jgi.p|Nanoce1779_2|589943, mRNA_5673 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|589943
Unique Name	mRNA_5673
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2257
Alignment location	scaffold_11:288275..290531 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	590029
Track	FilteredModels2
ProteinId	589943

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_11	supercontig	scaffold_11:288275..290531 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|589943	gene_5673	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|589943	mRNA_5673-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5673	CDS_5673	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_11:288275..290531+
coding sequence from alignment at scaffold_11:288275..290531+

mRNA sequence

>mRNA_5673 ID=mRNA_5673|Name=jgi.p|Nanoce1779_2|589943|organism=Nannochloropsis oceanica|type=mRNA|length=2257bp
GGAAGAAGCAGCAGCAGCAGCGACAGCGGGGTGACGATGAAGAGGACGAG
GAAGAGGGAGAAGGGGAGGAGGAAGAGAGGGAGGGCGAGTATTGTTACCG
AGAGGATGCAATGGAGTTTTCTTACTGGCAAGCCCCTTCGCACGAGGAAG
AGGGGGAGGTCAATGAGCAGGAGGAAGAGGAGGCGTGTTGGGCGATCAAG
AAGATGATGATGGGCGGAACGGGGGAGGAGAAGCAGCAGCAGCAGCAGGT
AGTGGAGGGCGGGTTTGATGAGGGAGTGCAGGAGCTGCCGGAGGACGACG
AGATGGTCGTGGTCATGCCGGCAGGAGAAGAGTATCGGTCTTTCGAAAAT
GTGCCGACGGCAACGGACTACAAGCCAGCCCCTCCCTCCCTCCCTCCCTT
CTCCTCCGTCTCCTGCGTCTCGTCCCATGGGCAATCTACCCAGCTGCACC
AGCAGCATCAATCGATGATGGGCCACCAAGAGGAAAAGACGGGCAGCGCC
ACCTTCGAGAGCAGCTACAGCAGCCAGGGCAGGAGCAGCAGCCGCACGGG
CACCCACACACCCCTCCCTTGCACTTCCTTCTCCCCCTATCCGTCGTCCT
TCACTCCTGCCGCCTTCTCCGCCTACGTCCCGACGCCCGAGGAGCACCTG
GCTTGGGCGAAAATTCAATCCTACTGGAACTCCGCCGGCCCCTCCCTCCA
GCAAGCCCTAATTCTCTCCCTCCCCTCCCAGCTCCACCAAGCTTGGACCT
CCTTCTTCCTCGTCATTCCTCCCTTCCAAAGCCAGGAAGGGATGATCCAC
GCATGTCACAGTCTCTTGTCCACATCGCCTGCGCTCGCCGCGTCCGTGCA
CGAACACCGCCTGGCTCTGGACCCCCTCGCGGCCGCCAGCCCGGACAAGA
CCTTTTTCCTCCAGGCGCAGCAGCAGCACCAGAAGGAGAAAGAGGCAGGG
CACAATGGACGGGCGCTGAGGGAGGTGTTGGGCTTCGGGCTGAACCACCT
GATGGAGGCGGCGCGGTCTCTGTCCCCCCTGGACGTCTCCCAGGCAGCCA
TGGCCCTGCGGGAGTGTCTACAGGCCTGGAAGGGGCATACGGGAAGGCTA
TTGTAGAGGATGGAATCAGGGAGGGAAGGAGGGAAATGAGGCAGGCTCAT
AGAGCGTGGGCATGTGACATATCTCCGTTGGCGCGTTTGTTTACTATACT
GGTCTTCTCGATGGGATGGGTGTGTATGAGAGAGAGGCAATACACAAGAA
AAAGAGAAGAGGAGGAACAGCATAAAGAAGAGGAGCAAGATATGGAAATA
TGAGTGTATTCACCATGTGTATTAATATCAAACGTGAGCACGCGGTCGGC
CGAAAAGATGAAGTCCAATCTTTCGTCCATATTTGCTCCCATGCTCAGAA
TGATTAAGAAAATAATCTTACCCCAGCCGGTTCTGTGTATGTGTGTATGC
CTGTGTCTATGTATCTACCAAACAAAACTGTATGTGTGAGCGTATCTGCG
TGTGTGTGTTGCTGCCTTCTGTCCACAAACCAGCTACAAGCAAGCTCTGA
GAAGCGAAAACGATATACAAGAAGAGGAGTAGAGGGAATAATGACTCAGC
CTCATCGGCACCAAGCGAGCTATTTACAATAATATAAGGAGCCGAAGGAA
GAAAACGAGAAAGGAAAAAAGAGAGGAAAATGGGAAAACTACAGCCAAAA
AAATGAATGACAAGGGGAGAAGAAAGACACGAAAAGGACGAGGGGCAACC
GCGCCAGAAGAAGGAAGGAGAGGGGGAGATGAAGGAAAAGATGATGACGA
CGATGAAGAAAGAAGATCAATAACAACAACGAAAGCGACCCCCCCCCCCC
CAAAAGACAAGAACAACCACTAAAGTATGTAAAGACAAAGAAAGAGAGTA
ATATAAAAAGGGGGAAGGAACAAGCAAAGTGCATGCACGCATGTAGAGCC
ACCCCTCACCCATCAAAGCACTCTGTTTTTATACTAATACCGTCATAAGC
ACCAACAGCCAAGGAAAAATAAATCGAGAGGAGAGAAAGAGACAAAAGGG
GTGTCTCGACACGGGGTTAAGAGAGGAAAACGGGAAAATAAGAGGAAACA
GCCTCAGAAAGTTTGATAAGGAACGACTCATGCATGAATCAATTGTACTA
CCGACAAACAAAGCGCTTTTCCTCTTGCTGTCGCCCTCCCTTTCCTTTCC
TTCGGCATCCTTGCTTGTTGTTGAGAAATTGCAAGGGTAACAAAAAGGCA
GTATCAC

