jgi.p|Nanoce1779_2|589995, mRNA_5688 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|589995
Unique NamemRNA_5688
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1390
Alignment locationscaffold_11:326583..328240 -

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Properties
Property NameValue
TranscriptId590081
TrackFilteredModels2
ProteinId589995
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:326583..328240 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589995gene_5688Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589995mRNA_5688-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5688CDS_5688Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5688 ID=mRNA_5688|Name=jgi.p|Nanoce1779_2|589995|organism=Nannochloropsis oceanica|type=mRNA|length=1390bp
ACAGGGCTTACTATTTCATCGTGTCTTGCAGTCTAGCGGGGGCCTTTGGG
CTCGACATTGATTGTTCCGGCTTCTACGTCCCACTATCCTACTTCCTCTC
ATGGCGGCACCACGCGGCTTTGAGGACGTGACACGGCGGGATCTTACTGG
TATTGCCACACTTGGCGACCTCGGTGCCTCTTACACCGTCTACGAACGCA
ACTGGGCGTGCCCGAAATGCAAATTCGACAACTATGCGTCCAAGCAAAAA
TGTAACCGCTGTCGGGCCGCTAAACCCGAAGGCACCGAGCACATCCTTCC
TTCCTCCCTCCCTTCCTCCTCCTCTGTCCACGCCTGGCGGGAGACCGTGG
ACGTGACGTCACAACAACTGTACTACTACCACACCGAAACGGGAGAGGTC
CGTTGGGATCGCCCTCCAGAGATGGGACAGGCGCCCATGGCCTCAGGATG
GTACGGTCGAGGTGCCGCTGGAGGAAGGGCTGCCCAACAGTATCAGCAGC
AGAACGAGGAGTACCTCAAGAGGCCGGCGAGGAAACAAAAGGCGTTTATA
GAGGCAGGACGATCCGTGCTGGAGGGGGCAAATGAGTACAACATCTGGTA
CGGAAAATACACGGGGGAGCACTGGAGGCAGGGCAAGGGAAGAGACCCAG
CTGAAACTAGGTGTGTGGTCAAGACAGACGCGGGATGGACCAAGGCGGAT
AAGATTGATAGTAAATCCAAGTTCTTCTGCATCCATTTCGCCCGCGGTGG
CTGTGCACGAGGGCACGAATGCCAATACTTCCATCGGATCCCGACGGTGG
ACGATGATAAGACGGCGGGGGAGTTGCATGATTGTTTCGGGAGGGAGCGA
CACGCGGGACACAGGGACGACATGGACGGCGTGGGTTCCTTCACCCACCC
ATCACGCACGCTGTATGTGGGGGGGATTGTGAAAGCGGCGTACAAGGACC
AAAGGGAGGTAGAGGAGGTGGTAAGGACGCAGTTCGGGGAGTGGGGGGAG
GTGGAGCACGTGAATTTCGTGCCTCGGATCTCGGCGGCTTTCGTCAGGTA
AGGGAAGGAGGGAGGGAGGAAAGTCGTGTCAGCAAGCAAGAGTTACATTC
CCTCCTTCCCTCCTTCCCTCCCTCCCCTCCCTAGGTTTCGCCTTCGCAGC
AATTGCGAATTCTGCAAGGAAGCAATGAGCAATCAAGCATTACTCGGAAA
AGAAACGCTGAATGTTAAGTGGGCCTCTGACGACCCCAACCCCGTCGCGC
AAGAAGCAGTCGCTCGTTCCAACCTCGACGCGGCCATGCTGATGATGCAG
CAGCAAGGTGTGAGCTTACAACCGACTGCCTTTGATTACCCGGAGAGGTA
CATTCTGCCGGTGCCGAAAAAGGCCAGGGTTGAGGGAGGG
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protein sequence of jgi.p|Nanoce1779_2|589995

>mRNA_5688-protein ID=mRNA_5688-protein|Name=jgi.p|Nanoce1779_2|589995|organism=Nannochloropsis oceanica|type=polypeptide|length=317bp
