jgi.p|Nanoce1779_2|625536, mRNA_5682 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|625536
Unique Name	mRNA_5682
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1450
Alignment location	scaffold_11:311972..313708 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	625622
Track	FilteredModels2
ProteinId	625536

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_11	supercontig	scaffold_11:311972..313708 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|625536	gene_5682	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|625536	mRNA_5682-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5682	CDS_5682	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_11:311972..313708+
coding sequence from alignment at scaffold_11:311972..313708+

mRNA sequence

>mRNA_5682 ID=mRNA_5682|Name=jgi.p|Nanoce1779_2|625536|organism=Nannochloropsis oceanica|type=mRNA|length=1450bp
ATGGGCACGAGGACAGAAAGCGTTACGCGGCCTCCTCCCTCCACCCAACT
GGAGTTCCCCAAATCCCTCCGGGCCTACGACGCCTACCTGCAAGCGACCC
TCAACCCCTTCCTTGAGGCTGCTAACGCCCTGGGCGGACAAGCGACAGAG
CTGGGCGGTGTGGTGAAGGAAGCCTGGGAAGCCCAACGTGATTTCCTCGT
CATGGCCACGGCCGTCAAAGCCCCTGCAAACGACACCCAAATCATTAGCA
AGCTCGCCCCCGCCCAAGCCGCCATCAAAACGGCACAGAAAATGATTCAA
CGGAATGAATTCGAAAACCATGCCAAGGCCGTGGCAGAAGGCATGCAGGC
CTTGACCTGGGTAGTGGTCCGGCCGGCTCCCTGTGACTACATAGAGAATT
TCATCGGCGCCGCTGACTTCTGGGGAAATAAAGTTCGGATCCAGCACAAG
AAGACCGCGCCTGAACATGTGACGTTTGTCGACGCCTATAAAAAGCTGGT
TGTGGAATTGATGGGCTACGTCAAGGAATGCCATCTGACAGGGGTGGGGT
GGAATCCACAAGGGGTGGATATAGACACATACACCCCCGGCTCCTCCTCT
GCTTCCTCATCCTCCTCCTCCCCCTCCTCCTCCTCAGCCTCCCCCTCCCT
CCCCCCCTCTTCGTCTACAACAGCAGCAGCAGCGACGCCAGCAGCAGTGG
TGCAGCCGGCTGGAGGGGGAAGGGCGGGTCTGTTGAGTCAGTTGGGCAAG
GGTTTGTCCATCACAAGTGGCCTTAAGAAGGTCTCCAAAGACCAACAAAC
CTGGCGCCCGGAATTCAACAAAAGCGCAGCTGCTGCTACGCCAGCACCTT
CCTCTTCCTCTTTCTCCTCCACATCCTCCACCCCGTCCTTTTCTTGCAAA
GCCGCACAGAAGAAGCCTCCTTCCTCCTCGTACGATTCTTCCCAACTCCG
CTGGAACGTCCAACACTACACCGACCCCTCCGTTCAGCCCCCCCCAATCT
CAATTGAGGACAAAAAGCAATCCGTCTACATCTACAACTGTGGTGCATGC
GTGATCGACGTAAAAGGGAAGGGAAAGAGCGTTATCATGGACGGATGCAA
GAAGACTCAGGTTGTGGTCGACGAGATGCTTTCCTCGTTAGAAGTGGTGA
ACTGCCAGGGGGTGAAGGTTCAGGTTCGACAACACGTCCCTACCGTGGCC
ATTGACAAAACTGATGGGATAATCGTGGTGCTGAGCAAGGACGGGTTGGG
CACAAGTTTCCTCACTAGCAAGAGCAGCGAGATGAATATTCAATACCCCA
AGAATGAAGAGGGGGAGCTGGTTGAGACGCCCATTCCCGAGCAGTGGCAG
CATTCGCTGGAGGGGGAGTGGCCCAAATTGAAAGTGAAGAATGAGGTGTC
GTCGTTGTACACGCACTAGAAGGAAGGAGATAGCGCGGTATGTGGGGGGT

