jgi.p|Nanoce1779_2|589950, mRNA_5675 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|589950
Unique NamemRNA_5675
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length632
Alignment locationscaffold_11:296231..296862 -

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Properties
Property NameValue
TranscriptId590036
TrackFilteredModels2
ProteinId589950
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:296231..296862 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589950gene_5675Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5675CDS_5675Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589950mRNA_5675-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5675 ID=mRNA_5675|Name=jgi.p|Nanoce1779_2|589950|organism=Nannochloropsis oceanica|type=mRNA|length=632bp
ATGGGGGAATCAAGAGCAGACAACGCGTTATTTATGACGCGGCAACGCAA
AACCCATTCTCCGCTACTGCTGCTGTTGCTTTTGCTGCTTGCACCACGAG
GGCGATCCAGCGCCGCATCTCCTTCCTCGTCTTCATTCTCCTCTTCCACC
TCCTCTGGTGGGATGACGGGTAGAGTAGGATTCAAGGCGACGGACAAGAG
GTTGATCAATTCTTCGCGTGGAAGGGGCCCATGGCGTAGGGGCACCAAAA
TCTCATCTCCTCCCACGCTAAATCTGATACTCGCTCTGCTGCTTCGATCG
GTGGTCGGAAGGACCGAGTCACTAGTGTTGAGATGTGTGGAGGCGACAAA
GGAGGCAATGGTGGAGGAGAAGCTTTGCCCTTGTCCCTTCCTCTCCTCTT
TTGGCACTGTCCCAGTGGTGTTCAAGGAGATAGAGGCGGCAAGAGAAGAG
ATTGTGGAGTTGAATGAAGCGTGTGTGGTGGTGGGGGAGAGTGTGGACGC
CAGTCCCAAGGAGTCGTTCTTCTCCCCGACCAGGTTAATATTACCACAAG
CGTCACTGTCGCTTCTTCCTTCATCCATAGCTGTTAGCTATGGCTCTGTG
CGTAGATCTTTTTTGTCACAATCCCGGTCCTG
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protein sequence of jgi.p|Nanoce1779_2|589950

>mRNA_5675-protein ID=mRNA_5675-protein|Name=jgi.p|Nanoce1779_2|589950|organism=Nannochloropsis oceanica|type=polypeptide|length=210bp
MGESRADNALFMTRQRKTHSPLLLLLLLLLAPRGRSSAASPSSSSFSSST
SSGGMTGRVGFKATDKRLINSSRGRGPWRRGTKISSPPTLNLILALLLRS
VVGRTESLVLRCVEATKEAMVEEKLCPCPFLSSFGTVPVVFKEIEAAREE
IVELNEACVVVGESVDASPKESFFSPTRLILPQASLSLLPSSIAVSYGSV
RRSFLSQSRS
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mRNA from alignment at scaffold_11:296231..296862-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5675 ID=mRNA_5675|Name=jgi.p|Nanoce1779_2|589950|organism=Nannochloropsis oceanica|type=mRNA|length=632bp|location=Sequence derived from alignment at scaffold_11:296231..296862- (Nannochloropsis oceanica)
ATGGGGGAATCAAGAGCAGACAACGCGTTATTTATGACGCGGCAACGCAA
AACCCATTCTCCGCTACTGCTGCTGTTGCTTTTGCTGCTTGCACCACGAG
GGCGATCCAGCGCCGCATCTCCTTCCTCGTCTTCATTCTCCTCTTCCACC
TCCTCTGGTGGGATGACGGGTAGAGTAGGATTCAAGGCGACGGACAAGAG
GTTGATCAATTCTTCGCGTGGAAGGGGCCCATGGCGTAGGGGCACCAAAA
TCTCATCTCCTCCCACGCTAAATCTGATACTCGCTCTGCTGCTTCGATCG
GTGGTCGGAAGGACCGAGTCACTAGTGTTGAGATGTGTGGAGGCGACAAA
GGAGGCAATGGTGGAGGAGAAGCTTTGCCCTTGTCCCTTCCTCTCCTCTT
TTGGCACTGTCCCAGTGGTGTTCAAGGAGATAGAGGCGGCAAGAGAAGAG
ATTGTGGAGTTGAATGAAGCGTGTGTGGTGGTGGGGGAGAGTGTGGACGC
CAGTCCCAAGGAGTCGTTCTTCTCCCCGACCAGGTTAATATTACCACAAG
CGTCACTGTCGCTTCTTCCTTCATCCATAGCTGTTAGCTATGGCTCTGTG
CGTAGATCTTTTTTGTCACAATCCCGGTCCTG
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Coding sequence (CDS) from alignment at scaffold_11:296231..296862-

>mRNA_5675 ID=mRNA_5675|Name=jgi.p|Nanoce1779_2|589950|organism=Nannochloropsis oceanica|type=CDS|length=632bp|location=Sequence derived from alignment at scaffold_11:296231..296862- (Nannochloropsis oceanica)
ATGGGGGAATCAAGAGCAGACAACGCGTTATTTATGACGCGGCAACGCAA
AACCCATTCTCCGCTACTGCTGCTGTTGCTTTTGCTGCTTGCACCACGAG
GGCGATCCAGCGCCGCATCTCCTTCCTCGTCTTCATTCTCCTCTTCCACC
TCCTCTGGTGGGATGACGGGTAGAGTAGGATTCAAGGCGACGGACAAGAG
GTTGATCAATTCTTCGCGTGGAAGGGGCCCATGGCGTAGGGGCACCAAAA
TCTCATCTCCTCCCACGCTAAATCTGATACTCGCTCTGCTGCTTCGATCG
GTGGTCGGAAGGACCGAGTCACTAGTGTTGAGATGTGTGGAGGCGACAAA
GGAGGCAATGGTGGAGGAGAAGCTTTGCCCTTGTCCCTTCCTCTCCTCTT
TTGGCACTGTCCCAGTGGTGTTCAAGGAGATAGAGGCGGCAAGAGAAGAG
ATTGTGGAGTTGAATGAAGCGTGTGTGGTGGTGGGGGAGAGTGTGGACGC
CAGTCCCAAGGAGTCGTTCTTCTCCCCGACCAGGTTAATATTACCACAAG
CGTCACTGTCGCTTCTTCCTTCATCCATAGCTGTTAGCTATGGCTCTGTG
CGTAGATCTTTTTTGTCACAATCCCGGTCCTG
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Synonyms
Publications