jgi.p|Nanoce1779_2|566031, mRNA_5676 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|566031
Unique NamemRNA_5676
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length330
Alignment locationscaffold_11:297002..297523 +

Link to JBrowse

Properties
Property NameValue
TranscriptId566117
TrackFilteredModels2
ProteinId566031
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:297002..297523 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|566031gene_5676Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|566031mRNA_5676-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5676CDS_5676Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5676 ID=mRNA_5676|Name=jgi.p|Nanoce1779_2|566031|organism=Nannochloropsis oceanica|type=mRNA|length=330bp
ATGGGCGGGAGGGGGGGGAGAGGAGCAGGAGGGCCACAGGGTTGGAGAAG
GGAGTTGTCGGGTGCTGAGAAACAGAGCCGGACTGATTTCGACCTGGAAA
CGGAAACGGATTGTGCCTTGGGTGGGAAAGGAGGGAGGAAGGGCGAAAAA
GAGGACAAATATGAGCAGCTGCAGGTGGAGGTGGGGACGTTGAGGGAGGA
GAATGCGATGCTTCGGTACCGCCTAGCGGAGGTGGAAGGACACCTGGGGA
AGGCGACCGAGAACGTGAGGGCGCTACAGCGGTCTCCTGAACAGCTCAAC
GATAAGAGTGGCTCTTTAACCGATGCATAA
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protein sequence of jgi.p|Nanoce1779_2|566031

>mRNA_5676-protein ID=mRNA_5676-protein|Name=jgi.p|Nanoce1779_2|566031|organism=Nannochloropsis oceanica|type=polypeptide|length=110bp
MGGRGGRGAGGPQGWRRELSGAEKQSRTDFDLETETDCALGGKGGRKGEK
EDKYEQLQVEVGTLREENAMLRYRLAEVEGHLGKATENVRALQRSPEQLN
DKSGSLTDA*
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mRNA from alignment at scaffold_11:297002..297523+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5676 ID=mRNA_5676|Name=jgi.p|Nanoce1779_2|566031|organism=Nannochloropsis oceanica|type=mRNA|length=522bp|location=Sequence derived from alignment at scaffold_11:297002..297523+ (Nannochloropsis oceanica)
ATGGGCGGGAGGGGGGGGAGAGGAGCAGGAGGGCCACAGGGTTGGAGAAG
GGAGTTGTCGGGTGCTGAGAAACAGAGCCGGACTGATTTCGACCTGGAAA
CGGAAACGGATTGTGCCTTGGGTGGGAAAGGAGGGAGGAAGGGCGAAAAA
GAGGACAAATATGAGCAGCTGCAGGTGGAGGTGGGGACGTTGAGGGAGGA
GAATGCGATGCTTCGGTACCGCCTAGCGGAGGTGGAAGGACACCTGGGGA
AGGCGACCGAGAACGTGAGGGCGCTACAGCGGGTGAGGAGCAAGGAAGAA
GGGAGGGTGGAGAAAGGGAGGAGGTTTGGAAAATGATGCATGCTTGGACA
TTTGTTTTTTGGGGTTTGATCGTGTGTCAGTGTTTGTGGGTTCTGGGTGT
ATATGTATATTTCATTCCCCCTCCCTCCCTCCCTCCCTCCTTCCCTCCCT
CCCTCTCCCTTTCCCCCCCTGCAGTCTCCTGAACAGCTCAACGATAAGAG
TGGCTCTTTAACCGATGCATAA
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Coding sequence (CDS) from alignment at scaffold_11:297002..297523+

>mRNA_5676 ID=mRNA_5676|Name=jgi.p|Nanoce1779_2|566031|organism=Nannochloropsis oceanica|type=CDS|length=660bp|location=Sequence derived from alignment at scaffold_11:297002..297523+ (Nannochloropsis oceanica)
ATGGGCGGGAGGGGGGGGAGAGGAGCAGGAGGGCCACAGGGTTGGAGAAG
GGAGTTGTCGGGTGCTGAGAAACAGAGCCGGACTGATTTCGACCTGGAAA
CGGAAACGGATTGTGCCTTGGGTGGGAAAGGAGGGAGGAAGGGCGAAAAA
GAGGACAAATATGAGCAGCTGCAGGTGGAGGTGGGGACGTTGAGGGAGGA
GAATGCGATGCTTCGGTACCGCCTAGCGGAGGTGGAAGGACACCTGGGGA
AGGCGACCGAGAACGTGAGGGCGCTACAGCGGTCTCCTGAACAGCTCAAC
GATAAGAGTGGCTCTTTAACCGATGCATAAATGGGCGGGAGGGGGGGGAG
AGGAGCAGGAGGGCCACAGGGTTGGAGAAGGGAGTTGTCGGGTGCTGAGA
AACAGAGCCGGACTGATTTCGACCTGGAAACGGAAACGGATTGTGCCTTG
GGTGGGAAAGGAGGGAGGAAGGGCGAAAAAGAGGACAAATATGAGCAGCT
GCAGGTGGAGGTGGGGACGTTGAGGGAGGAGAATGCGATGCTTCGGTACC
GCCTAGCGGAGGTGGAAGGACACCTGGGGAAGGCGACCGAGAACGTGAGG
GCGCTACAGCGGTCTCCTGAACAGCTCAACGATAAGAGTGGCTCTTTAAC
CGATGCATAA
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Synonyms
Publications