protein sequence of jgi.p|Nanoce1779_2|589943

>mRNA_5673-protein ID=mRNA_5673-protein|Name=jgi.p|Nanoce1779_2|589943|organism=Nannochloropsis oceanica|type=polypeptide|length=332bp
MEFSYWQAPSHEEEGEVNEQEEEEACWAIKKMMMGGTGEEKQQQQQVVEG
GFDEGVQELPEDDEMVVVMPAGEEYRSFENVPTATDYKPAPPSLPPFSSV
SCVSSHGQSTQLHQQHQSMMGHQEEKTGSATFESSYSSQGRSSSRTGTHT
PLPCTSFSPYPSSFTPAAFSAYVPTPEEHLAWAKIQSYWNSAGPSLQQAL
ILSLPSQLHQAWTSFFLVIPPFQSQEGMIHACHSLLSTSPALAASVHEHR
LALDPLAAASPDKTFFLQAQQQHQKEKEAGHNGRALREVLGFGLNHLMEA
ARSLSPLDVSQAAMALRECLQAWKGHTGRLL*

mRNA from alignment at scaffold_11:288275..290531+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5673 ID=mRNA_5673|Name=jgi.p|Nanoce1779_2|589943|organism=Nannochloropsis oceanica|type=mRNA|length=2257bp|location=Sequence derived from alignment at scaffold_11:288275..290531+ (Nannochloropsis oceanica)
GGAAGAAGCAGCAGCAGCAGCGACAGCGGGGTGACGATGAAGAGGACGAG
GAAGAGGGAGAAGGGGAGGAGGAAGAGAGGGAGGGCGAGTATTGTTACCG
AGAGGATGCAATGGAGTTTTCTTACTGGCAAGCCCCTTCGCACGAGGAAG
AGGGGGAGGTCAATGAGCAGGAGGAAGAGGAGGCGTGTTGGGCGATCAAG
AAGATGATGATGGGCGGAACGGGGGAGGAGAAGCAGCAGCAGCAGCAGGT
AGTGGAGGGCGGGTTTGATGAGGGAGTGCAGGAGCTGCCGGAGGACGACG
AGATGGTCGTGGTCATGCCGGCAGGAGAAGAGTATCGGTCTTTCGAAAAT
GTGCCGACGGCAACGGACTACAAGCCAGCCCCTCCCTCCCTCCCTCCCTT
CTCCTCCGTCTCCTGCGTCTCGTCCCATGGGCAATCTACCCAGCTGCACC
AGCAGCATCAATCGATGATGGGCCACCAAGAGGAAAAGACGGGCAGCGCC
ACCTTCGAGAGCAGCTACAGCAGCCAGGGCAGGAGCAGCAGCCGCACGGG
CACCCACACACCCCTCCCTTGCACTTCCTTCTCCCCCTATCCGTCGTCCT
TCACTCCTGCCGCCTTCTCCGCCTACGTCCCGACGCCCGAGGAGCACCTG
GCTTGGGCGAAAATTCAATCCTACTGGAACTCCGCCGGCCCCTCCCTCCA
GCAAGCCCTAATTCTCTCCCTCCCCTCCCAGCTCCACCAAGCTTGGACCT
CCTTCTTCCTCGTCATTCCTCCCTTCCAAAGCCAGGAAGGGATGATCCAC
GCATGTCACAGTCTCTTGTCCACATCGCCTGCGCTCGCCGCGTCCGTGCA
CGAACACCGCCTGGCTCTGGACCCCCTCGCGGCCGCCAGCCCGGACAAGA
CCTTTTTCCTCCAGGCGCAGCAGCAGCACCAGAAGGAGAAAGAGGCAGGG
CACAATGGACGGGCGCTGAGGGAGGTGTTGGGCTTCGGGCTGAACCACCT
GATGGAGGCGGCGCGGTCTCTGTCCCCCCTGGACGTCTCCCAGGCAGCCA
TGGCCCTGCGGGAGTGTCTACAGGCCTGGAAGGGGCATACGGGAAGGCTA
TTGTAGAGGATGGAATCAGGGAGGGAAGGAGGGAAATGAGGCAGGCTCAT
AGAGCGTGGGCATGTGACATATCTCCGTTGGCGCGTTTGTTTACTATACT
GGTCTTCTCGATGGGATGGGTGTGTATGAGAGAGAGGCAATACACAAGAA
AAAGAGAAGAGGAGGAACAGCATAAAGAAGAGGAGCAAGATATGGAAATA
TGAGTGTATTCACCATGTGTATTAATATCAAACGTGAGCACGCGGTCGGC
CGAAAAGATGAAGTCCAATCTTTCGTCCATATTTGCTCCCATGCTCAGAA
TGATTAAGAAAATAATCTTACCCCAGCCGGTTCTGTGTATGTGTGTATGC
CTGTGTCTATGTATCTACCAAACAAAACTGTATGTGTGAGCGTATCTGCG
TGTGTGTGTTGCTGCCTTCTGTCCACAAACCAGCTACAAGCAAGCTCTGA
GAAGCGAAAACGATATACAAGAAGAGGAGTAGAGGGAATAATGACTCAGC
CTCATCGGCACCAAGCGAGCTATTTACAATAATATAAGGAGCCGAAGGAA
GAAAACGAGAAAGGAAAAAAGAGAGGAAAATGGGAAAACTACAGCCAAAA
AAATGAATGACAAGGGGAGAAGAAAGACACGAAAAGGACGAGGGGCAACC
GCGCCAGAAGAAGGAAGGAGAGGGGGAGATGAAGGAAAAGATGATGACGA
CGATGAAGAAAGAAGATCAATAACAACAACGAAAGCGACCCCCCCCCCCC
CAAAAGACAAGAACAACCACTAAAGTATGTAAAGACAAAGAAAGAGAGTA
ATATAAAAAGGGGGAAGGAACAAGCAAAGTGCATGCACGCATGTAGAGCC
ACCCCTCACCCATCAAAGCACTCTGTTTTTATACTAATACCGTCATAAGC
ACCAACAGCCAAGGAAAAATAAATCGAGAGGAGAGAAAGAGACAAAAGGG
GTGTCTCGACACGGGGTTAAGAGAGGAAAACGGGAAAATAAGAGGAAACA
GCCTCAGAAAGTTTGATAAGGAACGACTCATGCATGAATCAATTGTACTA
CCGACAAACAAAGCGCTTTTCCTCTTGCTGTCGCCCTCCCTTTCCTTTCC
TTCGGCATCCTTGCTTGTTGTTGAGAAATTGCAAGGGTAACAAAAAGGCA
GTATCAC