protein sequence of jgi.p|Nanoce1779_2|625536

>mRNA_5682-protein ID=mRNA_5682-protein|Name=jgi.p|Nanoce1779_2|625536|organism=Nannochloropsis oceanica|type=polypeptide|length=473bp
MGTRTESVTRPPPSTQLEFPKSLRAYDAYLQATLNPFLEAANALGGQATE
LGGVVKEAWEAQRDFLVMATAVKAPANDTQIISKLAPAQAAIKTAQKMIQ
RNEFENHAKAVAEGMQALTWVVVRPAPCDYIENFIGAADFWGNKVRIQHK
KTAPEHVTFVDAYKKLVVELMGYVKECHLTGVGWNPQGVDIDTYTPGSSS
ASSSSSSPSSSSASPSLPPSSSTTAAAATPAAVVQPAGGGRAGLLSQLGK
GLSITSGLKKVSKDQQTWRPEFNKSAAAATPAPSSSSFSSTSSTPSFSCK
AAQKKPPSSSYDSSQLRWNVQHYTDPSVQPPPISIEDKKQSVYIYNCGAC
VIDVKGKGKSVIMDGCKKTQVVVDEMLSSLEVVNCQGVKVQVRQHVPTVA
IDKTDGIIVVLSKDGLGTSFLTSKSSEMNIQYPKNEEGELVETPIPEQWQ
HSLEGEWPKLKVKNEVSSLYTH*

mRNA from alignment at scaffold_11:311972..313708+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5682 ID=mRNA_5682|Name=jgi.p|Nanoce1779_2|625536|organism=Nannochloropsis oceanica|type=mRNA|length=1737bp|location=Sequence derived from alignment at scaffold_11:311972..313708+ (Nannochloropsis oceanica)
ATGGGCACGAGGACAGAAAGTATGTGTACCATGAGTGTGAGCGCGTGTGT
GCTGCTGGCGCATGATTTCGATGTCGCGGAATGTCCAAATCATGCCCTCC
ACTATCTTTAACCAGCCACCCTTTCATTATCAGACAGCAAAGCCAGCTTT
CTTGCCCTCCACCCTCCCTCCCCGACAAGCTCGCAGCCATGTCGGTCCAA
GACGAGCACGCCTACCTCTCCTCCTTGGTCGCCAACATCACGACTCGGCT
ACGCGTCCTCGAAGCCAGCGGCAGCAGCATTGGCAGCGCATGCGCCTCAA
ATGGAGGCGTTACGCGGCCTCCTCCCTCCACCCAACTGGAGTTCCCCAAA
TCCCTCCGGGCCTACGACGCCTACCTGCAAGCGACCCTCAACCCCTTCCT
TGAGGCTGCTAACGCCCTGGGCGGACAAGCGACAGAGCTGGGCGGTGTGG
TGAAGGAAGCCTGGGAAGCCCAACGTGATTTCCTCGTCATGGCCACGGCC
GTCAAAGCCCCTGCAAACGACACCCAAATCATTAGCAAGCTCGCCCCCGC
CCAAGCCGCCATCAAAACGGCACAGAAAATGATTCAACGGAATGAATTCG
AAAACCATGCCAAGGCCGTGGCAGAAGGCATGCAGGCCTTGACCTGGGTA
GTGGTCCGGCCGGCTCCCTGTGACTACATAGAGAATTTCATCGGCGCCGC
TGACTTCTGGGGAAATAAAGTTCGGATCCAGCACAAGAAGACCGCGCCTG
AACATGTGACGTTTGTCGACGCCTATAAAAAGCTGGTTGTGGAATTGATG
GGCTACGTCAAGGAATGCCATCTGACAGGGGTGGGGTGGAATCCACAAGG
GGTGGATATAGACACATACACCCCCGGCTCCTCCTCTGCTTCCTCATCCT
CCTCCTCCCCCTCCTCCTCCTCAGCCTCCCCCTCCCTCCCCCCCTCTTCG
TCTACAACAGCAGCAGCAGCGACGCCAGCAGCAGTGGTGCAGCCGGCTGG
AGGGGGAAGGGCGGGTCTGTTGAGTCAGTTGGGCAAGGGTTTGTCCATCA
CAAGTGGCCTTAAGAAGGTCTCCAAAGACCAACAAACCTGGCGCCCGGAA
TTCAACAAAAGCGCAGCTGCTGCTACGCCAGCACCTTCCTCTTCCTCTTT
CTCCTCCACATCCTCCACCCCGTCCTTTTCTTGCAAAGCCGCACAGAAGA
AGCCTCCTTCCTCCTCGTACGATTCTTCCCAACTCCGCTGGAACGTCCAA
CACTACACCGACCCCTCCGTTCAGCCCCCCCCAATCTCAATTGAGGACAA
AAAGCAATCCGTCTACATCTACAACTGTGGTGCATGCGTGATCGACGTAA
AAGGGAAGGGAAAGAGCGTTATCATGGACGGATGCAAGAAGACTCAGGTT
GTGGTCGACGAGATGCTTTCCTCGTTAGAAGTGGTGAACTGCCAGGGGGT
GAAGGTTCAGGTTCGACAACACGTCCCTACCGTGGCCATTGACAAAACTG
ATGGGATAATCGTGGTGCTGAGCAAGGACGGGTTGGGCACAAGTTTCCTC
ACTAGCAAGAGCAGCGAGATGAATATTCAATACCCCAAGAATGAAGAGGG
GGAGCTGGTTGAGACGCCCATTCCCGAGCAGTGGCAGCATTCGCTGGAGG
GGGAGTGGCCCAAATTGAAAGTGAAGAATGAGGTGTCGTCGTTGTACACG
CACTAGAAGGAAGGAGATAGCGCGGTATGTGGGGGGT

