jgi.p|Nanoce1779_2|670970, mRNA_5690 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|670970
Unique Name	mRNA_5690
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1316
Alignment location	scaffold_11:333825..335604 -

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Properties


Property Name	Value
TranscriptId	671056
Track	FilteredModels2
ProteinId	670970

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_11	supercontig	scaffold_11:333825..335604 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|670970	gene_5690	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|670970	mRNA_5690-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5690	CDS_5690	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_11:333825..335604-
coding sequence from alignment at scaffold_11:333825..335604-

mRNA sequence

>mRNA_5690 ID=mRNA_5690|Name=jgi.p|Nanoce1779_2|670970|organism=Nannochloropsis oceanica|type=mRNA|length=1316bp
ACAGCTAGCCCAACCCTACGCAACCCAAGCATGGCCGAGAACGGCGGAGG
CAACGCAATGGGAGAGGTCTACGACCCGTTTGCCCAGCCATACATCCCAC
CACCCGACCCTGCTGTCGCTGTTGCTGGGGATCATGACCAGGACGACGAG
CAGCACTCTGCTACCCACCCGTGGGGCCCGATGAACGACGCTCATTCGCC
CGCTGCAGCCGTGCCAACCTCCTACTCCCTCACTTTCCAAGGCGCCCATC
GCGAGCGTTCCAAGAGTCCGCCTCGGCCTAGCGGCGTGAGCGGCGCCACG
ATTGACCACAAAGGCAAGCGGCTTTATGTCGGACAGCTCTCGTTTGATAC
CACCGATGAGGAACTCCGCGCCATCTTCACAAAAATAGGACCTTTGCGTT
ATTGCAAGATCATGACAGACAAAGGCACCACCAACTCGCGTGGGTTTGGG
TTCGTCGGGTTTTCCACCCGCGAGGCGGCGCAAGAAGCCATCGATAGATG
GGACAATCAAGAATTTAAGGGAGGGAGGGAAAGGGGGCTGGGAAGATACC
CTCCTCCTTCTTCCGCGTCCTCTTCCGCTTATCCTCCTCTTAGTGCTCGA
GGCGCCTACGCCGCGGATATGTTCTATGCTCCTGCAGCTCGACACATCTC
CCCTCCTCCTCCTTCCTCTGCTCCTCTTACGCTTCCTGTCCCTCCTCGAG
GAGGTGATGGGTGGGAGGGGCGTGATCGAGGACGAGGAGGAAGAGAAAGA
GAGCGGGAGGTCTACGATCGCCGTGGGGGGAATAGAGGGGAAGGAGGTGG
AGGAGGGGGAGGTAGGGAAGGAAGGCGTTATGAAGAAGAGTATTACCACC
ATTTGTTGAGTGCGCGAGAAGGAGGAGGAGGTGGAGGAAGGGACGGAGGA
AGAGAGAGGGGAAGAGGACGATCTAGGTCGCGTTCTCCTCTCTCCTCCCG
ACGAGACCCCAACCCTGCAGCCGCTGCTGTCGCTGCTCTTCCTCCTCCTC
CACCGTCATCCCAGTTTGTTCGTGACCCGTACGACTACCCACCTTCCTCC
CTACCGCTGCCTCCTCATTCTTCCTATCACCACCATCCCTCCTCAACATA
TCCCCATGCTGCTGCTCCTGCCCTTTACACGGCGTTCTCCTCCTCCGCCC
TCGCTTCCGCCTCCTCCTCCTCCTACATCCTTCCACGGGACGACGATTAC
CGGGGGAGAGGGGGGCGATCTCGGTCGAGGGAGAGGGGCAGGGAGGGAGG
GAGGGAGGAATATAGAGGAACACGGGGAGGATACGTTGCCCCTCTGGTGT
ATGACGCATTTGACAA

protein sequence of jgi.p|Nanoce1779_2|670970

>mRNA_5690-protein ID=mRNA_5690-protein|Name=jgi.p|Nanoce1779_2|670970|organism=Nannochloropsis oceanica|type=polypeptide|length=428bp
MAENGGGNAMGEVYDPFAQPYIPPPDPAVAVAGDHDQDDEQHSATHPWGP
MNDAHSPAAAVPTSYSLTFQGAHRERSKSPPRPSGVSGATIDHKGKRLYV
GQLSFDTTDEELRAIFTKIGPLRYCKIMTDKGTTNSRGFGFVGFSTREAA
QEAIDRWDNQEFKGGRERGLGRYPPPSSASSSAYPPLSARGAYAADMFYA
PAARHISPPPPSSAPLTLPVPPRGGDGWEGRDRGRGGREREREVYDRRGG
NRGEGGGGGGGREGRRYEEEYYHHLLSAREGGGGGGRDGGRERGRGRSRS
RSPLSSRRDPNPAAAAVAALPPPPPSSQFVRDPYDYPPSSLPLPPHSSYH
HHPSSTYPHAAAPALYTAFSSSALASASSSSYILPRDDDYRGRGGRSRSR
ERGREGGREEYRGTRGGYVAPLVYDAFD

