Properties
Property Name | Value |
TranscriptId | 35073 |
Track | FilteredModels2 |
ProteinId | 34987 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_11 | supercontig | scaffold_11:297620..300198 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5677 ID=mRNA_5677|Name=jgi.p|Nanoce1779_2|34987|organism=Nannochloropsis oceanica|type=mRNA|length=2431bp TTCCAGTCTCAAAAACAGCTTTACAACGATTTCGTCCTCCTCCGAGAAAA ATATGACGAGGCCAAGACCAACATTGCTGAGGTCCTTTGGGGCTTTCTTC CCTCTACGACTTCCTGTTTCCCTTCCATCCCGCCCATGCAGGAGCCACGG CAGCACTCCTGCGATCCCTCCCTCCCCCCCTCCTTCCCTCCCTCCCTCCT GATCGAAAGCGAGCAGCAGGTGGGCCCATATGCCCTGGGTTCCAAGCTGG GCGAAGGTCAATTTGCAAAGGTGTTTTCCTGTCGAAAGAGAGGCGAGGGA GGGAGGGAAGGAGGCGAAGAGTATGCGCTGAAGGTGATCAATAAGGAGAA GGTGGCGAGCATAGCGGCGTTGAGGAGGGTGGATGGTGAGATTGGGGCGC AGCGAACCCTGCGGCATAAGGGCATCTTAAAGGTGAAGGATGTCATCAAT GGCCGCTTTGGACTCTATGTGGTGATGGAGAAGGGAGGGAAGGACCTGTT CGACTACTTCGACGAACGAGGCGATGCTCGGCTCCCTGCACAGGACACAG TGACCCTCGCCCGCGCCGTCTTAGACGCGATCCATTTCTGTCATTCCAGG GGCATTTGCCACCGGGACTTAAAACCTGAAAATATTTTGTTGAACACCCG AGGGCGCGCAGCAAGGGAGGGAAGGAAAGAGGAAAGTGACCTACTGGAGG AGAAGAAGAAGGAGGAGGAGGAAGAAGAGGAGGAGGAGGAGGAGGAGGGG GAGTCGCTGTTTCAGGTGAAATTGTGTGATTTTGGTTTGTGTTCCTCCTT CTCTCCCGGTCAGCCGTTACACGAATTCTGCGGGTCGCCCGGATTTTTTG CTCCGGAGATGATCACGCATGTCTTGAGTGATGGGGAGGGAGGGAAGATA GAGGGAGGGAGAGGATACGATGGGCCGAAAGTTGATTTGTGGTCGATTGG TTGCATTTTGCTGGAGCTGTCCGTAGGCCATGAGGTCTTCTGTGAGGAAT GGATGGTAGCGTATGATTATGAGCTGCTGCAGGAGCCGCGAGAGTTTGAG AGGAGGATAGAGGGGTGCTTGGAGGGGATGGGGAAGACAATGAGGGAGAA GCTGGGTTTGGAAGAGGATTTGGTTGACTTTATTCAGGGACTGCTGCAGC TTGACCCGAGGAGGAGGAGGGGTGTGGAAGAGTGTGCAAGCCATCCGTGG GTGGCTTTGGGGAATGGAAAGAGTTTTTTGACGGGTGAGCTGAAGGAGGA GGAATGGGAGGGAAGGGGGGGGGGAAGAAGGAAAGGAGAGGTGATTGGTA AGAGATGTAGCAGCGGTAAGATGACAAGTGGAAGTCCATTGCCGGAGGTG TTGCAGCAACAGCAACAGAAGCAGCAGCAGCAGCAGCAACAACAACAACA GCAAAAGAGAAAACCGAGACCGGCGTGCTTTGCGAGGCTTGGGCGGGAGG TTGAGGGAGAAGAAGAAGGAAGCAGCAGAGAGGAGCTGACGGAGGTTGAG