MAAPRGFEDVTRRDLTGIATLGDLGASYTVYERNWACPKCKFDNYASKQK
CNRCRAAKPEGTEHILPSSLPSSSSVHAWRETVDVTSQQLYYYHTETGEV
RWDRPPEMGQAPMASGWYGRGAAGGRAAQQYQQQNEEYLKRPARKQKAFI
EAGRSVLEGANEYNIWYGKYTGEHWRQGKGRDPAETRCVVKTDAGWTKAD
KIDSKSKFFCIHFARGGCARGHECQYFHRIPTVDDDKTAGELHDCFGRER
HAGHRDDMDGVGSFTHPSRTLYVGGIVKAAYKDQREVEEVVRTQFGEWGE
VEHVNFVPRISAAFVR*
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mRNA from alignment at scaffold_11:326583..328240-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5688 ID=mRNA_5688|Name=jgi.p|Nanoce1779_2|589995|organism=Nannochloropsis oceanica|type=mRNA|length=1658bp|location=Sequence derived from alignment at scaffold_11:326583..328240- (Nannochloropsis oceanica)
ACAGGGCTTACTATTTCATCGTGTCTTGCAGTCTAGCGGGGGCCTTTGGG
CTCGACATTGATTGTTCCGGCTTCTACGTCCCACTATCCTACTTCCTCTC
ATGGCGGCACCACGCGGCTTTGAGGACGTGACACGGCGGGATCTTACTGG
TATTGCCACACTTGGGTATGTATCTACGTCTGCATTTGTATATTAATTGT
TTGAACGGGTCGCATGTGTCGCTGGCCGGCGTGCATTTATCCCCTTTCTT
CGCGCTTGCGCTCCACCACCCTGTACTTGCCGCCCAGCATTCCAACAAGA
ATACACCGCCCGAACGCCCTTCAATTATGTGTGCCTGCTTCGATACTGTC
ATCATTCCTTTCCTTTCCTCCCGTTCCCCCTCTGTCCATCGACTCGAGTT
TCCCATTTCCTACCCCACAACCACTCCCAACAGCGACCTCGGTGCCTCTT
ACACCGTCTACGAACGCAACTGGGCGTGCCCGAAATGCAAATTCGACAAC
TATGCGTCCAAGCAAAAATGTAACCGCTGTCGGGCCGCTAAACCCGAAGG
CACCGAGCACATCCTTCCTTCCTCCCTCCCTTCCTCCTCCTCTGTCCACG
CCTGGCGGGAGACCGTGGACGTGACGTCACAACAACTGTACTACTACCAC
ACCGAAACGGGAGAGGTCCGTTGGGATCGCCCTCCAGAGATGGGACAGGC
GCCCATGGCCTCAGGATGGTACGGTCGAGGTGCCGCTGGAGGAAGGGCTG
CCCAACAGTATCAGCAGCAGAACGAGGAGTACCTCAAGAGGCCGGCGAGG
AAACAAAAGGCGTTTATAGAGGCAGGACGATCCGTGCTGGAGGGGGCAAA
TGAGTACAACATCTGGTACGGAAAATACACGGGGGAGCACTGGAGGCAGG
GCAAGGGAAGAGACCCAGCTGAAACTAGGTGTGTGGTCAAGACAGACGCG
GGATGGACCAAGGCGGATAAGATTGATAGTAAATCCAAGTTCTTCTGCAT
CCATTTCGCCCGCGGTGGCTGTGCACGAGGGCACGAATGCCAATACTTCC
ATCGGATCCCGACGGTGGACGATGATAAGACGGCGGGGGAGTTGCATGAT
TGTTTCGGGAGGGAGCGACACGCGGGACACAGGGACGACATGGACGGCGT
GGGTTCCTTCACCCACCCATCACGCACGCTGTATGTGGGGGGGATTGTGA
AAGCGGCGTACAAGGACCAAAGGGAGGTAGAGGAGGTGGTAAGGACGCAG
TTCGGGGAGTGGGGGGAGGTGGAGCACGTGAATTTCGTGCCTCGGATCTC
GGCGGCTTTCGTCAGGTAAGGGAAGGAGGGAGGGAGGAAAGTCGTGTCAG
CAAGCAAGAGTTACATTCCCTCCTTCCCTCCTTCCCTCCCTCCCCTCCCT
AGGTTTCGCCTTCGCAGCAATTGCGAATTCTGCAAGGAAGCAATGAGCAA
TCAAGCATTACTCGGAAAAGAAACGCTGAATGTTAAGTGGGCCTCTGACG
ACCCCAACCCCGTCGCGCAAGAAGCAGTCGCTCGTTCCAACCTCGACGCG
GCCATGCTGATGATGCAGCAGCAAGGTGTGAGCTTACAACCGACTGCCTT