mRNA from alignment at scaffold_11:333825..335604-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5690 ID=mRNA_5690|Name=jgi.p|Nanoce1779_2|670970|organism=Nannochloropsis oceanica|type=mRNA|length=1780bp|location=Sequence derived from alignment at scaffold_11:333825..335604- (Nannochloropsis oceanica)
ACAGCTAGCCCAACCCTACGCAACCCAAGCATGGCCGAGAACGGCGGAGG
CAACGCAATGGGAGAGGTCTACGACCCGTTTGCCCAGCCATACATCCCAC
CACCCGACCCTGCTGTCGCTGTTGCTGGGGATCATGACCAGGACGACGAG
CAGCACTCTGCTACCCACCCGTGGGGCCCGATGAACGACGCTCATTCGCC
CGCTGCAGCCGTGCCAACCTCCTACTCCCTCACTTTCCAAGGCGCCCATC
GCGAGCGTTCCAAGAGTCCGCCTCGGCCTAGCGGCGTGAGCGGCGCCACG
ATTGACCACAAAGGCAAGCGGCTTTATGTCGGACAGCTCTCGTTTGATAC
CACCGATGAGGAACTCCGCGCCATCTTCACAAAAATAGGGTACGTCCACT
CATTCAATCTATTTGCCGTTTCTTATCGACTCACTTTCGCCTTTTACCGA
CCCGGCTTGATAACAGACCTTTGCGTTATTGCAAGATCATGACAGACAAA
GGCACCACCAACTCGCGTGGGTTTGGGTTCGTCGGGTTTTCCACCCGCGA
GGCGGCGCAAGAAGCCATCGATAGATGGGACAATCAAGAATTTAAGGGAA
GACGAATGAAGCTTCGGTTTGCGGAGCCGAAGGCCGGGGAAGGGGATGGA
GGAGGTGGTGGAGGAGGTGGAGCAGAGAGGGAGGGAGGGAGGGATAGCCG
CGGGGGAAGGGATCGGGACAGGGATCGCGAGAGGGAGAGGGAAAGGGAGA
GGGATGGAAGAGGACGGGACGGAGAGAGCTATGATCGTGAGCGTGAATAT
AGAGACAGGGATCGCGAGTGGGGGGGAGTGCGAGGAGTGAGGGAGAGGTC
AAGGGAAAACGATTTGATGGAGAGGGAGAGGGAGCGAGGGAGGGAGGTGC
GGCCGAGGTACTCTTGGGAAGAAGAAGAGTACTTCCGCACGATTGCTGAG
CGAGAGGCAAGAGAGCGGGGGGGAGGGAGGGAGGGAGGGAGGGAAAGGGG
GCTGGGAAGATACCCTCCTCCTTCTTCCGCGTCCTCTTCCGCTTATCCTC
CTCTTAGTGCTCGAGGCGCCTACGCCGCGGATATGTTCTATGCTCCTGCA
GCTCGACACATCTCCCCTCCTCCTCCTTCCTCTGCTCCTCTTACGCTTCC
TGTCCCTCCTCGAGGAGGTGATGGGTGGGAGGGGCGTGATCGAGGACGAG
GAGGAAGAGAAAGAGAGCGGGAGGTCTACGATCGCCGTGGGGGGAATAGA
GGGGAAGGAGGTGGAGGAGGGGGAGGTAGGGAAGGAAGGCGTTATGAAGA
AGAGTATTACCACCATTTGTTGAGTGCGCGAGAAGGAGGAGGAGGTGGAG
GAAGGGACGGAGGAAGAGAGAGGGGAAGAGGACGATCTAGGTCGCGTTCT
CCTCTCTCCTCCCGACGAGACCCCAACCCTGCAGCCGCTGCTGTCGCTGC
TCTTCCTCCTCCTCCACCGTCATCCCAGTTTGTTCGTGACCCGTACGACT
ACCCACCTTCCTCCCTACCGCTGCCTCCTCATTCTTCCTATCACCACCAT
CCCTCCTCAACATATCCCCATGCTGCTGCTCCTGCCCTTTACACGGCGTT
CTCCTCCTCCGCCCTCGCTTCCGCCTCCTCCTCCTCCTACATCCTTCCAC
GGGACGACGATTACCGGGGGAGAGGGGGGCGATCTCGGTCGAGGGAGAGG
GGCAGGGAGGGAGGGAGGGAGGAATATAGAGGAACACGGGGAGGATACGT
TGCCCCTCTGGTGTATGACGCATTTGACAA