GAGCGAGAAGAACAGGAAGAGGGTGCGAGGGAGAAGGCGATGGGAGCGGG GATAGAGGGTATTCACCATATGGCAGCTGCTGTCGCCACCTCTGCTGCAG TCATTGCCCGCCCTGTTCCTCTCCTCCTCCCCTCCTCCTCCCGCGCCCTC TCCCCCATTCCCGAACAAAACCACCGCACCAGCCCTCACTTCTCCTCTCC TAGCGCTCTCTTGTCTTCTTCTTTTTCTCCTCCTCCTCCGCCTCCTCCAC CTCCGTTTCCTCTACAAGCTGTCCGCAAATCGCTCGGTAGAAACGTCAGC CACAAAGTTCGTCAAAAATTATCAGAACAACAGAGGAAAATTCACCTACC CCCCCTCGAGCCAGTGACGCCCGCATTGACCAATGCTACGCAACGCCTGT GGGAGAGCGAGGAGGCAGCTGCTGCTTTTTTGGTGTCACCGCAAGGTCAG CAGCAGCATGAAGGGAGGAAAGATAAGGCATCGGGTTGCGGGCACGGACA TCTACCACCTGTTGAGAGGACAAGCAGTGGCTGCATAAGTGGAAGCAGCA GTAGCAACAGTAGTAGTACCAGCAGCAGCAGCAACACTAAGAGCATGTCA TATCTCCCCTTGCTGCCTGGGGTAGAGCACCTACAAAGTAAAGCCGTGTC AGAAACAGCGGCAGGAGCAGGGGCGGGAGGAGAAGGAGGGAGGAAGGAGG GGGAAATGGTAGCGAATTCCTCCTCTTCCTCAGCCTTGTCTTCGGCTTCG TTCGCGGGGCCATCGCCTTGGTAAATAAGAGAAGAGATATAGAAAGCGAA AGCGGGGGGGAGAAAGGGAGGGAGGGAGGAAGGGAGGGCTGGATGGCTGG CTTAGTGGATGGTTGGATGGATGGAAGGAAAGAGAGTCCGGAGGAGACTT TTTTATAGATTGGATAGTCGTTTCGGGTGAT back to topprotein sequence of jgi.p|Nanoce1779_2|34987 >mRNA_5677-protein ID=mRNA_5677-protein|Name=jgi.p|Nanoce1779_2|34987|organism=Nannochloropsis oceanica|type=polypeptide|length=713bp MQEPRQHSCDPSLPPSFPPSLLIESEQQVGPYALGSKLGEGQFAKVFSCR KRGEGGREGGEEYALKVINKEKVASIAALRRVDGEIGAQRTLRHKGILKV KDVINGRFGLYVVMEKGGKDLFDYFDERGDARLPAQDTVTLARAVLDAIH FCHSRGICHRDLKPENILLNTRGRAAREGRKEESDLLEEKKKEEEEEEEE EEEEGESLFQVKLCDFGLCSSFSPGQPLHEFCGSPGFFAPEMITHVLSDG EGGKIEGGRGYDGPKVDLWSIGCILLELSVGHEVFCEEWMVAYDYELLQE PREFERRIEGCLEGMGKTMREKLGLEEDLVDFIQGLLQLDPRRRRGVEEC ASHPWVALGNGKSFLTGELKEEEWEGRGGGRRKGEVIGKRCSSGKMTSGS PLPEVLQQQQQKQQQQQQQQQQQKRKPRPACFARLGREVEGEEEGSSREE LTEVEEREEQEEGAREKAMGAGIEGIHHMAAAVATSAAVIARPVPLLLPS SSRALSPIPEQNHRTSPHFSSPSALLSSSFSPPPPPPPPPFPLQAVRKSL GRNVSHKVRQKLSEQQRKIHLPPLEPVTPALTNATQRLWESEEAAAAFLV SPQGQQQHEGRKDKASGCGHGHLPPVERTSSGCISGSSSSNSSSTSSSSN TKSMSYLPLLPGVEHLQSKAVSETAAGAGAGGEGGRKEGEMVANSSSSSA LSSASFAGPSPW* back to topmRNA from alignment at