jgi.p|Nanoce1779_2|589980, mRNA_5684 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|589980
Unique NamemRNA_5684
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length741
Alignment locationscaffold_11:318074..319129 -

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Properties
Property NameValue
TranscriptId590066
TrackFilteredModels2
ProteinId589980
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:318074..319129 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589980gene_5684Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589980mRNA_5684-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5684CDS_5684Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5684 ID=mRNA_5684|Name=jgi.p|Nanoce1779_2|589980|organism=Nannochloropsis oceanica|type=mRNA|length=741bp
ACAGGCGTCCCGCCATACACAATCACCATGAAGTGCATCATCGCCCTCCT
CCTTGCCGCCCCGGCCTTGGCTTTCATGCCCCCCACTCCCGCCCCCCAGC
GCGCCCAGGTGGTGATGAGCGCGTCCCGTGACTGGAAGAAGGACATTGCT
AAGGCCGCGTTTGTGGCCCTGCCTATGCTTGCCCCCCTTGTCGCCGGTGC
CAAGATCGACTACGAGGGTGTCGGCTTCCTGGGTGGCGGAGACAAGATTG
ATGTGAACAACGCCAACGTCCGTGTCTACGCGCGTTTTCCGGGCATGTAC
CCTACTGTGGCTGGGAAGATTGTCTCCCACGGCCCGTACAAGAGCGTGGC
GGACCTGTACTCGATCAGTGGACTGACGGAGGCGGAGAAGGCGGTGATGA
AGAAGTACGAGAGCAAGTTTGTGACCTTGGACCCGGCGCCTGAGTACCAG
ATTGACCGAATCAACAACGGCCTGTACCGTTAAGCCACTGTTTGTCGTCA
GAAGCAGTAGCATCCCTCATGGCAGGCGCCCCTCTCTTTACCTGTAGGAA
ATGAGGGGGTGGGTCCGGTGTGAGTGGATGCGTTTGCGGGTGCTGTGAGA
ACGATGAGAAAGGAGGGAGGGAAGAGGAGAGTCTAATGCGATAACATTAC
CAAAAGGCTTAAAAGAAGAAAGAGGGCGGGGAAAAAAATACGACAAGCTC
TGCTTAAACCTTTGGAAGGAAGCATACACGCTTTCACATCC
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protein sequence of jgi.p|Nanoce1779_2|589980

>mRNA_5684-protein ID=mRNA_5684-protein|Name=jgi.p|Nanoce1779_2|589980|organism=Nannochloropsis oceanica|type=polypeptide|length=152bp
MKCIIALLLAAPALAFMPPTPAPQRAQVVMSASRDWKKDIAKAAFVALPM
LAPLVAGAKIDYEGVGFLGGGDKIDVNNANVRVYARFPGMYPTVAGKIVS
HGPYKSVADLYSISGLTEAEKAVMKKYESKFVTLDPAPEYQIDRINNGLY
R*
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mRNA from alignment at scaffold_11:318074..319129-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5684 ID=mRNA_5684|Name=jgi.p|Nanoce1779_2|589980|organism=Nannochloropsis oceanica|type=mRNA|length=1056bp|location=Sequence derived from alignment at scaffold_11:318074..319129- (Nannochloropsis oceanica)
ACAGGCGTCCCGCCATACACAATCACCATGAAGTGCATCATCGCCCTCCT
CCTTGCCGCCCCGGCCTTGGCTTTCATGCCCCCCACTCCCGCCCCCCAGC
GCGCCCAGGTGGTGATGAGCGCGTCCCGTGACTGGAAGAAGGACATTGCT
AAGGCCGCGTTTGTGGCCCTGCCTATGCTTGCCCCCCTTGTCGCCGGTGC
CAAGATCGACTACGAGGGTACGTTTGTCAGAAAACAAGACAGCAACGGAC
AGTGGAGGATATCGACTACAAGGGTGTGGGGCAGGTGCATTTCCTTCTAT
GTCTTTTTGTTTAGCAGAGCCTCGCAGTGACTTGGGACACTGACCGTTTC
TGCCTCCTTCTTCCCTTCTTCCCTCCCATTTCTTGCAGGTGTCGGCTTCC
TGGGTGGCGGAGACAAGATTGATGTGAACAACGCCAACGTCCGTGTCTAC
GCGCGTTTTCCGGGCATGTACCCTACTGTGGCTGGGAAGATTGTCTCCCA
CGGCCCGTACAAGAGCGTGGCGGACCTGTACTCGATCAGTGGACTGACGG
AGGCGGAGAAGGCGGTGATGAAGAAGTACGAGAGCAAGTTTGTGACCTTG
GACCCGGCGCCTGAGTACCAGATTGACCGAATCAACAACGTGAGTAGCCG
GGTGGGAGGGAAGCATGGAAGGAGGGACAGAGATAGGGCACAGGAAGTGA
CGGACAAGTAGAGGTGACGTGCAGCGCGGATAAAATTAGCACTCATCTTC
TCTTCTGTTTCGCTACAAATCTCACCATTACAGGGCCTGTACCGTTAAGC
CACTGTTTGTCGTCAGAAGCAGTAGCATCCCTCATGGCAGGCGCCCCTCT
CTTTACCTGTAGGAAATGAGGGGGTGGGTCCGGTGTGAGTGGATGCGTTT
GCGGGTGCTGTGAGAACGATGAGAAAGGAGGGAGGGAAGAGGAGAGTCTA
ATGCGATAACATTACCAAAAGGCTTAAAAGAAGAAAGAGGGCGGGGAAAA
AAATACGACAAGCTCTGCTTAAACCTTTGGAAGGAAGCATACACGCTTTC
ACATCC
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Coding sequence (CDS) from alignment at scaffold_11:318074..319129-

