT
GAGCCGCGACAGCCTTGTCTTGTCTTATTTAAAATTAAAAGTACG
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Coding sequence (CDS) from alignment at scaffold_11:335898..337292+

>mRNA_5691 ID=mRNA_5691|Name=jgi.p|Nanoce1779_2|590007|organism=Nannochloropsis oceanica|type=CDS|length=2664bp|location=Sequence derived from alignment at scaffold_11:335898..337292+ (Nannochloropsis oceanica)
ATGGACAACGAGACAGTCGACCAAGGCAGCAAATGTAGCGGCAACAGCTA
CCGCAGTGGGAGTCGGGGCCCGCTGCCAGCAACCGAGCCTGTGCTAGTCG
CCTCCATCCGCGCCCCGACTCCTAACGCCTGTGTGCACGCCTTGCCGTGT
TCCATCCATCACGACGGCCCCGCGGCCATCAACACGTACTTCATGCCTCG
CAAAGCAGCAGTAGTAATTCCAGAGGTGAAAACCCTGAAAGAATCTTCCC
AAAAATCGACAGACGAGAACCGGGTGGATGATCAAGAGAATCAAGAAGGC
CAAGGTCATTTGTACGAGGCTCAATTTCGGGGCCGTTTTTTGAAAGGCAT
CCGCACGAGCTGCCCCAAGGGCACTGTTGGCTTCGTGGTGCGAGAGAGTG
TTTTGCCTCCAGAGCTGGCCGAGAAGGCCCCGTCAGCAGCGACCAACAGG
TATTGGTCGGTGGAATCCGAGTTCCGGCATTTGACGTTGTGGCATCACGA
TTTTCCCCCACCGCTGGACCACTGCTCACATCAAGTGGAGGAGTGGGGCA
AGCTTGCTCGGTCGGTGAGTGTGGGAATGGAGGTCGGGAAAGAGGGTTTT
ATTGACGAGGGGGGGCGTGATGTGGTGAAGGGAAGGGAGAGAGACGAGGA
GGACGGAAGCGGATAGATGGACAACGAGACAGTCGACCAAGGCAGCAAAT
GTAGCGGCAACAGCTACCGCAGTGGGAGTCGGGGCCCGCTGCCAGCAACC
GAGCCTGTGCTAGTCGCCTCCATCCGCGCCCCGACTCCTAACGCCTGTGT
GCACGCCTTGCCGTGTTCCATCCATCACGACGGCCCCGCGGCCATCAACA
CGTACTTCATGCCTCGCAAAGCAGCAGTAGTAATTCCAGAGGTGAAAACC
CTGAAAGAATCTTCCCAAAAATCGACAGACGAGAACCGGGTGGATGATCA
AGAGAATCAAGAAGGCCAAGGTCATTTGTACGAGGCTCAATTTCGGGGCC
GTTTTTTGAAAGGCATCCGCACGAGCTGCCCCAAGGGCACTGTTGGCTTC
GTGGTGCGAGAGAGTGTTTTGCCTCCAGAGCTGGCCGAGAAGGCCCCGTC
AGCAGCGACCAACAGGTATTGGTCGGTGGAATCCGAGTTCCGGCATTTGA
CGTTGTGGCATCACGATTTTCCCCCACCGCTGGACCACTGCTCACATCAA
GTGGAGGAGTGGGGCAAGCTTGCTCGGTCGGTGAGTGTGGGAATGGAGGT
CGGGAAAGAGGGTTTTATTGACGAGGGGGGGCGTGATGTGGTGAAGGGAA
GGGAGAGAGACGAGGAGGACGGAAGCGGATAGATGGACAACGAGACAGTC
GACCAAGGCAGCAAATGTAGCGGCAACAGCTACCGCAGTGGGAGTCGGGG
CCCGCTGCCAGCAACCGAGCCTGTGCTAGTCGCCTCCATCCGCGCCCCGA
CTCCTAACGCCTGTGTGCACGCCTTGCCGTGTTCCATCCATCACGACGGC
CCCGCGGCCATCAACACGTACTTCATGCCTCGCAAAGCAGCAGTAGTAAT
TCCAGAGGTGAAAACCCTGAAAGAATCTTCCCAAAAATCGACAGACGAGA
ACCGGGTGGATGATCAAGAGAATCAAGAAGGCCAAGGTCATTTGTACGAG
GCTCAATTTCGGGGCCGTTTTTTGAAAGGCATCCGCACGAGCTGCCCCAA
GGGCACTGTTGGCTTCGTGGTGCGAGAGAGTGTTTTGCCTCCAGAGCTGG
CCGAGAAGGCCCCGTCAGCAGCGACCAACAGGTATTGGTCGGTGGAATCC
GAGTTCCGGCATTTGACGTTGTGGCATCACGATTTTCCCCCACCGCTGGA
CCACTGCTCACATCAAGTGGAGGAGTGGGGCAAGCTTGCTCGGTCGGTGA
GTGTGGGAATGGAGGTCGGGAAAGAGGGTTTTATTGACGAGGGGGGGCGT
GATGTGGTGAAGGGAAGGGAGAGAGACGAGGAGGACGGAAGCGGATAGAT
GGACAACGAGACAGTCGACCAAGGCAGCAAATGTAGCGGCAACAGCTACC
GCAGTGGGAGTCGGGGCCCGCTGCCAGCAACCGAGCCTGTGCTAGTCGCC
TCCATCCGCGCCCCGACTCCTAACGCCTGTGTGCACGCCTTGCCGTGTTC
CATCCATCACGACGGCCCCGCGGCCATCAACACGTACTTCATGCCTCGCA
AAGCAGCAGTAGTAATTCCAGAGGTGAAAACCCTGAAAGAATCTTCCCAA
AAATCGACAGACGAGAACCGGGTGGATGATCAAGAGAATCAAGAAGGCCA
AGGTCATTTGTACGAGGCTCAATTTCGGGGCCGTTTTTTGAAAGGCATCC
GCACGAGCTGCCCCAAGGGCACTGTTGGCTTCGTGGTGCGAGAGAGTGTT
TTGCCTCCAGAGCTGGCCGAGAAGGCCCCGTCAGCAGCGACCAACAGGTA
TTGGTCGGTGGAATCCGAGTTCCGGCATTTGACGTTGTGGCATCACGATT
TTCCCCCACCGCTGGACCACTGCTCACATCAAGTGGAGGAGTGGGGCAAG
CTTGCTCGGTCGGTGAGTGTGGGAATGGAGGTCGGGAAAGAGGGTTTTAT
TGACGAGGGGGGGCGTGATGTGGTGAAGGGAAGGGAGAGAGACGAGGAGG
ACGGAAGCGGATAG
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Synonyms
Publications