scaffold_11:297620..300198+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5677 ID=mRNA_5677|Name=jgi.p|Nanoce1779_2|34987|organism=Nannochloropsis oceanica|type=mRNA|length=2579bp|location=Sequence derived from alignment at scaffold_11:297620..300198+ (Nannochloropsis oceanica) TTCCAGTCTCAAAAACAGCTTTACAACGATTTCGTCCTCCTCCGAGAAAA
ATATGACGAGGCCAAGACCAACATTGCTGAGGTCCTTTGGGGCTTTCTTC
CCTCTACGACTTCCTGTTTCCCTTCCATCCCGCCCATGCAGGAGCCACGG
CAGCACTCCTGCGATCCCTCCCTCCCCCCCTCCTTCCCTCCCTCCCTCCT
GATCGAAAGCGAGCAGCAGGTGGGCCCATATGCCCTGGGTTCCAAGCTGG
GCGAAGGTCAATTTGCAAAGGTGTTTTCCTGTCGAAAGAGAGGCGAGGGA
GGGAGGGAAGGAGGCGAAGAGTATGCGCTGAAGGTGATCAATAAGGAGAA
GGTGGCGAGCATAGCGGCGTTGAGGAGGGTGGATGGTGAGATTGGGGCGC
AGCGAACCCTGCGGCATAAGGGCATCTTAAAGGTGAAGGATGTCATCAAT
GGCCGCTTTGGACTCTATGTGGTGATGGAGAAGGGAGGGAAGGGTAAGTG
AGGAAGGGGAGGAAGAGAGAGAGGGAAAGAAGGAGGGATGGTTTGCTTTT
CTCGTATAGAGCCCCAGTGATCTTTCTACGTACTGAACCCTTCTTCTTTC
CCTCTCTTCCCCCCTCCCTCCCCTTTTCTTTCCTTTTCTAGACCTGTTCG
ACTACTTCGACGAACGAGGCGATGCTCGGCTCCCTGCACAGGACACAGTG
ACCCTCGCCCGCGCCGTCTTAGACGCGATCCATTTCTGTCATTCCAGGGG
CATTTGCCACCGGGACTTAAAACCTGAAAATATTTTGTTGAACACCCGAG
GGCGCGCAGCAAGGGAGGGAAGGAAAGAGGAAAGTGACCTACTGGAGGAG
AAGAAGAAGGAGGAGGAGGAAGAAGAGGAGGAGGAGGAGGAGGAGGGGGA
GTCGCTGTTTCAGGTGAAATTGTGTGATTTTGGTTTGTGTTCCTCCTTCT
CTCCCGGTCAGCCGTTACACGAATTCTGCGGGTCGCCCGGATTTTTTGCT
CCGGAGATGATCACGCATGTCTTGAGTGATGGGGAGGGAGGGAAGATAGA
GGGAGGGAGAGGATACGATGGGCCGAAAGTTGATTTGTGGTCGATTGGTT
GCATTTTGCTGGAGCTGTCCGTAGGCCATGAGGTCTTCTGTGAGGAATGG
ATGGTAGCGTATGATTATGAGCTGCTGCAGGAGCCGCGAGAGTTTGAGAG
GAGGATAGAGGGGTGCTTGGAGGGGATGGGGAAGACAATGAGGGAGAAGC
TGGGTTTGGAAGAGGATTTGGTTGACTTTATTCAGGGACTGCTGCAGCTT
GACCCGAGGAGGAGGAGGGGTGTGGAAGAGTGTGCAAGCCATCCGTGGGT
GGCTTTGGGGAATGGAAAGAGTTTTTTGACGGGTGAGCTGAAGGAGGAGG
AATGGGAGGGAAGGGGGGGGGGAAGAAGGAAAGGAGAGGTGATTGGTAAG
AGATGTAGCAGCGGTAAGATGACAAGTGGAAGTCCATTGCCGGAGGTGTT
GCAGCAACAGCAACAGAAGCAGCAGCAGCAGCAGCAACAACAACAACAGC
AAAAGAGAAAACCGAGACCGGCGTGCTTTGCGAGGCTTGGGCGGGAGGTT