TGATTACCCGGAGAGGTACATTCTGCCGGTGCCGAAAAAGGCCAGGGTTG
AGGGAGGG
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Coding sequence (CDS) from alignment at scaffold_11:326583..328240-

>mRNA_5688 ID=mRNA_5688|Name=jgi.p|Nanoce1779_2|589995|organism=Nannochloropsis oceanica|type=CDS|length=1902bp|location=Sequence derived from alignment at scaffold_11:326583..328240- (Nannochloropsis oceanica)
CGACCTCGGTGCCTCTTACACCGTCTACGAACGCAACTGGGCGTGCCCGA
AATGCAAATTCGACAACTATGCGTCCAAGCAAAAATGTAACCGCTGTCGG
GCCGCTAAACCCGAAGGCACCGAGCACATCCTTCCTTCCTCCCTCCCTTC
CTCCTCCTCTGTCCACGCCTGGCGGGAGACCGTGGACGTGACGTCACAAC
AACTGTACTACTACCACACCGAAACGGGAGAGGTCCGTTGGGATCGCCCT
CCAGAGATGGGACAGGCGCCCATGGCCTCAGGATGGTACGGTCGAGGTGC
CGCTGGAGGAAGGGCTGCCCAACAGTATCAGCAGCAGAACGAGGAGTACC
TCAAGAGGCCGGCGAGGAAACAAAAGGCGTTTATAGAGGCAGGACGATCC
GTGCTGGAGGGGGCAAATGAGTACAACATCTGGTACGGAAAATACACGGG
GGAGCACTGGAGGCAGGGCAAGGGAAGAGACCCAGCTGAAACTAGGTGTG
TGGTCAAGACAGACGCGGGATGGACCAAGGCGGATAAGATTGATAGTAAA
TCCAAGTTCTTCTGCATCCATTTCGCCCGCGGTGGCTGTGCACGAGGGCA
CGAATGCCAATACTTCCATCGGATCCCGACGGTGGACGATGATAAGACGG
CGGGGGAGTTGCATGATTGTTTCGGGAGGGAGCGACACGCGGGACACAGG
GACGACATGGACGGCGTGGGTTCCTTCACCCACCCATCACGCACGCTGTA
TGTGGGGGGGATTGTGAAAGCGGCGTACAAGGACCAAAGGGAGGTAGAGG
AGGTGGTAAGGACGCAGTTCGGGGAGTGGGGGGAGGTGGAGCACGTGAAT
TTCGTGCCTCGGATCTCGGCGGCTTTCGTCAGGTAAATGGCGGCACCACG
CGGCTTTGAGGACGTGACACGGCGGGATCTTACTGGTATTGCCACACTTG
GCGACCTCGGTGCCTCTTACACCGTCTACGAACGCAACTGGGCGTGCCCG
AAATGCAAATTCGACAACTATGCGTCCAAGCAAAAATGTAACCGCTGTCG
GGCCGCTAAACCCGAAGGCACCGAGCACATCCTTCCTTCCTCCCTCCCTT
CCTCCTCCTCTGTCCACGCCTGGCGGGAGACCGTGGACGTGACGTCACAA
CAACTGTACTACTACCACACCGAAACGGGAGAGGTCCGTTGGGATCGCCC
TCCAGAGATGGGACAGGCGCCCATGGCCTCAGGATGGTACGGTCGAGGTG
CCGCTGGAGGAAGGGCTGCCCAACAGTATCAGCAGCAGAACGAGGAGTAC
CTCAAGAGGCCGGCGAGGAAACAAAAGGCGTTTATAGAGGCAGGACGATC
CGTGCTGGAGGGGGCAAATGAGTACAACATCTGGTACGGAAAATACACGG
GGGAGCACTGGAGGCAGGGCAAGGGAAGAGACCCAGCTGAAACTAGGTGT
GTGGTCAAGACAGACGCGGGATGGACCAAGGCGGATAAGATTGATAGTAA
ATCCAAGTTCTTCTGCATCCATTTCGCCCGCGGTGGCTGTGCACGAGGGC
ACGAATGCCAATACTTCCATCGGATCCCGACGGTGGACGATGATAAGACG
GCGGGGGAGTTGCATGATTGTTTCGGGAGGGAGCGACACGCGGGACACAG
GGACGACATGGACGGCGTGGGTTCCTTCACCCACCCATCACGCACGCTGT
ATGTGGGGGGGATTGTGAAAGCGGCGTACAAGGACCAAAGGGAGGTAGAG
GAGGTGGTAAGGACGCAGTTCGGGGAGTGGGGGGAGGTGGAGCACGTGAA
TTTCGTGCCTCGGATCTCGGCGGCTTTCGTCAGGTAAATGGCGGCACCAC
GCGGCTTTGAGGACGTGACACGGCGGGATCTTACTGGTATTGCCACACTT
GG
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Synonyms
Publications