>mRNA_5684 ID=mRNA_5684|Name=jgi.p|Nanoce1779_2|589980|organism=Nannochloropsis oceanica|type=CDS|length=1368bp|location=Sequence derived from alignment at scaffold_11:318074..319129- (Nannochloropsis oceanica)
GGCCTGTACCGTTAAGTGTCGGCTTCCTGGGTGGCGGAGACAAGATTGAT
GTGAACAACGCCAACGTCCGTGTCTACGCGCGTTTTCCGGGCATGTACCC
TACTGTGGCTGGGAAGATTGTCTCCCACGGCCCGTACAAGAGCGTGGCGG
ACCTGTACTCGATCAGTGGACTGACGGAGGCGGAGAAGGCGGTGATGAAG
AAGTACGAGAGCAAGTTTGTGACCTTGGACCCGGCGCCTGAGTACCAGAT
TGACCGAATCAACAACATGAAGTGCATCATCGCCCTCCTCCTTGCCGCCC
CGGCCTTGGCTTTCATGCCCCCCACTCCCGCCCCCCAGCGCGCCCAGGTG
GTGATGAGCGCGTCCCGTGACTGGAAGAAGGACATTGCTAAGGCCGCGTT
TGTGGCCCTGCCTATGCTTGCCCCCCTTGTCGCCGGTGCCAAGATCGACT
ACGAGGGGCCTGTACCGTTAAGTGTCGGCTTCCTGGGTGGCGGAGACAAG
ATTGATGTGAACAACGCCAACGTCCGTGTCTACGCGCGTTTTCCGGGCAT
GTACCCTACTGTGGCTGGGAAGATTGTCTCCCACGGCCCGTACAAGAGCG
TGGCGGACCTGTACTCGATCAGTGGACTGACGGAGGCGGAGAAGGCGGTG
ATGAAGAAGTACGAGAGCAAGTTTGTGACCTTGGACCCGGCGCCTGAGTA
CCAGATTGACCGAATCAACAACATGAAGTGCATCATCGCCCTCCTCCTTG
CCGCCCCGGCCTTGGCTTTCATGCCCCCCACTCCCGCCCCCCAGCGCGCC
CAGGTGGTGATGAGCGCGTCCCGTGACTGGAAGAAGGACATTGCTAAGGC
CGCGTTTGTGGCCCTGCCTATGCTTGCCCCCCTTGTCGCCGGTGCCAAGA
TCGACTACGAGGGGCCTGTACCGTTAAGTGTCGGCTTCCTGGGTGGCGGA
GACAAGATTGATGTGAACAACGCCAACGTCCGTGTCTACGCGCGTTTTCC
GGGCATGTACCCTACTGTGGCTGGGAAGATTGTCTCCCACGGCCCGTACA
AGAGCGTGGCGGACCTGTACTCGATCAGTGGACTGACGGAGGCGGAGAAG
GCGGTGATGAAGAAGTACGAGAGCAAGTTTGTGACCTTGGACCCGGCGCC
TGAGTACCAGATTGACCGAATCAACAACATGAAGTGCATCATCGCCCTCC
TCCTTGCCGCCCCGGCCTTGGCTTTCATGCCCCCCACTCCCGCCCCCCAG
CGCGCCCAGGTGGTGATGAGCGCGTCCCGTGACTGGAAGAAGGACATTGC
TAAGGCCGCGTTTGTGGCCCTGCCTATGCTTGCCCCCCTTGTCGCCGGTG
CCAAGATCGACTACGAGG
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Synonyms
Publications