GAGGGAGAAGAAGAAGGAAGCAGCAGAGAGGAGCTGACGGAGGTTGAGGA
GCGAGAAGAACAGGAAGAGGGTGCGAGGGAGAAGGCGATGGGAGCGGGGA
TAGAGGGTATTCACCATATGGCAGCTGCTGTCGCCACCTCTGCTGCAGTC
ATTGCCCGCCCTGTTCCTCTCCTCCTCCCCTCCTCCTCCCGCGCCCTCTC
CCCCATTCCCGAACAAAACCACCGCACCAGCCCTCACTTCTCCTCTCCTA
GCGCTCTCTTGTCTTCTTCTTTTTCTCCTCCTCCTCCGCCTCCTCCACCT
CCGTTTCCTCTACAAGCTGTCCGCAAATCGCTCGGTAGAAACGTCAGCCA
CAAAGTTCGTCAAAAATTATCAGAACAACAGAGGAAAATTCACCTACCCC
CCCTCGAGCCAGTGACGCCCGCATTGACCAATGCTACGCAACGCCTGTGG
GAGAGCGAGGAGGCAGCTGCTGCTTTTTTGGTGTCACCGCAAGGTCAGCA
GCAGCATGAAGGGAGGAAAGATAAGGCATCGGGTTGCGGGCACGGACATC
TACCACCTGTTGAGAGGACAAGCAGTGGCTGCATAAGTGGAAGCAGCAGT
AGCAACAGTAGTAGTACCAGCAGCAGCAGCAACACTAAGAGCATGTCATA
TCTCCCCTTGCTGCCTGGGGTAGAGCACCTACAAAGTAAAGCCGTGTCAG
AAACAGCGGCAGGAGCAGGGGCGGGAGGAGAAGGAGGGAGGAAGGAGGGG
GAAATGGTAGCGAATTCCTCCTCTTCCTCAGCCTTGTCTTCGGCTTCGTT
CGCGGGGCCATCGCCTTGGTAAATAAGAGAAGAGATATAGAAAGCGAAAG
CGGGGGGGAGAAAGGGAGGGAGGGAGGAAGGGAGGGCTGGATGGCTGGCT
TAGTGGATGGTTGGATGGATGGAAGGAAAGAGAGTCCGGAGGAGACTTTT
TTATAGATTGGATAGTCGTTTCGGGTGAT back to topCoding sequence (CDS) from alignment at scaffold_11:297620..300198+ >mRNA_5677 ID=mRNA_5677|Name=jgi.p|Nanoce1779_2|34987|organism=Nannochloropsis oceanica|type=CDS|length=4278bp|location=Sequence derived from alignment at scaffold_11:297620..300198+ (Nannochloropsis oceanica) ATGCAGGAGCCACGGCAGCACTCCTGCGATCCCTCCCTCCCCCCCTCCTT CCCTCCCTCCCTCCTGATCGAAAGCGAGCAGCAGGTGGGCCCATATGCCC TGGGTTCCAAGCTGGGCGAAGGTCAATTTGCAAAGGTGTTTTCCTGTCGA AAGAGAGGCGAGGGAGGGAGGGAAGGAGGCGAAGAGTATGCGCTGAAGGT GATCAATAAGGAGAAGGTGGCGAGCATAGCGGCGTTGAGGAGGGTGGATG GTGAGATTGGGGCGCAGCGAACCCTGCGGCATAAGGGCATCTTAAAGGTG AAGGATGTCATCAATGGCCGCTTTGGACTCTATGTGGTGATGGAGAAGGG AGGGAAGGACCTGTTCGACTACTTCGACGAACGAGGCGATGCTCGGCTCC CTGCACAGGACACAGTGACCCTCGCCCGCGCCGTCTTAGACGCGATCCAT TTCTGTCATTCCAGGGGCATTTGCCACCGGGACTTAAAACCTGAAAATAT TTTGTTGAACACCCGAGGGCGCGCAGCAAGGGAGGGAAGGAAAGAGGAAA GTGACCTACTGGAGGAGAAGAAGAAGGAGGAGGAGGAAGAAGAGGAGGAG