Coding sequence (CDS) from alignment at scaffold_11:333825..335604-

>mRNA_5690 ID=mRNA_5690|Name=jgi.p|Nanoce1779_2|670970|organism=Nannochloropsis oceanica|type=CDS|length=3852bp|location=Sequence derived from alignment at scaffold_11:333825..335604- (Nannochloropsis oceanica)
GGAGGGAGGGAAAGGGGGCTGGGAAGATACCCTCCTCCTTCTTCCGCGTC
CTCTTCCGCTTATCCTCCTCTTAGTGCTCGAGGCGCCTACGCCGCGGATA
TGTTCTATGCTCCTGCAGCTCGACACATCTCCCCTCCTCCTCCTTCCTCT
GCTCCTCTTACGCTTCCTGTCCCTCCTCGAGGAGGTGATGGGTGGGAGGG
GCGTGATCGAGGACGAGGAGGAAGAGAAAGAGAGCGGGAGGTCTACGATC
GCCGTGGGGGGAATAGAGGGGAAGGAGGTGGAGGAGGGGGAGGTAGGGAA
GGAAGGCGTTATGAAGAAGAGTATTACCACCATTTGTTGAGTGCGCGAGA
AGGAGGAGGAGGTGGAGGAAGGGACGGAGGAAGAGAGAGGGGAAGAGGAC
GATCTAGGTCGCGTTCTCCTCTCTCCTCCCGACGAGACCCCAACCCTGCA
GCCGCTGCTGTCGCTGCTCTTCCTCCTCCTCCACCGTCATCCCAGTTTGT
TCGTGACCCGTACGACTACCCACCTTCCTCCCTACCGCTGCCTCCTCATT
CTTCCTATCACCACCATCCCTCCTCAACATATCCCCATGCTGCTGCTCCT
GCCCTTTACACGGCGTTCTCCTCCTCCGCCCTCGCTTCCGCCTCCTCCTC
CTCCTACATCCTTCCACGGGACGACGATTACCGGGGGAGAGGGGGGCGAT
CTCGGTCGAGGGAGAGGGGCAGGGAGGGAGGGAGGGAGGAATATAGAGGA
ACACGGGGAGGATACGTTGCCCCTCTGGTGTATGACGCATTTGACACCTT
TGCGTTATTGCAAGATCATGACAGACAAAGGCACCACCAACTCGCGTGGG
TTTGGGTTCGTCGGGTTTTCCACCCGCGAGGCGGCGCAAGAAGCCATCGA
TAGATGGGACAATCAAGAATTTAAGATGGCCGAGAACGGCGGAGGCAACG
CAATGGGAGAGGTCTACGACCCGTTTGCCCAGCCATACATCCCACCACCC
GACCCTGCTGTCGCTGTTGCTGGGGATCATGACCAGGACGACGAGCAGCA
CTCTGCTACCCACCCGTGGGGCCCGATGAACGACGCTCATTCGCCCGCTG
CAGCCGTGCCAACCTCCTACTCCCTCACTTTCCAAGGCGCCCATCGCGAG
CGTTCCAAGAGTCCGCCTCGGCCTAGCGGCGTGAGCGGCGCCACGATTGA
CCACAAAGGCAAGCGGCTTTATGTCGGACAGCTCTCGTTTGATACCACCG
ATGAGGAACTCCGCGCCATCTTCACAAAAATAGGGGAGGGAGGGAAAGGG
GGCTGGGAAGATACCCTCCTCCTTCTTCCGCGTCCTCTTCCGCTTATCCT
CCTCTTAGTGCTCGAGGCGCCTACGCCGCGGATATGTTCTATGCTCCTGC
AGCTCGACACATCTCCCCTCCTCCTCCTTCCTCTGCTCCTCTTACGCTTC
CTGTCCCTCCTCGAGGAGGTGATGGGTGGGAGGGGCGTGATCGAGGACGA
GGAGGAAGAGAAAGAGAGCGGGAGGTCTACGATCGCCGTGGGGGGAATAG
AGGGGAAGGAGGTGGAGGAGGGGGAGGTAGGGAAGGAAGGCGTTATGAAG
AAGAGTATTACCACCATTTGTTGAGTGCGCGAGAAGGAGGAGGAGGTGGA
GGAAGGGACGGAGGAAGAGAGAGGGGAAGAGGACGATCTAGGTCGCGTTC
TCCTCTCTCCTCCCGACGAGACCCCAACCCTGCAGCCGCTGCTGTCGCTG
CTCTTCCTCCTCCTCCACCGTCATCCCAGTTTGTTCGTGACCCGTACGAC