Coding sequence (CDS) from alignment at scaffold_11:311972..313708+

>mRNA_5682 ID=mRNA_5682|Name=jgi.p|Nanoce1779_2|625536|organism=Nannochloropsis oceanica|type=CDS|length=2838bp|location=Sequence derived from alignment at scaffold_11:311972..313708+ (Nannochloropsis oceanica)
ATGGGCACGAGGACAGAAAGCGTTACGCGGCCTCCTCCCTCCACCCAACT
GGAGTTCCCCAAATCCCTCCGGGCCTACGACGCCTACCTGCAAGCGACCC
TCAACCCCTTCCTTGAGGCTGCTAACGCCCTGGGCGGACAAGCGACAGAG
CTGGGCGGTGTGGTGAAGGAAGCCTGGGAAGCCCAACGTGATTTCCTCGT
CATGGCCACGGCCGTCAAAGCCCCTGCAAACGACACCCAAATCATTAGCA
AGCTCGCCCCCGCCCAAGCCGCCATCAAAACGGCACAGAAAATGATTCAA
CGGAATGAATTCGAAAACCATGCCAAGGCCGTGGCAGAAGGCATGCAGGC
CTTGACCTGGGTAGTGGTCCGGCCGGCTCCCTGTGACTACATAGAGAATT
TCATCGGCGCCGCTGACTTCTGGGGAAATAAAGTTCGGATCCAGCACAAG
AAGACCGCGCCTGAACATGTGACGTTTGTCGACGCCTATAAAAAGCTGGT
TGTGGAATTGATGGGCTACGTCAAGGAATGCCATCTGACAGGGGTGGGGT
GGAATCCACAAGGGGTGGATATAGACACATACACCCCCGGCTCCTCCTCT
GCTTCCTCATCCTCCTCCTCCCCCTCCTCCTCCTCAGCCTCCCCCTCCCT
CCCCCCCTCTTCGTCTACAACAGCAGCAGCAGCGACGCCAGCAGCAGTGG
TGCAGCCGGCTGGAGGGGGAAGGGCGGGTCTGTTGAGTCAGTTGGGCAAG
GGTTTGTCCATCACAAGTGGCCTTAAGAAGGTCTCCAAAGACCAACAAAC
CTGGCGCCCGGAATTCAACAAAAGCGCAGCTGCTGCTACGCCAGCACCTT
CCTCTTCCTCTTTCTCCTCCACATCCTCCACCCCGTCCTTTTCTTGCAAA
GCCGCACAGAAGAAGCCTCCTTCCTCCTCGTACGATTCTTCCCAACTCCG
CTGGAACGTCCAACACTACACCGACCCCTCCGTTCAGCCCCCCCCAATCT
CAATTGAGGACAAAAAGCAATCCGTCTACATCTACAACTGTGGTGCATGC
GTGATCGACGTAAAAGGGAAGGGAAAGAGCGTTATCATGGACGGATGCAA
GAAGACTCAGGTTGTGGTCGACGAGATGCTTTCCTCGTTAGAAGTGGTGA
ACTGCCAGGGGGTGAAGGTTCAGGTTCGACAACACGTCCCTACCGTGGCC
ATTGACAAAACTGATGGGATAATCGTGGTGCTGAGCAAGGACGGGTTGGG
CACAAGTTTCCTCACTAGCAAGAGCAGCGAGATGAATATTCAATACCCCA