GAGGAGGAGGAGGGGGAGTCGCTGTTTCAGGTGAAATTGTGTGATTTTGG TTTGTGTTCCTCCTTCTCTCCCGGTCAGCCGTTACACGAATTCTGCGGGT CGCCCGGATTTTTTGCTCCGGAGATGATCACGCATGTCTTGAGTGATGGG GAGGGAGGGAAGATAGAGGGAGGGAGAGGATACGATGGGCCGAAAGTTGA TTTGTGGTCGATTGGTTGCATTTTGCTGGAGCTGTCCGTAGGCCATGAGG TCTTCTGTGAGGAATGGATGGTAGCGTATGATTATGAGCTGCTGCAGGAG CCGCGAGAGTTTGAGAGGAGGATAGAGGGGTGCTTGGAGGGGATGGGGAA GACAATGAGGGAGAAGCTGGGTTTGGAAGAGGATTTGGTTGACTTTATTC AGGGACTGCTGCAGCTTGACCCGAGGAGGAGGAGGGGTGTGGAAGAGTGT GCAAGCCATCCGTGGGTGGCTTTGGGGAATGGAAAGAGTTTTTTGACGGG TGAGCTGAAGGAGGAGGAATGGGAGGGAAGGGGGGGGGGAAGAAGGAAAG GAGAGGTGATTGGTAAGAGATGTAGCAGCGGTAAGATGACAAGTGGAAGT CCATTGCCGGAGGTGTTGCAGCAACAGCAACAGAAGCAGCAGCAGCAGCA GCAACAACAACAACAGCAAAAGAGAAAACCGAGACCGGCGTGCTTTGCGA GGCTTGGGCGGGAGGTTGAGGGAGAAGAAGAAGGAAGCAGCAGAGAGGAG CTGACGGAGGTTGAGGAGCGAGAAGAACAGGAAGAGGGTGCGAGGGAGAA GGCGATGGGAGCGGGGATAGAGGGTATTCACCATATGGCAGCTGCTGTCG CCACCTCTGCTGCAGTCATTGCCCGCCCTGTTCCTCTCCTCCTCCCCTCC TCCTCCCGCGCCCTCTCCCCCATTCCCGAACAAAACCACCGCACCAGCCC TCACTTCTCCTCTCCTAGCGCTCTCTTGTCTTCTTCTTTTTCTCCTCCTC CTCCGCCTCCTCCACCTCCGTTTCCTCTACAAGCTGTCCGCAAATCGCTC GGTAGAAACGTCAGCCACAAAGTTCGTCAAAAATTATCAGAACAACAGAG GAAAATTCACCTACCCCCCCTCGAGCCAGTGACGCCCGCATTGACCAATG CTACGCAACGCCTGTGGGAGAGCGAGGAGGCAGCTGCTGCTTTTTTGGTG TCACCGCAAGGTCAGCAGCAGCATGAAGGGAGGAAAGATAAGGCATCGGG TTGCGGGCACGGACATCTACCACCTGTTGAGAGGACAAGCAGTGGCTGCA TAAGTGGAAGCAGCAGTAGCAACAGTAGTAGTACCAGCAGCAGCAGCAAC ACTAAGAGCATGTCATATCTCCCCTTGCTGCCTGGGGTAGAGCACCTACA AAGTAAAGCCGTGTCAGAAACAGCGGCAGGAGCAGGGGCGGGAGGAGAAG GAGGGAGGAAGGAGGGGGAAATGGTAGCGAATTCCTCCTCTTCCTCAGCC TTGTCTTCGGCTTCGTTCGCGGGGCCATCGCCTTGGTAAATGCAGGAGCC ACGGCAGCACTCCTGCGATCCCTCCCTCCCCCCCTCCTTCCCTCCCTCCC TCCTGATCGAAAGCGAGCAGCAGGTGGGCCCATATGCCCTGGGTTCCAAG CTGGGCGAAGGTCAATTTGCAAAGGTGTTTTCCTGTCGAAAGAGAGGCGA GGGAGGGAGGGAAGGAGGCGAAGAGTATGCGCTGAAGGTGATCAATAAGG AGAAGGTGGCGAGCATAGCGGCGTTGAGGAGGGTGGATGGTGAGATTGGG GCGCAGCGAACCCTGCGGCATAAGGGCATCTTAAAGGTGAAGGATGTCAT