TACCCACCTTCCTCCCTACCGCTGCCTCCTCATTCTTCCTATCACCACCA
TCCCTCCTCAACATATCCCCATGCTGCTGCTCCTGCCCTTTACACGGCGT
TCTCCTCCTCCGCCCTCGCTTCCGCCTCCTCCTCCTCCTACATCCTTCCA
CGGGACGACGATTACCGGGGGAGAGGGGGGCGATCTCGGTCGAGGGAGAG
GGGCAGGGAGGGAGGGAGGGAGGAATATAGAGGAACACGGGGAGGATACG
TTGCCCCTCTGGTGTATGACGCATTTGACACCTTTGCGTTATTGCAAGAT
CATGACAGACAAAGGCACCACCAACTCGCGTGGGTTTGGGTTCGTCGGGT
TTTCCACCCGCGAGGCGGCGCAAGAAGCCATCGATAGATGGGACAATCAA
GAATTTAAGATGGCCGAGAACGGCGGAGGCAACGCAATGGGAGAGGTCTA
CGACCCGTTTGCCCAGCCATACATCCCACCACCCGACCCTGCTGTCGCTG
TTGCTGGGGATCATGACCAGGACGACGAGCAGCACTCTGCTACCCACCCG
TGGGGCCCGATGAACGACGCTCATTCGCCCGCTGCAGCCGTGCCAACCTC
CTACTCCCTCACTTTCCAAGGCGCCCATCGCGAGCGTTCCAAGAGTCCGC
CTCGGCCTAGCGGCGTGAGCGGCGCCACGATTGACCACAAAGGCAAGCGG
CTTTATGTCGGACAGCTCTCGTTTGATACCACCGATGAGGAACTCCGCGC
CATCTTCACAAAAATAGGGGAGGGAGGGAAAGGGGGCTGGGAAGATACCC
TCCTCCTTCTTCCGCGTCCTCTTCCGCTTATCCTCCTCTTAGTGCTCGAG
GCGCCTACGCCGCGGATATGTTCTATGCTCCTGCAGCTCGACACATCTCC
CCTCCTCCTCCTTCCTCTGCTCCTCTTACGCTTCCTGTCCCTCCTCGAGG
AGGTGATGGGTGGGAGGGGCGTGATCGAGGACGAGGAGGAAGAGAAAGAG
AGCGGGAGGTCTACGATCGCCGTGGGGGGAATAGAGGGGAAGGAGGTGGA
GGAGGGGGAGGTAGGGAAGGAAGGCGTTATGAAGAAGAGTATTACCACCA
TTTGTTGAGTGCGCGAGAAGGAGGAGGAGGTGGAGGAAGGGACGGAGGAA
GAGAGAGGGGAAGAGGACGATCTAGGTCGCGTTCTCCTCTCTCCTCCCGA
CGAGACCCCAACCCTGCAGCCGCTGCTGTCGCTGCTCTTCCTCCTCCTCC
ACCGTCATCCCAGTTTGTTCGTGACCCGTACGACTACCCACCTTCCTCCC
TACCGCTGCCTCCTCATTCTTCCTATCACCACCATCCCTCCTCAACATAT
CCCCATGCTGCTGCTCCTGCCCTTTACACGGCGTTCTCCTCCTCCGCCCT
CGCTTCCGCCTCCTCCTCCTCCTACATCCTTCCACGGGACGACGATTACC
GGGGGAGAGGGGGGCGATCTCGGTCGAGGGAGAGGGGCAGGGAGGGAGGG
AGGGAGGAATATAGAGGAACACGGGGAGGATACGTTGCCCCTCTGGTGTA
TGACGCATTTGACACCTTTGCGTTATTGCAAGATCATGACAGACAAAGGC
ACCACCAACTCGCGTGGGTTTGGGTTCGTCGGGTTTTCCACCCGCGAGGC
GGCGCAAGAAGCCATCGATAGATGGGACAATCAAGAATTTAAGATGGCCG
AGAACGGCGGAGGCAACGCAATGGGAGAGGTCTACGACCCGTTTGCCCAG
CCATACATCCCACCACCCGACCCTGCTGTCGCTGTTGCTGGGGATCATGA
CCAGGACGACGAGCAGCACTCTGCTACCCACCCGTGGGGCCCGATGAACG
ACGCTCATTCGCCCGCTGCAGCCGTGCCAACCTCCTACTCCCTCACTTTC
CAAGGCGCCCATCGCGAGCGTTCCAAGAGTCCGCCTCGGCCTAGCGGCGT
GAGCGGCGCCACGATTGACCACAAAGGCAAGCGGCTTTATGTCGGACAGC
TCTCGTTTGATACCACCGATGAGGAACTCCGCGCCATCTTCACAAAAATA
GG

Synonyms

Publications