AGAATGAAGAGGGGGAGCTGGTTGAGACGCCCATTCCCGAGCAGTGGCAG
CATTCGCTGGAGGGGGAGTGGCCCAAATTGAAAGTGAAGAATGAGGTGTC
GTCGTTGTACACGCACTAGATGGGCACGAGGACAGAAAGCGTTACGCGGC
CTCCTCCCTCCACCCAACTGGAGTTCCCCAAATCCCTCCGGGCCTACGAC
GCCTACCTGCAAGCGACCCTCAACCCCTTCCTTGAGGCTGCTAACGCCCT
GGGCGGACAAGCGACAGAGCTGGGCGGTGTGGTGAAGGAAGCCTGGGAAG
CCCAACGTGATTTCCTCGTCATGGCCACGGCCGTCAAAGCCCCTGCAAAC
GACACCCAAATCATTAGCAAGCTCGCCCCCGCCCAAGCCGCCATCAAAAC
GGCACAGAAAATGATTCAACGGAATGAATTCGAAAACCATGCCAAGGCCG
TGGCAGAAGGCATGCAGGCCTTGACCTGGGTAGTGGTCCGGCCGGCTCCC
TGTGACTACATAGAGAATTTCATCGGCGCCGCTGACTTCTGGGGAAATAA
AGTTCGGATCCAGCACAAGAAGACCGCGCCTGAACATGTGACGTTTGTCG
ACGCCTATAAAAAGCTGGTTGTGGAATTGATGGGCTACGTCAAGGAATGC
CATCTGACAGGGGTGGGGTGGAATCCACAAGGGGTGGATATAGACACATA
CACCCCCGGCTCCTCCTCTGCTTCCTCATCCTCCTCCTCCCCCTCCTCCT
CCTCAGCCTCCCCCTCCCTCCCCCCCTCTTCGTCTACAACAGCAGCAGCA
GCGACGCCAGCAGCAGTGGTGCAGCCGGCTGGAGGGGGAAGGGCGGGTCT
GTTGAGTCAGTTGGGCAAGGGTTTGTCCATCACAAGTGGCCTTAAGAAGG
TCTCCAAAGACCAACAAACCTGGCGCCCGGAATTCAACAAAAGCGCAGCT
GCTGCTACGCCAGCACCTTCCTCTTCCTCTTTCTCCTCCACATCCTCCAC
CCCGTCCTTTTCTTGCAAAGCCGCACAGAAGAAGCCTCCTTCCTCCTCGT
ACGATTCTTCCCAACTCCGCTGGAACGTCCAACACTACACCGACCCCTCC
GTTCAGCCCCCCCCAATCTCAATTGAGGACAAAAAGCAATCCGTCTACAT
CTACAACTGTGGTGCATGCGTGATCGACGTAAAAGGGAAGGGAAAGAGCG
TTATCATGGACGGATGCAAGAAGACTCAGGTTGTGGTCGACGAGATGCTT
TCCTCGTTAGAAGTGGTGAACTGCCAGGGGGTGAAGGTTCAGGTTCGACA
ACACGTCCCTACCGTGGCCATTGACAAAACTGATGGGATAATCGTGGTGC
TGAGCAAGGACGGGTTGGGCACAAGTTTCCTCACTAGCAAGAGCAGCGAG
ATGAATATTCAATACCCCAAGAATGAAGAGGGGGAGCTGGTTGAGACGCC
CATTCCCGAGCAGTGGCAGCATTCGCTGGAGGGGGAGTGGCCCAAATTGA
AAGTGAAGAATGAGGTGTCGTCGTTGTACACGCACTAG

Synonyms

Publications