CAATGGCCGCTTTGGACTCTATGTGGTGATGGAGAAGGGAGGGAAGGACC TGTTCGACTACTTCGACGAACGAGGCGATGCTCGGCTCCCTGCACAGGAC ACAGTGACCCTCGCCCGCGCCGTCTTAGACGCGATCCATTTCTGTCATTC CAGGGGCATTTGCCACCGGGACTTAAAACCTGAAAATATTTTGTTGAACA CCCGAGGGCGCGCAGCAAGGGAGGGAAGGAAAGAGGAAAGTGACCTACTG GAGGAGAAGAAGAAGGAGGAGGAGGAAGAAGAGGAGGAGGAGGAGGAGGA GGGGGAGTCGCTGTTTCAGGTGAAATTGTGTGATTTTGGTTTGTGTTCCT CCTTCTCTCCCGGTCAGCCGTTACACGAATTCTGCGGGTCGCCCGGATTT TTTGCTCCGGAGATGATCACGCATGTCTTGAGTGATGGGGAGGGAGGGAA GATAGAGGGAGGGAGAGGATACGATGGGCCGAAAGTTGATTTGTGGTCGA TTGGTTGCATTTTGCTGGAGCTGTCCGTAGGCCATGAGGTCTTCTGTGAG GAATGGATGGTAGCGTATGATTATGAGCTGCTGCAGGAGCCGCGAGAGTT TGAGAGGAGGATAGAGGGGTGCTTGGAGGGGATGGGGAAGACAATGAGGG AGAAGCTGGGTTTGGAAGAGGATTTGGTTGACTTTATTCAGGGACTGCTG CAGCTTGACCCGAGGAGGAGGAGGGGTGTGGAAGAGTGTGCAAGCCATCC GTGGGTGGCTTTGGGGAATGGAAAGAGTTTTTTGACGGGTGAGCTGAAGG AGGAGGAATGGGAGGGAAGGGGGGGGGGAAGAAGGAAAGGAGAGGTGATT GGTAAGAGATGTAGCAGCGGTAAGATGACAAGTGGAAGTCCATTGCCGGA GGTGTTGCAGCAACAGCAACAGAAGCAGCAGCAGCAGCAGCAACAACAAC AACAGCAAAAGAGAAAACCGAGACCGGCGTGCTTTGCGAGGCTTGGGCGG GAGGTTGAGGGAGAAGAAGAAGGAAGCAGCAGAGAGGAGCTGACGGAGGT TGAGGAGCGAGAAGAACAGGAAGAGGGTGCGAGGGAGAAGGCGATGGGAG CGGGGATAGAGGGTATTCACCATATGGCAGCTGCTGTCGCCACCTCTGCT GCAGTCATTGCCCGCCCTGTTCCTCTCCTCCTCCCCTCCTCCTCCCGCGC CCTCTCCCCCATTCCCGAACAAAACCACCGCACCAGCCCTCACTTCTCCT CTCCTAGCGCTCTCTTGTCTTCTTCTTTTTCTCCTCCTCCTCCGCCTCCT CCACCTCCGTTTCCTCTACAAGCTGTCCGCAAATCGCTCGGTAGAAACGT CAGCCACAAAGTTCGTCAAAAATTATCAGAACAACAGAGGAAAATTCACC TACCCCCCCTCGAGCCAGTGACGCCCGCATTGACCAATGCTACGCAACGC CTGTGGGAGAGCGAGGAGGCAGCTGCTGCTTTTTTGGTGTCACCGCAAGG TCAGCAGCAGCATGAAGGGAGGAAAGATAAGGCATCGGGTTGCGGGCACG GACATCTACCACCTGTTGAGAGGACAAGCAGTGGCTGCATAAGTGGAAGC AGCAGTAGCAACAGTAGTAGTACCAGCAGCAGCAGCAACACTAAGAGCAT GTCATATCTCCCCTTGCTGCCTGGGGTAGAGCACCTACAAAGTAAAGCCG TGTCAGAAACAGCGGCAGGAGCAGGGGCGGGAGGAGAAGGAGGGAGGAAG GAGGGGGAAATGGTAGCGAATTCCTCCTCTTCCTCAGCCTTGTCTTCGGC TTCGTTCGCGGGGCCATCGCCTTGGTAA back to top
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