Coding sequence (CDS) from alignment at scaffold_11:288275..290531+

>mRNA_5673 ID=mRNA_5673|Name=jgi.p|Nanoce1779_2|589943|organism=Nannochloropsis oceanica|type=CDS|length=996bp|location=Sequence derived from alignment at scaffold_11:288275..290531+ (Nannochloropsis oceanica)
ATGGAGTTTTCTTACTGGCAAGCCCCTTCGCACGAGGAAGAGGGGGAGGT
CAATGAGCAGGAGGAAGAGGAGGCGTGTTGGGCGATCAAGAAGATGATGA
TGGGCGGAACGGGGGAGGAGAAGCAGCAGCAGCAGCAGGTAGTGGAGGGC
GGGTTTGATGAGGGAGTGCAGGAGCTGCCGGAGGACGACGAGATGGTCGT
GGTCATGCCGGCAGGAGAAGAGTATCGGTCTTTCGAAAATGTGCCGACGG
CAACGGACTACAAGCCAGCCCCTCCCTCCCTCCCTCCCTTCTCCTCCGTC
TCCTGCGTCTCGTCCCATGGGCAATCTACCCAGCTGCACCAGCAGCATCA
ATCGATGATGGGCCACCAAGAGGAAAAGACGGGCAGCGCCACCTTCGAGA
GCAGCTACAGCAGCCAGGGCAGGAGCAGCAGCCGCACGGGCACCCACACA
CCCCTCCCTTGCACTTCCTTCTCCCCCTATCCGTCGTCCTTCACTCCTGC
CGCCTTCTCCGCCTACGTCCCGACGCCCGAGGAGCACCTGGCTTGGGCGA
AAATTCAATCCTACTGGAACTCCGCCGGCCCCTCCCTCCAGCAAGCCCTA
ATTCTCTCCCTCCCCTCCCAGCTCCACCAAGCTTGGACCTCCTTCTTCCT
CGTCATTCCTCCCTTCCAAAGCCAGGAAGGGATGATCCACGCATGTCACA
GTCTCTTGTCCACATCGCCTGCGCTCGCCGCGTCCGTGCACGAACACCGC
CTGGCTCTGGACCCCCTCGCGGCCGCCAGCCCGGACAAGACCTTTTTCCT
CCAGGCGCAGCAGCAGCACCAGAAGGAGAAAGAGGCAGGGCACAATGGAC
GGGCGCTGAGGGAGGTGTTGGGCTTCGGGCTGAACCACCTGATGGAGGCG
GCGCGGTCTCTGTCCCCCCTGGACGTCTCCCAGGCAGCCATGGCCCTGCG
GGAGTGTCTACAGGCCTGGAAGGGGCATACGGGAAGGCTATTGTAG

Synonyms

Publications